BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00001075
         (1881 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine...   496   e-137
ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601...   491   e-136
ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   462   e-127
ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619...   450   e-123
ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citr...   450   e-123
gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, ...   447   e-123
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   444   e-122
gb|EOY18773.1| Pseudouridine synthase family protein isoform 1 [...   441   e-121
ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine...   438   e-120
gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabi...   437   e-120
ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Popu...   437   e-120
gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus pe...   435   e-119
ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutr...   434   e-119
ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, part...   430   e-118
gb|ESW15747.1| hypothetical protein PHAVU_007G098900g [Phaseolus...   427   e-116
ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsi...   426   e-116
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   426   e-116
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              417   e-114
ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine...   411   e-112
gb|AFK43008.1| unknown [Medicago truncatula]                          404   e-110

>ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Solanum lycopersicum]
          Length = 414

 Score =  496 bits (1278), Expect = e-137
 Identities = 264/396 (66%), Positives = 303/396 (76%), Gaps = 28/396 (7%)
 Frame = -2

Query: 1631 LTRAN---HRHLRTLICSSLSSTPTTEFNITFAXXXXXXXXXP-----IRTATTDSNYDA 1476
            LTRA     RH+RT I SSLSS+ +T+FNITFA         P     I    +DSN D+
Sbjct: 20   LTRATPYTRRHIRTFITSSLSSS-STKFNITFAPPKPKPKTKPEPAIPIINPNSDSNSDS 78

Query: 1475 ----ESELGEQLYIPWIVRDEKGNLTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXX 1308
                ++E+G+QLYIPWIVRDEKGNLTLQS+PPA LLH MANA+T                
Sbjct: 79   VPNLDAEVGDQLYIPWIVRDEKGNLTLQSTPPARLLHEMANASTGKKKKKGKEVASKAAT 138

Query: 1307 XST--EPKLSKAARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCN 1134
                 EPK SKAARR+YNENFRDPPQRLSKVLAAAGVASRRSSEELIF G+VTVNGSVC 
Sbjct: 139  VVPTPEPKHSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCK 198

Query: 1133 TPQTRVDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKS 996
            TPQT+VDPA+DV                    NKPKGYICS+GEKETKS +SLFDD++KS
Sbjct: 199  TPQTKVDPARDVIYVNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKS 258

Query: 995  WGKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSK 816
            W K++PG PKPRLFTVGRLDVATTGLIIVTNDGEF H +SHPSSNLSKEYIAT+D  V K
Sbjct: 259  WDKRHPGQPKPRLFTVGRLDVATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDGEVHK 318

Query: 815  QQLMAIGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIH 636
            + L+AI EGT+I+GVHCTPD VEL+P QPD+SRPR+RIVVHEGRNHEVRELVK+AGLQ+ 
Sbjct: 319  RHLIAISEGTIIDGVHCTPDNVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAGLQLR 378

Query: 635  ALKRVRIGGFRLPSDLGIGKYLELKTANLRALGWKS 528
            ALKR+RIGGFRLP+DL +GK++EL  ANL+ALGWKS
Sbjct: 379  ALKRIRIGGFRLPADLALGKHVELNQANLKALGWKS 414


>ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601559 [Solanum tuberosum]
          Length = 413

 Score =  491 bits (1263), Expect = e-136
 Identities = 261/395 (66%), Positives = 299/395 (75%), Gaps = 27/395 (6%)
 Frame = -2

Query: 1631 LTRAN---HRHLRTLICSSLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAES--- 1470
            LTRA      H+RT I SSLSS+ +T+FNITFA         P      +S+ D++S   
Sbjct: 20   LTRATPYTRLHIRTFITSSLSSS-STKFNITFAPPKPKPKPKPEPAIPINSDSDSDSNSV 78

Query: 1469 -----ELGEQLYIPWIVRDEKGNLTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXXX 1305
                 E+G+QLYIPWIVRDEKGNLTLQS+PPA LLH MANA+T                 
Sbjct: 79   PNLEAEIGDQLYIPWIVRDEKGNLTLQSTPPARLLHEMANASTSKKKKKGKEVASKAATV 138

Query: 1304 ST--EPKLSKAARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNT 1131
                EPK SKAARR+YNENFRDPPQRLSKVLAAAGVASRRSSEELIF G+VTVNGSVC T
Sbjct: 139  VPTPEPKHSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCKT 198

Query: 1130 PQTRVDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSW 993
            PQT+VDPA+DV                    NKPKGYICS+GEKETKS +SLFDD++KSW
Sbjct: 199  PQTKVDPARDVIYVNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKSW 258

Query: 992  GKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQ 813
             K++PG PKPRLFTVGRLDVATTGLIIVTNDGEF H +SHPSSNLSKEYIAT+D  V K+
Sbjct: 259  DKRHPGQPKPRLFTVGRLDVATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDGEVHKR 318

Query: 812  QLMAIGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHA 633
             L+AI EGTVI+GVHC PD VEL+P QPD+SRPR+RIVVHEGRNHEVRELVK+AGLQ+ A
Sbjct: 319  HLIAISEGTVIDGVHCIPDNVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAGLQLRA 378

Query: 632  LKRVRIGGFRLPSDLGIGKYLELKTANLRALGWKS 528
            LKR+RIGGFRLP+DL +GK++EL  ANL+ALGWKS
Sbjct: 379  LKRIRIGGFRLPADLALGKHVELNQANLKALGWKS 413


>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  462 bits (1188), Expect = e-127
 Identities = 247/394 (62%), Positives = 287/394 (72%), Gaps = 17/394 (4%)
 Frame = -2

Query: 1658 HVSKPAIITLTRANHRHLRTL-ICSSLS--STPTTEFNITFAXXXXXXXXXPIRTATTDS 1488
            H+S+P++        RH RT+ + SS+S  ST + EFNI+FA                  
Sbjct: 23   HLSRPSLA------RRHFRTIPVRSSISPPSTTSAEFNISFAPK--------------SK 62

Query: 1487 NYDAESELGEQLYIPWIVRDEKGNLTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXX 1308
            N   +SE    L IPWIVRDE GNL +QS+PP   L  MA A                  
Sbjct: 63   NPKPQSET---LLIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTARA 119

Query: 1307 XSTEPKLSKAARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTP 1128
             + EPK SKAARR+YNENFRDPPQRLSKVLAAAGVASRR+SEELIF G+VTVNGSVCNTP
Sbjct: 120  VAVEPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTP 179

Query: 1127 QTRVDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWG 990
            QTRVDPA+D+                    NKPKGYICS+GEKE+KS L LFDDYLKSW 
Sbjct: 180  QTRVDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWN 239

Query: 989  KKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQ 810
            K+NPG+PKPR+FTVGRLDVATTGLII+TNDG+FA  LSHPSS LSKEYIAT+D  V+K+ 
Sbjct: 240  KQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRH 299

Query: 809  LMAIGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHAL 630
            L+AI EGTVIEGVHCTPD VEL+P QP+IS+PR+R+VVHEGRNHEVRELVK AGLQIH+L
Sbjct: 300  LIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSL 359

Query: 629  KRVRIGGFRLPSDLGIGKYLELKTANLRALGWKS 528
            KR+RIGGFRLPSDLG GK++ELK  +L+ALGWKS
Sbjct: 360  KRIRIGGFRLPSDLGHGKHVELKQGDLKALGWKS 393


>ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619728 [Citrus sinensis]
          Length = 401

 Score =  450 bits (1157), Expect = e-123
 Identities = 232/371 (62%), Positives = 277/371 (74%), Gaps = 21/371 (5%)
 Frame = -2

Query: 1577 STPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIVRDEKGNLTLQSS 1398
            S+ + +FNI+FA           R  T   ++++     +QL+IPWIVR E GNL LQ+ 
Sbjct: 39   SSSSLQFNISFAPPK--------RKKTQQDDFESGEGSEQQLFIPWIVRGEDGNLKLQTH 90

Query: 1397 PPASLLHAMANANTXXXXXXXXXXXXXXXXXSTE-------PKLSKAARRYYNENFRDPP 1239
            PPA L+H +A+A T                 +         PKLSKAARR+YN+NFRD P
Sbjct: 91   PPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAAPKLSKAARRFYNDNFRDTP 150

Query: 1238 QRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDPAKDVXXXXXX------- 1080
            +RLSKVLAAAGVASRRSSEELIF G+VTVNGSVCNTPQTRVDPA+D+             
Sbjct: 151  ERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDPARDIIYVNGKRLPKKLP 210

Query: 1079 -------NKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPKPRLFTVGRLDVATTG 921
                   NKPKGYICSAGEKE KS +SLFDDYLKSW K+NPGLP+PRLFTVGRLDVATTG
Sbjct: 211  PKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTG 270

Query: 920  LIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGTVIEGVHCTPDLVELI 741
            LIIVTNDG+FA  +SHPSS L KEYIAT+D +V+K+ L+AI EGTVIEG HCTPD+VEL+
Sbjct: 271  LIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELL 330

Query: 740  PRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGFRLPSDLGIGKYLELK 561
            P QPDI RPRIRIVVHEGRNHEVRELVK+AGL++++LKR+RIGGFRLPSDLGIG ++ELK
Sbjct: 331  PPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELK 390

Query: 560  TANLRALGWKS 528
             ++L+ +GWKS
Sbjct: 391  QSDLKLMGWKS 401


>ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citrus clementina]
            gi|557538690|gb|ESR49734.1| hypothetical protein
            CICLE_v10031516mg [Citrus clementina]
          Length = 451

 Score =  450 bits (1157), Expect = e-123
 Identities = 232/371 (62%), Positives = 277/371 (74%), Gaps = 21/371 (5%)
 Frame = -2

Query: 1577 STPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIVRDEKGNLTLQSS 1398
            S+ + +FNI+FA           R  T   ++++     +QL+IPWIVR E GNL LQ+ 
Sbjct: 89   SSSSLQFNISFAPPK--------RKKTQQDDFESGEGSEQQLFIPWIVRGEDGNLKLQTH 140

Query: 1397 PPASLLHAMANANTXXXXXXXXXXXXXXXXXSTE-------PKLSKAARRYYNENFRDPP 1239
            PPA L+H +A+A T                 +         PKLSKAARR+YN+NFRD P
Sbjct: 141  PPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAAPKLSKAARRFYNDNFRDTP 200

Query: 1238 QRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDPAKDVXXXXXX------- 1080
            +RLSKVLAAAGVASRRSSEELIF G+VTVNGSVCNTPQTRVDPA+D+             
Sbjct: 201  ERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDPARDIIYVNGKRLPKKLP 260

Query: 1079 -------NKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPKPRLFTVGRLDVATTG 921
                   NKPKGYICSAGEKE KS +SLFDDYLKSW K+NPGLP+PRLFTVGRLDVATTG
Sbjct: 261  PKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTG 320

Query: 920  LIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGTVIEGVHCTPDLVELI 741
            LIIVTNDG+FA  +SHPSS L KEYIAT+D +V+K+ L+AI EGTVIEG HCTPD+VEL+
Sbjct: 321  LIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELL 380

Query: 740  PRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGFRLPSDLGIGKYLELK 561
            P QPDI RPRIRIVVHEGRNHEVRELVK+AGL++++LKR+RIGGFRLPSDLGIG ++ELK
Sbjct: 381  PPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELK 440

Query: 560  TANLRALGWKS 528
             ++L+ +GWKS
Sbjct: 441  QSDLKLMGWKS 451


>gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao]
          Length = 398

 Score =  447 bits (1150), Expect = e-123
 Identities = 236/377 (62%), Positives = 270/377 (71%), Gaps = 25/377 (6%)
 Frame = -2

Query: 1583 LSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESE----LGEQLYIPWIVRDEKGN 1416
            ++S+ + +FNITFA                D   D           QL+IPWIVR E GN
Sbjct: 22   ITSSSSLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGN 81

Query: 1415 LTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXXXST-------EPKLSKAARRYYNE 1257
            L LQ+ PPA L+HA+A+A T                 S         PKLSKAARR+YNE
Sbjct: 82   LKLQAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNE 141

Query: 1256 NFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDPAKDVXXXXXX- 1080
            NF +PPQRLSKVLAAAGVASRR SEELIF GKVTVNGSVCN PQTRVDPAKD+       
Sbjct: 142  NFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSR 201

Query: 1079 -------------NKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPKPRLFTVGRL 939
                         NKPKGYICS+GEKE KS L LF+DYLK W K N G PKPRLFTVGRL
Sbjct: 202  LPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRL 261

Query: 938  DVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGTVIEGVHCTP 759
            DVATTGLIIVTNDG+FA  LSHPSSNL+KEYIAT+D  V K+ L+AI EGT IEG+HC P
Sbjct: 262  DVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVKKRHLIAISEGTEIEGIHCIP 321

Query: 758  DLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGFRLPSDLGIG 579
            D VEL+PRQPD+SRPR+RIVVHEGRNHEVRELVK+AGL+IH+LKRVRIGGFRLP+DLG+G
Sbjct: 322  DSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPADLGLG 381

Query: 578  KYLELKTANLRALGWKS 528
            K++ELK ++LRA+GWKS
Sbjct: 382  KHVELKQSDLRAMGWKS 398


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  444 bits (1142), Expect = e-122
 Identities = 233/368 (63%), Positives = 269/368 (73%), Gaps = 14/368 (3%)
 Frame = -2

Query: 1589 SSLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIVRDEKGNLT 1410
            +S SS+ + EFNITFA           ++   D     +   G QL+IPWIVR E GNL 
Sbjct: 40   ASSSSSSSLEFNITFAPPKPKP-----KSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLK 94

Query: 1409 LQSSPPASLLHAMANANTXXXXXXXXXXXXXXXXXSTEPKLSKAARRYYNENFRDPPQRL 1230
            LQS PP   LH+++   T                    PK SKAARR+YNEN R+  QRL
Sbjct: 95   LQSHPPTRFLHSVSEDETKPKKKKVSAGKPITEP----PKHSKAARRFYNENIRESSQRL 150

Query: 1229 SKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDPAKDVXXXXXX---------- 1080
            SKVLAAAGVASRRSSEELIFGG+VTVNGSVCNTPQTRVDPA+D+                
Sbjct: 151  SKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKV 210

Query: 1079 ----NKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPKPRLFTVGRLDVATTGLII 912
                NKPKGYICS+G+KE+KS +SLFDDYLKSW K  PG PKPRLFTVGRLDVATTGLII
Sbjct: 211  YLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLII 270

Query: 911  VTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGTVIEGVHCTPDLVELIPRQ 732
            VTNDG+FA  +SHPSS LSKEYIA +D +VSKQ L+AI EGT+I+GVHCTPD VEL+PRQ
Sbjct: 271  VTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQ 330

Query: 731  PDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGFRLPSDLGIGKYLELKTAN 552
            PDIS+ R+RIVVHEGRNHEVRELVK AGL+I++LKRVRIGGFRLPSDLG+G Y ELK + 
Sbjct: 331  PDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSE 390

Query: 551  LRALGWKS 528
            L+A+GWKS
Sbjct: 391  LKAIGWKS 398


>gb|EOY18773.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 453

 Score =  441 bits (1133), Expect = e-121
 Identities = 236/383 (61%), Positives = 270/383 (70%), Gaps = 31/383 (8%)
 Frame = -2

Query: 1583 LSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESE----LGEQLYIPWIVRDEKGN 1416
            ++S+ + +FNITFA                D   D           QL+IPWIVR E GN
Sbjct: 71   ITSSSSLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGN 130

Query: 1415 LTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXXXST-------EPKLSKAARRYYNE 1257
            L LQ+ PPA L+HA+A+A T                 S         PKLSKAARR+YNE
Sbjct: 131  LKLQAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNE 190

Query: 1256 NFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQ------TRVDPAKDVX 1095
            NF +PPQRLSKVLAAAGVASRR SEELIF GKVTVNGSVCN PQ      TRVDPAKD+ 
Sbjct: 191  NFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQASDNLQTRVDPAKDII 250

Query: 1094 XXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPKPRL 957
                               NKPKGYICS+GEKE KS L LF+DYLK W K N G PKPRL
Sbjct: 251  YVNGSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRL 310

Query: 956  FTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGTVIE 777
            FTVGRLDVATTGLIIVTNDG+FA  LSHPSSNL+KEYIAT+D  V K+ L+AI EGT IE
Sbjct: 311  FTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVKKRHLIAISEGTEIE 370

Query: 776  GVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGFRLP 597
            G+HC PD VEL+PRQPD+SRPR+RIVVHEGRNHEVRELVK+AGL+IH+LKRVRIGGFRLP
Sbjct: 371  GIHCIPDSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLP 430

Query: 596  SDLGIGKYLELKTANLRALGWKS 528
            +DLG+GK++ELK ++LRA+GWKS
Sbjct: 431  ADLGLGKHVELKQSDLRAMGWKS 453


>ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Fragaria vesca subsp. vesca]
          Length = 397

 Score =  438 bits (1126), Expect = e-120
 Identities = 238/386 (61%), Positives = 280/386 (72%), Gaps = 15/386 (3%)
 Frame = -2

Query: 1634 TLTRANHRHLRTLICSSLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQ 1455
            +L+    R L  L CSS     + EFNITFA             A++ S+       G+Q
Sbjct: 20   SLSLTPFRTLPRLTCSS-----SLEFNITFAPAPKPKPDPNSLPASSSSS-------GQQ 67

Query: 1454 LYIPWIVRDEKGNLTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXXXST-EPKLSKA 1278
            L+IPWIVR E G L LQS PPA LLH MA A+T                  T EPK SKA
Sbjct: 68   LFIPWIVRGEDGKLKLQSHPPARLLHEMAQADTKTKSKKNKDTAQKKQRVLTAEPKHSKA 127

Query: 1277 ARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDPAKDV 1098
            ARR+YNENFR+  QRLSKVLAAAGVASRRSSE+LIF GKVTVNGSVCNTPQT VDP +D+
Sbjct: 128  ARRFYNENFRES-QRLSKVLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQTPVDPGRDI 186

Query: 1097 XXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPKPR 960
                                NKPKGYIC+AGEK  KS LSLFDDYLKSW K+NPG P+PR
Sbjct: 187  IYVNGNRLPKKLPPKVYLALNKPKGYICAAGEK--KSVLSLFDDYLKSWDKRNPGTPRPR 244

Query: 959  LFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGTVI 780
            LFTVGRLDVATTGLI+VTNDG+FA ++SHPS+NL+KEYIA ++ SVSK+ L+AI EGTVI
Sbjct: 245  LFTVGRLDVATTGLIVVTNDGDFAQSISHPSANLTKEYIAVIEGSVSKKSLIAISEGTVI 304

Query: 779  EGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGFRL 600
            +GVHCTPD VEL+P+QP+ISR R+RIVVHEGRNHEVRELVK AGL+IH+LKRVRIGGFRL
Sbjct: 305  DGVHCTPDSVELLPQQPEISRSRLRIVVHEGRNHEVRELVKKAGLEIHSLKRVRIGGFRL 364

Query: 599  PSDLGIGKYLELKTANLRALGWKS*K 522
            P++LG+G ++EL+  +L ALGWK+ K
Sbjct: 365  PTNLGLGTHMELRQGDLSALGWKTKK 390


>gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabilis]
          Length = 404

 Score =  437 bits (1125), Expect = e-120
 Identities = 238/402 (59%), Positives = 285/402 (70%), Gaps = 24/402 (5%)
 Frame = -2

Query: 1661 LHVSKPAIITLT----RANHRHLRTLICSSLSSTPTTEFNITFAXXXXXXXXXPIRTATT 1494
            LH    ++++L+    R + RH+   +  SLSS+ T+EFNI+FA                
Sbjct: 12   LHHLSSSLLSLSSLSLRPSIRHILPRVLCSLSSS-TSEFNISFAPAKPKPQP---EATEV 67

Query: 1493 DSNYDAESELGEQLYIPWIVRDEKGNLTLQSSPPASLLHAMANANTXXXXXXXXXXXXXX 1314
            DS + A+   G QL+IPWI+R + GNL LQS PPA LLHAMA+A+T              
Sbjct: 68   DSLFGAD---GSQLFIPWIIRGDDGNLKLQSHPPARLLHAMAHADTKNSKKKKPTAAEKK 124

Query: 1313 XXXS------TEPKLSKAARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTV 1152
                       EPK SKAARR+YNENFR+  QRLSKVLAAAGVASRR+SEELI  G+VTV
Sbjct: 125  KKNDKADKSVAEPKYSKAARRFYNENFRESDQRLSKVLAAAGVASRRNSEELILEGRVTV 184

Query: 1151 NGSVCNTPQTRVDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLF 1014
            NGSVCNTPQTRVDPAKDV                    NKPKGYICS G+K  KS +SLF
Sbjct: 185  NGSVCNTPQTRVDPAKDVIYVNGNRLPKRLPPKVYLALNKPKGYICSVGDK--KSVMSLF 242

Query: 1013 DDYLKSWGKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATV 834
            DDYLK W K+N G  KPRLFTVGRLDVATTGLIIVTNDG+FA  LSHPSSNLSKEYIAT+
Sbjct: 243  DDYLKIWDKRNLGQSKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATI 302

Query: 833  DSSVSKQQLMAIGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKH 654
            + +VSK+ L+ I EGT I+GVHC PD VEL+P QP++ RPR+R+VVH+GR HEVREL+K+
Sbjct: 303  EGTVSKKHLLVISEGTFIDGVHCVPDSVELLPNQPEMPRPRLRVVVHDGRKHEVRELMKN 362

Query: 653  AGLQIHALKRVRIGGFRLPSDLGIGKYLELKTANLRALGWKS 528
            AGL+IH+LKRVRIGG+RLPSDLG+GK++ELK  +L ALGWKS
Sbjct: 363  AGLEIHSLKRVRIGGYRLPSDLGLGKHVELKQGDLSALGWKS 404


>ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Populus trichocarpa]
            gi|550332354|gb|EEE89362.2| hypothetical protein
            POPTR_0008s03540g [Populus trichocarpa]
          Length = 397

 Score =  437 bits (1125), Expect = e-120
 Identities = 233/366 (63%), Positives = 263/366 (71%), Gaps = 18/366 (4%)
 Frame = -2

Query: 1574 TPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIVRDEKGNLTLQSSP 1395
            T + EFNITFA             A   ++  + S    QL+IPWIVR E GNL LQS+P
Sbjct: 35   TASLEFNITFAPPKPKPKLP----ANLQTDAASLSLPPGQLFIPWIVRGEDGNLKLQSNP 90

Query: 1394 PASLLHAMANANTXXXXXXXXXXXXXXXXXST----EPKLSKAARRYYNENFRDPPQRLS 1227
            PA L+HA+A+A T                       EP  SKAARR+YNENFRD  QRLS
Sbjct: 91   PARLIHAIADAKTQPKKKKDKVKKESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLS 150

Query: 1226 KVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDPAKDVXXXXXX----------- 1080
            KVLAAAGVASRRSSE LIF GKVTVNGSVCNTPQTRVDP +D                  
Sbjct: 151  KVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDAIYVNGNRLPKKLPPKIY 210

Query: 1079 ---NKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPKPRLFTVGRLDVATTGLIIV 909
               NKPKGYICS GEKE+KS + L DDY +SW K+NPGLPKPRLFTVGRLDVATTGLIIV
Sbjct: 211  IALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIV 270

Query: 908  TNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGTVIEGVHCTPDLVELIPRQP 729
            TNDG+FA  ++HPSSNLSKEYIATVD  VSK+ L A+ EGTVIEGV C PD VEL+P+QP
Sbjct: 271  TNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQP 330

Query: 728  DISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGFRLPSDLGIGKYLELKTANL 549
            D  RPR+RIVVHEGRNHEVRELVK+AGL+IH+LKRVRIGGFRLPSDLG+GK+ ELK  +L
Sbjct: 331  DRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDL 390

Query: 548  RALGWK 531
            + LGWK
Sbjct: 391  KTLGWK 396


>gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus persica]
          Length = 393

 Score =  435 bits (1118), Expect = e-119
 Identities = 234/372 (62%), Positives = 268/372 (72%), Gaps = 14/372 (3%)
 Frame = -2

Query: 1601 TLICSSLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIVRDEK 1422
            T   S+ SS+ + EFNITFA         P      DS       L  QL IPWIVR E 
Sbjct: 34   TCSLSTSSSSSSLEFNITFAPSKPKPKLKP------DSAEPDPEALAGQLIIPWIVRGED 87

Query: 1421 GNLTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXXXSTEPKLSKAARRYYNENFRDP 1242
            GNL LQS PPA  L A+   +                    EPK SKAARR+YNENFRD 
Sbjct: 88   GNLKLQSHPPARFLQAIETKSKTKKKKEGAEKRVPT----AEPKYSKAARRFYNENFRDA 143

Query: 1241 PQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDPAKDVXXXXXX------ 1080
             QRLSKVLAAAGVASRRSSE+LIF GKVTVNGSVCNTPQ+RVDP +D+            
Sbjct: 144  SQRLSKVLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQSRVDPGRDIIYVNGNRLPKRL 203

Query: 1079 --------NKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPKPRLFTVGRLDVATT 924
                    NKPKGYIC++GE   KS LSLF+DYLK+W K+N G+P+PRLFTVGRLDVATT
Sbjct: 204  PPKVYLALNKPKGYICASGEN--KSVLSLFEDYLKTWDKRNSGIPRPRLFTVGRLDVATT 261

Query: 923  GLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGTVIEGVHCTPDLVEL 744
            GLIIVTNDG+FA  +SHPSSNLSKEYIA ++  VSK+ L+AI EGTVIEGVHCTPD VEL
Sbjct: 262  GLIIVTNDGDFAQKISHPSSNLSKEYIAAIEGVVSKRHLLAISEGTVIEGVHCTPDSVEL 321

Query: 743  IPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGFRLPSDLGIGKYLEL 564
            +P+QPD+SRPR+RIVVHEGRNHEVRELVK+AGL+IH+LKRVRIGGFRLPSDLG+GK++ L
Sbjct: 322  LPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHMAL 381

Query: 563  KTANLRALGWKS 528
            K  +L ALGWKS
Sbjct: 382  KQGDLSALGWKS 393


>ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutrema salsugineum]
            gi|557112308|gb|ESQ52592.1| hypothetical protein
            EUTSA_v10016747mg [Eutrema salsugineum]
          Length = 403

 Score =  434 bits (1115), Expect = e-119
 Identities = 230/386 (59%), Positives = 274/386 (70%), Gaps = 26/386 (6%)
 Frame = -2

Query: 1607 LRTLICS--SLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIV 1434
            +RTL CS  S SS+   EF+ITFA               T S+    + + +QL+IPWIV
Sbjct: 30   IRTLRCSLSSSSSSEPLEFDITFAPPKP-----------TPSSTRGGAGV-QQLFIPWIV 77

Query: 1433 RDEKGNLTLQSSPPASLLHAMANANT----------XXXXXXXXXXXXXXXXXSTEPKLS 1284
            R E G L +QS PPA L+HA+A+A T                            ++PKLS
Sbjct: 78   RGEDGKLKVQSQPPARLIHALADATTQNPKKKDKSKKKKPQSTSASTPSSPASHSKPKLS 137

Query: 1283 KAARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDPAK 1104
            KAARR+YNENF+DPPQRLSKVLAAAGVASRR+SEELIF GKVTVNGS+C  PQ RVDP +
Sbjct: 138  KAARRFYNENFKDPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGSLCTAPQIRVDPTR 197

Query: 1103 DV--------------XXXXXXNKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPK 966
            D+                    NKPKGYICS+GEKE KS +SLFDD+L SW K+NPG PK
Sbjct: 198  DIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFDDFLASWDKRNPGTPK 257

Query: 965  PRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGT 786
            PRLFTVGRLDVATTGLI+VTNDG+FA  LSHPSS+L KEYI TV   V K+ LM I EGT
Sbjct: 258  PRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDVHKRHLMTISEGT 317

Query: 785  VIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGF 606
            ++EGVHC PD VEL+P+Q DI R R+RIVVHEGRNHEVRE+VK+AGL++H+LKRVRIGGF
Sbjct: 318  IVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVREIVKNAGLEVHSLKRVRIGGF 377

Query: 605  RLPSDLGIGKYLELKTANLRALGWKS 528
            RLPSDLG+GK++ELK + L+A+GWKS
Sbjct: 378  RLPSDLGLGKHVELKQSELKAMGWKS 403


>ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, partial [Capsella rubella]
            gi|482562896|gb|EOA27086.1| hypothetical protein
            CARUB_v10023183mg, partial [Capsella rubella]
          Length = 456

 Score =  430 bits (1106), Expect = e-118
 Identities = 228/391 (58%), Positives = 270/391 (69%), Gaps = 32/391 (8%)
 Frame = -2

Query: 1607 LRTLICSSLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIVRD 1428
            +RTL CS  SS+   EF+I+FA           + A+T      +     QL+IPWIVR 
Sbjct: 77   IRTLRCSVSSSSEPLEFDISFAPPKP-------KPASTRGGVSPQ-----QLFIPWIVRG 124

Query: 1427 EKGNLTLQSSPPASLLHAMA------------------NANTXXXXXXXXXXXXXXXXXS 1302
            + G L LQS PPA L+H++A                     T                  
Sbjct: 125  DDGTLKLQSQPPARLIHSLAIDATTQNPKKKEKSKKKQTQATSSSATASSSASASSPPPQ 184

Query: 1301 TEPKLSKAARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQT 1122
            + PKLSKAARR+YNENF++PPQRLSKVLAAAGVASRR+SEELIF GKVTVNG +CNTPQT
Sbjct: 185  SVPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQT 244

Query: 1121 RVDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWGKK 984
            RVDP++D+                    NKPKGYICS+GEKE KS +SLFD+Y+ SW K+
Sbjct: 245  RVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFDEYMASWDKR 304

Query: 983  NPGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLM 804
            NPG PKPRLFTVGRLDVATTGLIIVTNDG+FA  LSHPSS+L KEYI TV   + K+ LM
Sbjct: 305  NPGTPKPRLFTVGRLDVATTGLIIVTNDGDFAQQLSHPSSSLPKEYITTVVGDIHKRHLM 364

Query: 803  AIGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKR 624
            AI EGT++EGVHC PDLVEL+P+Q DI R R+RIVVHEGRNHEVRELVK+AGL +H+LKR
Sbjct: 365  AISEGTIVEGVHCVPDLVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLVVHSLKR 424

Query: 623  VRIGGFRLPSDLGIGKYLELKTANLRALGWK 531
            VRIGGFRLPSDLG+GK+ ELK + L+ LGWK
Sbjct: 425  VRIGGFRLPSDLGLGKHAELKQSELKVLGWK 455


>gb|ESW15747.1| hypothetical protein PHAVU_007G098900g [Phaseolus vulgaris]
          Length = 403

 Score =  427 bits (1097), Expect = e-116
 Identities = 236/391 (60%), Positives = 268/391 (68%), Gaps = 22/391 (5%)
 Frame = -2

Query: 1634 TLTRANHRHLRTLICSSLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQ 1455
            TL+ A+ R L  L CS  SS     FNI+FA          +       + D  +E    
Sbjct: 21   TLSLASFRILPRLTCSFSSSI---NFNISFAPPKPKPKPNNLHP-----HPDLSNEPDGP 72

Query: 1454 LYIPWIVRDEKGNLTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXXXSTE------- 1296
            L IPWIVR E GNL LQS PP SLL+A+A A T                   +       
Sbjct: 73   LLIPWIVRGEDGNLKLQSEPPPSLLNAIATAQTGTRKDSNQKTKTTAATTKPQKIRATAP 132

Query: 1295 PKLSKAARRYYNENFRDPP-QRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTR 1119
            P+ SKAARR+YN+N ++    RLSKVLAA+GVASRRS EELIF GKVTVNGSVCNTPQTR
Sbjct: 133  PQHSKAARRFYNQNIKESSGARLSKVLAASGVASRRSCEELIFEGKVTVNGSVCNTPQTR 192

Query: 1118 VDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWGKKN 981
            VDPAKDV                    NKPKGYICS+GE E+KS +SLFDD+L +WGKK 
Sbjct: 193  VDPAKDVIYVNGNRLPKRQPQKVYLALNKPKGYICSSGENESKSVISLFDDFLNTWGKKR 252

Query: 980  PGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMA 801
            PG+P PRLFTVGRLDVATTGLIIVTNDG+FA  LSHPSSNLSKEYIATVD  V K+ LMA
Sbjct: 253  PGVPTPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATVDGLVYKRHLMA 312

Query: 800  IGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRV 621
            I EGT IEGVHC PD VE++PRQ D+ R RIRIVVHEGR HEVRELVK+AGL+IH+LKR+
Sbjct: 313  ISEGTTIEGVHCVPDAVEILPRQADMQRARIRIVVHEGRKHEVRELVKNAGLEIHSLKRI 372

Query: 620  RIGGFRLPSDLGIGKYLELKTANLRALGWKS 528
            RIGGFRLP DLG+GKY+EL   NL ALGWKS
Sbjct: 373  RIGGFRLPPDLGLGKYIELNPTNLNALGWKS 403


>ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsis thaliana]
            gi|21617894|gb|AAM66944.1| unknown [Arabidopsis thaliana]
            gi|26450440|dbj|BAC42334.1| unknown protein [Arabidopsis
            thaliana] gi|330254545|gb|AEC09639.1| pseudouridine
            synthase family protein [Arabidopsis thaliana]
          Length = 410

 Score =  426 bits (1096), Expect = e-116
 Identities = 230/392 (58%), Positives = 277/392 (70%), Gaps = 32/392 (8%)
 Frame = -2

Query: 1607 LRTLICS-SLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIVR 1431
            +RTL CS S SS+   EF+I+FA           + ++T      +     QL+IPWIVR
Sbjct: 31   IRTLRCSVSSSSSEPIEFDISFAPPKP-------KPSSTHGGVTPQ-----QLFIPWIVR 78

Query: 1430 DEKGNLTLQSSPPASLLHAMA-NANTXXXXXXXXXXXXXXXXXST--------------- 1299
             + G L LQS PPA L+H +A +A T                 S+               
Sbjct: 79   SDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATTTASSPASHSE 138

Query: 1298 -EPKLSKAARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQT 1122
             +PKLSKAARR+YNENF++ PQRLSKVLAAAGVASRR+SEELIF GKVTVNG +CNTPQT
Sbjct: 139  VKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQT 198

Query: 1121 RVDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWGKK 984
            RVDP++D+                    NKPKGYICS+GEKE KSA+SLFD+YL SW K+
Sbjct: 199  RVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWDKR 258

Query: 983  NPGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLM 804
            NPG PKPRLFTVGRLDVATTGLI+VTNDG+FA  LSHPSS+L KEYI TV   + K+ LM
Sbjct: 259  NPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLM 318

Query: 803  AIGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKR 624
            AI EGT++EGVHC PD VEL+P+Q DI R R+RIVVHEGRNHEVRELVK+AGL++H+LKR
Sbjct: 319  AISEGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKR 378

Query: 623  VRIGGFRLPSDLGIGKYLELKTANLRALGWKS 528
            VRIGGFRLPSDLG+GK++ELK + L+ALGWK+
Sbjct: 379  VRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  426 bits (1095), Expect = e-116
 Identities = 228/394 (57%), Positives = 271/394 (68%), Gaps = 34/394 (8%)
 Frame = -2

Query: 1607 LRTLICS--SLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIV 1434
            +RTL CS  S SS+   EF+I+FA           R   T           +QL+IPWIV
Sbjct: 31   IRTLRCSVSSSSSSEPIEFDISFAPPKPKPSST--RGGATP----------QQLFIPWIV 78

Query: 1433 RDEKGNLTLQSSPPASLLHAMA------------------NANTXXXXXXXXXXXXXXXX 1308
            R + G L LQS PPA L+H +A                     T                
Sbjct: 79   RGDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASATASASSPASH 138

Query: 1307 XSTEPKLSKAARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTP 1128
               +PKLSKAARR+YNENF++PPQRLSKVLAAAGVASRR+SEELIF GKVTVNG +CNTP
Sbjct: 139  SEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTP 198

Query: 1127 QTRVDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWG 990
            QTRVDP++D+                    NKPKGYICS+GEKE KS +SLFD+YL SW 
Sbjct: 199  QTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFDEYLSSWD 258

Query: 989  KKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQ 810
            K+NPG PKPRLFTVGRLDVATTGLI+VTNDG+FA  LSHPSS+L KEYI TV   + K+ 
Sbjct: 259  KRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRH 318

Query: 809  LMAIGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHAL 630
            LMAI EGT++EGVHC PD VEL+P+Q DI R R+RIVVHEGRNHEVRELVK+AGL++H+L
Sbjct: 319  LMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSL 378

Query: 629  KRVRIGGFRLPSDLGIGKYLELKTANLRALGWKS 528
            KRVRIGGFRLPSDLG+GK++ELK + L+A+GWK+
Sbjct: 379  KRVRIGGFRLPSDLGLGKHVELKQSELKAMGWKN 412


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  417 bits (1073), Expect = e-114
 Identities = 206/271 (76%), Positives = 233/271 (85%), Gaps = 14/271 (5%)
 Frame = -2

Query: 1298 EPKLSKAARRYYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTR 1119
            EPK SKAARR+YNENFRDPPQRLSKVLAAAGVASRR+SEELIF G+VTVNGSVCNTPQTR
Sbjct: 26   EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTR 85

Query: 1118 VDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWGKKN 981
            VDPA+D+                    NKPKGYICS+GEKE+KS L LFDDYLKSW K+N
Sbjct: 86   VDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQN 145

Query: 980  PGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMA 801
            PG+PKPR+FTVGRLDVATTGLII+TNDG+FA  LSHPSS LSKEYIAT+D  V+K+ L+A
Sbjct: 146  PGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIA 205

Query: 800  IGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRV 621
            I EGTVIEGVHCTPD VEL+P QP+IS+PR+R+VVHEGRNHEVRELVK AGLQIH+LKR+
Sbjct: 206  ISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRI 265

Query: 620  RIGGFRLPSDLGIGKYLELKTANLRALGWKS 528
            RIGGFRLPSDLG GK++ELK  +L+ALGWKS
Sbjct: 266  RIGGFRLPSDLGHGKHVELKQGDLKALGWKS 296


>ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cicer arietinum]
          Length = 410

 Score =  411 bits (1057), Expect = e-112
 Identities = 226/378 (59%), Positives = 259/378 (68%), Gaps = 22/378 (5%)
 Frame = -2

Query: 1604 RTLICSSLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQLYIPWIVRDE 1425
            RTL   + SS+P  +FNI+F+         P     + + +  ++E   QL IPWIVR E
Sbjct: 27   RTLPRFTCSSSPF-KFNISFSPSKPKPNPKPEPQTESPNQFPDDNE--GQLIIPWIVRGE 83

Query: 1424 KGNLTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXXXSTE--------PKLSKAARR 1269
             GN  L S PP S L AMAN  T                   E        P+ SKAARR
Sbjct: 84   DGNFKLLSEPPPSFLKAMANDKTGTKKSDKNQTTKNKKKSENETKVRATAPPQYSKAARR 143

Query: 1268 YYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDPAKDVXXX 1089
            +YNENF+D   RLSKVLAA+GVASRRS E+LIF GKVTVNGSVCNTPQTRVDPAKDV   
Sbjct: 144  FYNENFKDSGTRLSKVLAASGVASRRSCEDLIFEGKVTVNGSVCNTPQTRVDPAKDVIYV 203

Query: 1088 XXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWGKKNPGLPKPRLFT 951
                             NKPKGYICS+GEKE+KS LSLFDD+L SW KK+PG+P PRLFT
Sbjct: 204  NGSRLPKRQPHKVYLALNKPKGYICSSGEKESKSVLSLFDDFLSSWDKKHPGVPMPRLFT 263

Query: 950  VGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQLMAIGEGTVIEGV 771
            VGRLDVATTGL+IVTNDG+FA  LSHPSSN SKEYIATV+  V K+ L AI EGT IEGV
Sbjct: 264  VGRLDVATTGLLIVTNDGDFAQRLSHPSSNFSKEYIATVNGLVHKRHLTAISEGTTIEGV 323

Query: 770  HCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALKRVRIGGFRLPSD 591
            HC PD VEL+P  PD  R R+RIVVH+GR HEVRELVK+AGL+IH+LKRVRIGGFRLP D
Sbjct: 324  HCVPDSVELLPSMPDAQRARLRIVVHDGRKHEVRELVKNAGLEIHSLKRVRIGGFRLPPD 383

Query: 590  LGIGKYLELKTANLRALG 537
            LG+GKY+EL    L+ALG
Sbjct: 384  LGLGKYIELNPTKLKALG 401


>gb|AFK43008.1| unknown [Medicago truncatula]
          Length = 408

 Score =  404 bits (1039), Expect = e-110
 Identities = 228/390 (58%), Positives = 255/390 (65%), Gaps = 24/390 (6%)
 Frame = -2

Query: 1634 TLTRANHRHLRTLICSSLSSTPTTEFNITFAXXXXXXXXXPIRTATTDSNYDAESELGEQ 1455
            T   +  R L    CSS S     +FNI+F+         P     T  + D E  L   
Sbjct: 20   TKLTSTFRTLPRFTCSSSS-----KFNISFSPSNPKPKPTPQPKTQTPHDDDDEGPL--- 71

Query: 1454 LYIPWIVRDEKGNLTLQSSPPASLLHAMANANTXXXXXXXXXXXXXXXXXSTE------- 1296
              IPWIVR E GN  L S PP S L  MANA T                   E       
Sbjct: 72   -MIPWIVRGEDGNFKLLSEPPPSFLKEMANAQTGTKKSEKDQITKNKKKGEKETKIRAVT 130

Query: 1295 --PKLSKAARRYYNENFRDPP-QRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQ 1125
              PK SKAARR+YNEN +D    RLSKVLAA+GVASRRS E+LIF GKVTVNGSVCNTPQ
Sbjct: 131  APPKYSKAARRFYNENIKDDSGTRLSKVLAASGVASRRSCEDLIFKGKVTVNGSVCNTPQ 190

Query: 1124 TRVDPAKDVXXXXXX--------------NKPKGYICSAGEKETKSALSLFDDYLKSWGK 987
            T+VDP+KD                     NKPKGYICS+GEKE+KS +SLFDD+L SW K
Sbjct: 191  TKVDPSKDNIYVNGSRLPKRQPHKVYLALNKPKGYICSSGEKESKSVISLFDDFLSSWDK 250

Query: 986  KNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFAHNLSHPSSNLSKEYIATVDSSVSKQQL 807
            K+PG+P PRLFTVGRLDVATTGL+IVTNDG+FA  LSHPSSN SKEYIATVD  V K+ L
Sbjct: 251  KHPGVPPPRLFTVGRLDVATTGLLIVTNDGDFAQKLSHPSSNFSKEYIATVDGLVHKRHL 310

Query: 806  MAIGEGTVIEGVHCTPDLVELIPRQPDISRPRIRIVVHEGRNHEVRELVKHAGLQIHALK 627
             AI EGT IEGVHC PD VEL+PR PD  R R+RIVVH+GR HEVRELVK AGL+IH+LK
Sbjct: 311  TAISEGTTIEGVHCVPDSVELLPRMPDTQRSRLRIVVHDGRKHEVRELVKSAGLEIHSLK 370

Query: 626  RVRIGGFRLPSDLGIGKYLELKTANLRALG 537
            RVRIGGFRLP DLGIGKY+EL   NL+ALG
Sbjct: 371  RVRIGGFRLPPDLGIGKYIELNPTNLKALG 400