BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00001022
         (2310 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   729   0.0  
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   714   0.0  
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   699   0.0  
gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus pe...   697   0.0  
gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao] gi|508...   692   0.0  
ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,...   675   0.0  
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   674   0.0  
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   660   0.0  
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...   660   0.0  
gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]     659   0.0  
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...   657   0.0  
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   653   0.0  
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   651   0.0  
ref|XP_002333134.1| predicted protein [Populus trichocarpa]           650   0.0  
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,...   642   0.0  
ref|XP_002331841.1| predicted protein [Populus trichocarpa]           636   e-179
ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glyci...   632   e-178
gb|ESW33340.1| hypothetical protein PHAVU_001G061400g [Phaseolus...   629   e-177
ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,...   620   e-174
dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]     619   e-174

>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  729 bits (1881), Expect = 0.0
 Identities = 375/518 (72%), Positives = 428/518 (82%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVTVSSSA+R+PLGL+++ STR+   +RP I+SFK  KTKN  L+AP+ES++L +E S
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSTRLCPLKRPVIVSFKKDKTKNTTLIAPKESISLSIETS 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            K+NEKRSRR  +  ERV  ++I+  +PSTLELDY+EAAAKLE IYKRS  T+   TE++D
Sbjct: 61   KENEKRSRRVSKRSERVHAVAIEA-SPSTLELDYSEAAAKLESIYKRSLETASSNTEVQD 119

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
            H VKR    RK + E  EEA K  A N+V         LNL++RIAL K KE E+V SS+
Sbjct: 120  HLVKRRPRTRKRIVEGDEEAKKEVADNVVKNRRKTSKRLNLDQRIALLKNKEGEMVASSE 179

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             +K  +  E+ KI++LVREYS +TD  SLDWKKMKIPPVLPSSEH WLFKLMQP+KAILQ
Sbjct: 180  RRKLKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQ 239

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
            VKENLQ+DLGREPTDGE+AEATNMD  ELRKK+EVGRAARNKLIKHNLRLVLFVMNKYFQ
Sbjct: 240  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQ 299

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFANG +FQDLCQAGVKGLITAIDRFEP R FRLSTYGLFWIRHAIIRSMT SSFTKV F
Sbjct: 300  DFANGSRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPF 359

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLES+RVEIQKAKLELLFEL R+PT+EEII RVG+SPERYHEVM+ SKP+ SLH+R+  T
Sbjct: 360  GLESIRVEIQKAKLELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKTT 419

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEE INGITDVDGV+ GDKR+QPA             KPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  QEELINGITDVDGVD-GDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 1868
            EIAGNLNISREMVRKHEVKALMKLKHP RVDY+RRY++
Sbjct: 479  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 1 [Solanum
            lycopersicum]
          Length = 516

 Score =  714 bits (1842), Expect = 0.0
 Identities = 368/518 (71%), Positives = 421/518 (81%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVTVSSSA+R+PLGL+++ S R+   +RP I+SFK   TKN  LV+P+ES++ P+E S
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDITKNTTLVSPKESISSPIETS 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            K+NEKRSRR  +  ERV  ++I+   PSTLELDY+EAAAKLE IYKRS  T+   TE+KD
Sbjct: 61   KENEKRSRRVSKRTERVHAVTIEAP-PSTLELDYSEAAAKLESIYKRSLETASPNTEVKD 119

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
            H VKR    RK + E  EEA K    N+V         LNL++RIAL K KE +++ SS+
Sbjct: 120  HLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASSE 179

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             +K  +  E+ KI++LVREYS +TD  SLDWKKMKIPPVLPSSEH WLFKLMQP+KAILQ
Sbjct: 180  RRKLNEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQ 239

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
            VKENLQ+DLGREPTDGE+AEATNMD  ELRKK+E GRAARNKLIKHNLRLVLFVMNKYFQ
Sbjct: 240  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQ 299

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFAN  +FQDLCQAGVKGLITAIDRFEP R FRLSTYGLFWIRHAIIR MT SSFTKV F
Sbjct: 300  DFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPF 359

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLES+RVEIQKAKLELLFEL R+PT++EII+RVG SPERYHEVM+ SKPI SLH+R+  T
Sbjct: 360  GLESIRVEIQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTT 419

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEE INGITDVDGV+ GDKR+QPA             KPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  QEELINGITDVDGVD-GDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 1868
            EIAGNLNISREMVRKHEVKALMKLKHP RVDY+RRY++
Sbjct: 479  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  699 bits (1803), Expect = 0.0
 Identities = 364/520 (70%), Positives = 423/520 (81%), Gaps = 2/520 (0%)
 Frame = +3

Query: 315  MGVVTVSSSAA--RTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPME 488
            MGVVTVSSSA+  RTP GLNAK S   +  RRP +L+FK  K KN ALV P E + LP+E
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 489  ISKKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETEL 668
             SK ++KR RR+ +  +RVK +S D+ +P ++ELDYNEAAAKLE+IYK SPAT   E E 
Sbjct: 61   TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED 120

Query: 669  KDHEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVS 848
             +  V+RG+ RRK V    ++A K  + N+V         L+LEKRIAL K K+ E  V+
Sbjct: 121  LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQ-EKAVA 179

Query: 849  SKSKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAI 1028
            S  KKR   +E+  I+ LVREYS STD VSLDWKKMKIPPVLP SEHAWLFKLMQP+K +
Sbjct: 180  SIQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGL 239

Query: 1029 LQVKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKY 1208
            L+VK+NLQ DLGREPTDGELAEA +M  V++R+ MEVG+AARNKLIKHNLRLVLFV+NKY
Sbjct: 240  LEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKY 299

Query: 1209 FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKV 1388
            FQ+FANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAI+RSMTLSSFT+V
Sbjct: 300  FQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRV 359

Query: 1389 SFGLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHS 1568
            SFGLESVRVEIQ+AKLELLF+L R+PTEEEIIE+VGISPERYHEVMRASK ++SLH+RH+
Sbjct: 360  SFGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHA 419

Query: 1569 VTQEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRT 1748
             TQEE+INGITDV+GV GGD+ RQ A             KPKESLV+RQRYGLDGKGDRT
Sbjct: 420  TTQEEYINGITDVEGV-GGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRT 478

Query: 1749 LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 1868
            LGEIAGNL+ISREMVRKHEVKALMKLKHPARVDYLR+Y++
Sbjct: 479  LGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYIF 518


>gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  697 bits (1799), Expect = 0.0
 Identities = 363/519 (69%), Positives = 422/519 (81%), Gaps = 2/519 (0%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVTVSSSA+RTPLGL+ KL+ + S  R+P I++FKT +    ALVAPQE + LP+E  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPAT-SDCETELK 671
            KK++KR  ++ +  + VK  + D  +P TLE+DYNEAAAKLE++YKRSP T ++ + E  
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 120

Query: 672  DHEVKRGQHRRKAVEE-DKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVS 848
            D  ++RG+ RRK   E D ++    T+  +V         L+L KR+AL+  K+ +++ S
Sbjct: 121  DGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISS 180

Query: 849  SKSKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAI 1028
               K+++  +E  KI  LVREYSTSTD VSLDWKKMKIPPVL SSEHAWLFKLMQP+K +
Sbjct: 181  IVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1029 LQVKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKY 1208
            L+VKENLQ DLGREPT+GELAEATNM VV+++K +EVGRAAR+KLIKHNLRLVLFVMNKY
Sbjct: 241  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 300

Query: 1209 FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKV 1388
            FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFT+V
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRV 360

Query: 1389 SFGLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHS 1568
            SFGLESVR EIQKAKL +LF L RMPTE+EIIE+VGISPERYHEVMRASKP+ SLHSRH+
Sbjct: 361  SFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHT 420

Query: 1569 VTQEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRT 1748
             TQEEFINGITDVDGVE GD R++PA             KPKESLVIRQRYGLDGKGDRT
Sbjct: 421  TTQEEFINGITDVDGVE-GDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRT 479

Query: 1749 LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV
Sbjct: 480  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 518


>gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  692 bits (1785), Expect = 0.0
 Identities = 358/517 (69%), Positives = 415/517 (80%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVV+VSSSAARTPLGL+ K ST+    RRP  ++FK  K+ N ALV PQE + LP+E +
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            K++ KR  ++ + P+ V  +  D  +P TLE+DYNEAAAKLE+IYK SPAT   + E  +
Sbjct: 61   KEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEVE 120

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
             ++K  + RRK  +E  E+        +V         L+L+ RIAL+K +E + VVS +
Sbjct: 121  GKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVR 180

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             KK ++++ E KI+RLVR+YS STD VSLDW+KMKIPPVLPS EH WLFKLMQP+KA+LQ
Sbjct: 181  RKKSSENESE-KIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQ 239

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
             KENLQ DLGR+PT+ ELAEATNM   ++RK +EVG+AARNKLIKHNLRLVLF +NKYFQ
Sbjct: 240  AKENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQ 299

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFANGP+FQDLCQAGVKGLITAIDRFEP+R FRLSTY LFWIRHAIIRSMTLSSFT+VSF
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSF 359

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLESVRVEIQ+AKLELLFELHR PTEEEII++VGISPERY EVMRASKP+ SLHSRHSVT
Sbjct: 360  GLESVRVEIQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVT 419

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEEFINGITD+DGV GGD RRQPA             KPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  QEEFINGITDIDGV-GGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV
Sbjct: 479  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 515


>ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 2 [Solanum
            lycopersicum]
          Length = 487

 Score =  675 bits (1742), Expect = 0.0
 Identities = 356/518 (68%), Positives = 400/518 (77%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVTVSSSA+R+PLGL+++ S R+   +RP I+SFK   TKN  LV+P+ES++ P+E S
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDITKNTTLVSPKESISSPIETS 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            K+NEKRSRR  +  ERV  ++I+   PSTLELDY+EAAAKLE IYKRS  T+   TE+KD
Sbjct: 61   KENEKRSRRVSKRTERVHAVTIEAP-PSTLELDYSEAAAKLESIYKRSLETASPNTEVKD 119

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
            H VKR    RK + E  EEA K    N+V         LNL++RIAL K KE        
Sbjct: 120  HLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEG------- 172

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
                                  +TD  SLDWKKMKIPPVLPSSEH WLFKLMQP+KAILQ
Sbjct: 173  ----------------------ATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQ 210

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
            VKENLQ+DLGREPTDGE+AEATNMD  ELRKK+E GRAARNKLIKHNLRLVLFVMNKYFQ
Sbjct: 211  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQ 270

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFAN  +FQDLCQAGVKGLITAIDRFEP R FRLSTYGLFWIRHAIIR MT SSFTKV F
Sbjct: 271  DFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPF 330

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLES+RVEIQKAKLELLFEL R+PT++EII+RVG SPERYHEVM+ SKPI SLH+R+  T
Sbjct: 331  GLESIRVEIQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTT 390

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEE INGITDVDGV+ GDKR+QPA             KPKESLVIRQRYGLDGKGDRTLG
Sbjct: 391  QEELINGITDVDGVD-GDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 449

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVY 1868
            EIAGNLNISREMVRKHEVKALMKLKHP RVDY+RRY++
Sbjct: 450  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYIF 487


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 520

 Score =  674 bits (1738), Expect = 0.0
 Identities = 354/520 (68%), Positives = 413/520 (79%), Gaps = 3/520 (0%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKL-STRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEI 491
            MGVVTVSSS +RTPLGL+  L S++ S  R+P I++F+T K+   ALVAPQE + LP+E 
Sbjct: 1    MGVVTVSSSVSRTPLGLSTNLVSSQRSTLRKPLIVAFRTDKSDKKALVAPQEKVPLPIET 60

Query: 492  SKKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELK 671
             KK +KR  ++ + P+ VK   I++     LELDYNEAAAKLE++YKRSP T   + E  
Sbjct: 61   GKKVQKRLGKARKLPKSVKAALIEEAPTCDLELDYNEAAAKLENLYKRSPETEASDVENV 120

Query: 672  DH-EVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXX-LNLEKRIALRKKKETEIVV 845
            D   +KRG+ RRK + E  ++  K T+ +IV          L+L+KR+AL+  K+ ++  
Sbjct: 121  DGLMIKRGRKRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVAA 180

Query: 846  SSKSKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKA 1025
            S   K++    E   +  LVREYS STD VSLDWKKM+IPPVL SSEH WLFKLMQP+K 
Sbjct: 181  SVVRKRKDKRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKG 240

Query: 1026 ILQVKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNK 1205
            +L+VKE LQ DLGREP  GELAEATNM VV++++ +EVGRAARNKLIKHNLRLVLFV+NK
Sbjct: 241  LLEVKEILQKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINK 300

Query: 1206 YFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTK 1385
            YFQDFANGPKFQDLCQAGVKGLITAIDRFEP+R FRLSTYGLFWIRHAIIRSMTLSSFT+
Sbjct: 301  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTR 360

Query: 1386 VSFGLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRH 1565
            VSFGLESVR EIQKAKLE+L +L RMPTE+EIIE+VGISPERYHEVMRASKP+ SL+SRH
Sbjct: 361  VSFGLESVRAEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRH 420

Query: 1566 SVTQEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDR 1745
            SVTQEEFINGITDVDGV+ GD RR+PA             KPKESLVIRQRYGLDGKGDR
Sbjct: 421  SVTQEEFINGITDVDGVD-GDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDR 479

Query: 1746 TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 480  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 519


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
            gi|567858878|ref|XP_006422122.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Citrus
            sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Citrus
            sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Citrus
            sinensis] gi|557523994|gb|ESR35361.1| hypothetical
            protein CICLE_v10004760mg [Citrus clementina]
            gi|557523995|gb|ESR35362.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
          Length = 513

 Score =  660 bits (1703), Expect = 0.0
 Identities = 344/517 (66%), Positives = 410/517 (79%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVT+SSS AR+P+GL+  +S R S  +RP I++FK  K+ N AL +PQE + LP+E  
Sbjct: 1    MGVVTISSSPARSPIGLST-ISHR-STSKRPLIVAFKADKSNNQALFSPQEQIPLPIETP 58

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            K+++KR   S +  ERVK +  D+ +P TL++DYNEAAAKLE+IYK SPA +  E +  D
Sbjct: 59   KRHQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYAD 118

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
              VKRG+ RRK + E +++++  +   +V         L+L+KRI LRK ++ ++V  +K
Sbjct: 119  GVVKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVV--TK 176

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
            ++K    DE  KI +LVREYS STD VSLDWKKMKIPPVL S+EH WLFKLMQP+K  +Q
Sbjct: 177  TRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQ 236

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
            VKE LQ DLGREPTD ELAEATNM   +++K +EVGRAARNKLIKHNLRLVLFV+ KYFQ
Sbjct: 237  VKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQ 296

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFANGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSFT+V F
Sbjct: 297  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPF 356

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLESVR EIQ+AKLELLFEL R+PT+EEII+ V ISPERY EVM+ASKPI+SLHSRH VT
Sbjct: 357  GLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVT 416

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEEFINGITDVDGVE  + +RQPA             KPKESLVIRQR+GLDGKGDRTLG
Sbjct: 417  QEEFINGITDVDGVE-NENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLG 475

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            EIAGNLNISREMVRKHEVK LMKLKHP RVDYLR+++
Sbjct: 476  EIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 512


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  660 bits (1703), Expect = 0.0
 Identities = 348/521 (66%), Positives = 408/521 (78%), Gaps = 4/521 (0%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVTVSS+AARTP  L  K S   S  +RPSI++FK  K  N  LV+P E +TLP+E +
Sbjct: 1    MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
             + +KRS  + +  +RVK + ID+ TP +L+LDYNEAAAKLE+I+K SP T D + E KD
Sbjct: 61   NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 120

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
               KRGQ R       K+ AN+     IV         L+L+KRIAL+ KKE + V   +
Sbjct: 121  GRSKRGQKR------SKKSANR-PGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLR 173

Query: 855  SKKRT----DHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLK 1022
             +K T    D  ++ +I+RLVR+YS STD VSLDWKKMKIPPVLPSSEH  LFKL+QP+K
Sbjct: 174  KQKDTKNEADEIDDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMK 233

Query: 1023 AILQVKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMN 1202
            A+++V+E LQ  LGREPT+GELA ATNM+V+++R+++EVGRAARNKLIKHNLRLVLFV+N
Sbjct: 234  ALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVIN 293

Query: 1203 KYFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFT 1382
            KYF+DFA+GPKFQDLCQAGVKGLITAIDRFEPKR FRLSTY LFWIRHAIIRSMTLSSFT
Sbjct: 294  KYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFT 353

Query: 1383 KVSFGLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSR 1562
            +VSFGL+SVRVEIQ+AKLELL ELHR+PTE EI  +VGIS ERY EVMRA+KP+ SLHSR
Sbjct: 354  RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSR 413

Query: 1563 HSVTQEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGD 1742
            HS T EE INGITDV+G  GGD RRQPA             KPKESLVIRQRYGLDGKG+
Sbjct: 414  HSTTSEELINGITDVEGT-GGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGN 472

Query: 1743 RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 473  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 513


>gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 517

 Score =  659 bits (1699), Expect = 0.0
 Identities = 348/521 (66%), Positives = 406/521 (77%), Gaps = 4/521 (0%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLST-RVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEI 491
            MGVVTVSSSA+RTPLGL+ K S+ R S  ++P I++FK  K+    LVAPQ+ + LP+E 
Sbjct: 1    MGVVTVSSSASRTPLGLSLKFSSNRSSVLKKPLIVAFKGDKSNKTVLVAPQDQIILPVET 60

Query: 492  SKKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELK 671
             K+ + R  ++ +   RVK ++ D+ + ST+E+DYNEAAAKLE+I+K S A  +    L 
Sbjct: 61   RKEVKSRVGKAKKSSNRVKAVATDEASTSTMEVDYNEAAAKLENIFKLSSADVEDAVGL- 119

Query: 672  DHEVKRGQHRRKAV--EEDKEEANKGTAAN-IVXXXXXXXXXLNLEKRIALRKKKETEIV 842
                 RG+ RR  V  E D+    K T ++ +V         L+L KR+ L++ KE  + 
Sbjct: 120  ---TSRGRRRRSKVIGESDERAGKKSTTSDTVVRNRKKKAKRLSLHKRVELKRDKEENVA 176

Query: 843  VSSKSKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLK 1022
            V    K+R   +EE KI +LVREYS STD VSLDWKKMKIPPVLPSSEH WLFKLMQPLK
Sbjct: 177  VVLVRKRRESLNEEEKIEKLVREYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPLK 236

Query: 1023 AILQVKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMN 1202
             + QV E+LQ  LGREPT+ ELAEATN+ VV++++ +E GRAARNKLIKHNLRLVLFVMN
Sbjct: 237  QLFQVGEDLQKTLGREPTENELAEATNISVVQVKRHLEAGRAARNKLIKHNLRLVLFVMN 296

Query: 1203 KYFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFT 1382
            KYFQDF NGPKFQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSFT
Sbjct: 297  KYFQDFTNGPKFQDLCQAGVRGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT 356

Query: 1383 KVSFGLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSR 1562
            +VSFGLESVR EIQKAK+EL FEL R+PTEEEIIE+VGISPERYHEVMRASKP+ISL+SR
Sbjct: 357  RVSFGLESVRAEIQKAKIELTFELKRLPTEEEIIEKVGISPERYHEVMRASKPVISLNSR 416

Query: 1563 HSVTQEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGD 1742
            H  TQEEFIN ITDVDGV+ GD RR+PA             KPKESLVIRQRYGLDGKGD
Sbjct: 417  HVTTQEEFINAITDVDGVD-GDDRRKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGD 475

Query: 1743 RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 476  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYM 516


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score =  657 bits (1695), Expect = 0.0
 Identities = 348/523 (66%), Positives = 410/523 (78%), Gaps = 6/523 (1%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVTVSS+AARTP  L  K S   S  +RPSI++FK  K  N  LV+P E +TLP+E +
Sbjct: 1    MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
             + +KRS  + +  +RVK + ID+ TP +L+LDYNEAAAKLE+I+K SP T D + E KD
Sbjct: 61   NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 120

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKK------KETE 836
               KRGQ R       K+ AN+     IV         L+L+KRIAL+ K      KE +
Sbjct: 121  GRSKRGQKR------SKKSANR-PGDGIVRNQTKRIKRLDLDKRIALKNKRKAKRNKEGK 173

Query: 837  IVVSSKSKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQP 1016
             V S + +K T ++++ +I+RLVR+YS STD VSLDWKKMKIPPVLPSSEH  LFKL+QP
Sbjct: 174  AVPSLRKQKETKNEDD-EIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQP 232

Query: 1017 LKAILQVKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFV 1196
            +KA+++V+E LQ  LGREPT+GELA ATNM+V+++R+++EVGRAARNKLIKHNLRLVLFV
Sbjct: 233  MKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFV 292

Query: 1197 MNKYFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSS 1376
            +NKYF+DFA+GPKFQDLCQAGVKGLITAIDRFEPKR FRLSTY LFWIRHAIIRSMTLSS
Sbjct: 293  INKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSS 352

Query: 1377 FTKVSFGLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLH 1556
            FT+VSFGL+SVRVEIQ+AKLELL ELHR+PTE EI  +VGIS ERY EVMRA+KP+ SLH
Sbjct: 353  FTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLH 412

Query: 1557 SRHSVTQEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGK 1736
            SRHS T EE INGITDV+G  GGD RRQPA             KPKESLVIRQRYGLDGK
Sbjct: 413  SRHSTTSEELINGITDVEGT-GGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGK 471

Query: 1737 GDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            G+RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 472  GNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 514


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
            sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  653 bits (1685), Expect = 0.0
 Identities = 347/517 (67%), Positives = 401/517 (77%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVV+VSSSA+RTPLGL+ K ST  S  +RP I++FK  K+ N +LVAP E + LP+E +
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKANKSNNTSLVAPHEQIPLPVETT 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            K  +KR  +S +   R+K +  +  +P TL +DYNEAAAKLE+IYK SP T   + E   
Sbjct: 61   K-GKKRLGKSKKSSNRLKAVRTEV-SPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
              ++RG+ R++ + E  +E    T   IV         L+LEKRI+LR K E E +VSS 
Sbjct: 119  GVIRRGRQRKRKISEGDKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNE-EKLVSSA 177

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             K++   +E  KI+ LVREYS STD VSLDWKKMKIPPVL SSEH WLFKLMQP+KA+LQ
Sbjct: 178  GKRKDRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQ 237

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
            VKE+LQ +LG EPTD ELA+ATNMDV+++RK++ VGRAARNKLIKHNLRLVLFV+ KYFQ
Sbjct: 238  VKEHLQENLGGEPTDVELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQ 297

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFANG KFQD CQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTLSSFT+VSF
Sbjct: 298  DFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 357

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLES+R EIQKAKLEL F+L R P E+EIIE+V ISPERYHEV RASKP++SLHSRH  T
Sbjct: 358  GLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTT 417

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEEFI GI DVD   GGD RRQ A             KPKESLV+RQRYGLDGKGDRTLG
Sbjct: 418  QEEFIGGIADVD---GGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLG 474

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            EIAGNLNISREMVRKHEVKALMKLKHP RVDYLRRYV
Sbjct: 475  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYV 511


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  651 bits (1680), Expect = 0.0
 Identities = 344/517 (66%), Positives = 402/517 (77%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVT SSSAARTPLGL+ K ST  S  +R  +++FK  K  +  LV P+E   LP+E S
Sbjct: 1    MGVVTASSSAARTPLGLSLKFSTYRSTVKRSLVVAFKEDKANDIILVPPRERTPLPIETS 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            K  ++R + +             + +  TLE+DYNEAAAKLE+IYK SPAT   + ++  
Sbjct: 61   KGKKRRGKTN------------REVSSGTLEVDYNEAAAKLENIYKLSPATDTSDVDING 108

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
              +++G+ R++   E  E+A   T+  IV         L+L+KRIAL+K +E E+V   +
Sbjct: 109  L-IRKGRQRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIR 167

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             KK +  D E KI  LVR YS ST+ VSLDW+KMKIPPVLPS+EHAWLFKLMQP+K +L 
Sbjct: 168  KKKDSKDDNE-KIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLP 226

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
            VK +LQ +LGR+PTDGELAEATNM+V ++RK++EVGRAARNKLIKHNLRLV+FVMNKYFQ
Sbjct: 227  VKADLQKNLGRDPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQ 286

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFANGP+FQDLCQAGVKGLITAIDRFEP+R F+LSTY LFWIRHAIIRSMTLSSFTKVSF
Sbjct: 287  DFANGPRFQDLCQAGVKGLITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTKVSF 346

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLESVR EIQKAKLELL EL R PTEEEIIERVGIS ERYHEV+RA+KP +SLH+RH+VT
Sbjct: 347  GLESVRTEIQKAKLELLIELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVT 406

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEEFINGITD+D   GGD RRQPA             KPKESLVIRQRYGLDGKGDRTLG
Sbjct: 407  QEEFINGITDID---GGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 463

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            EIAGNLNISREMVRK+EVKALMKLKHPARVDYLRRYV
Sbjct: 464  EIAGNLNISREMVRKYEVKALMKLKHPARVDYLRRYV 500


>ref|XP_002333134.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  650 bits (1677), Expect = 0.0
 Identities = 346/517 (66%), Positives = 400/517 (77%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVV+VSSSA+RTPLGL+ K ST  S  +RP I++FK  K+ N +LVAP E + LP+E +
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSNNTSLVAPHEQIPLPVETT 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            K  +KR  +S +   R+K +  +  +P TL +DYNEAAAKLE+IYK SP T   + E   
Sbjct: 61   K-GKKRLGKSKKSSNRLKAVRTEV-SPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
              ++RG+ R++ + E  +E    T   IV         L+LEKRI+LR K E E +VSS 
Sbjct: 119  GVIRRGRQRKRKISEGGKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNE-EKLVSSA 177

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             K++   +E  KI+ LVREYS STD VSLDWKKMKIPPVL SSEH WLFKLMQP+KA+LQ
Sbjct: 178  GKRKDRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQ 237

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
            VKE+LQ +LG EPTD ELA+A NMDV+++RK++ VGRAARNKLIKHNLRLVLFV+ KYFQ
Sbjct: 238  VKEHLQENLGGEPTDVELAKAINMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQ 297

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFANG KFQD CQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTLSSFT+VSF
Sbjct: 298  DFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 357

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLES+R EIQKAKLEL F+L R P E+EIIE+V ISPERYHEV RASKP++SLHSRH  T
Sbjct: 358  GLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTT 417

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEEFI GI DVD   GGD RRQ A             KPKESLV+RQRYGLDGKGDRTLG
Sbjct: 418  QEEFIGGIADVD---GGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLG 474

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            EIAGNLNISREMVRKHEVKALMKLKHP RVDYLRRYV
Sbjct: 475  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYV 511


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Glycine max]
            gi|571496981|ref|XP_006593757.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
          Length = 512

 Score =  642 bits (1656), Expect = 0.0
 Identities = 330/517 (63%), Positives = 404/517 (78%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGV+TVS+SAARTPL LN +L +     +RP IL+FK  K+    LV+PQE + LP+E +
Sbjct: 1    MGVITVSTSAARTPLRLNTRLISHQQVHKRPIILAFKGNKSNKTTLVSPQEKIPLPLETA 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            KK++KR  ++    +RV+ +S  + +P TL++DYNEAAAKLE+IYK SP +  C  E  D
Sbjct: 61   KKHQKRVGKTSESLKRVRAVSTVETSPCTLDVDYNEAAAKLENIYKLSPVSDTCNVEDID 120

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
             +++R   RRK V E++++ N     N+V         L+L+KRIAL+   + E V+   
Sbjct: 121  SKIERVLRRRKKVSEERDDGN---CDNVVRNQNKKAKRLSLDKRIALKNNAKEE-VIDQT 176

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             KKR   +    I+ L+R+YS STD VS+DWKKMKIPPVLPSSEHAWLFKLMQP+KA+LQ
Sbjct: 177  QKKRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQ 236

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
             KE+L+ ++ +E T GELA+ATNM ++++RK +EVGRAARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 237  AKEDLK-EVDKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQ 295

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFA+GP+FQDLCQAGVKGLITAIDRFEPKR  +LSTY LFWIRH+I+RS+TLSSFT+V F
Sbjct: 296  DFASGPRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPF 355

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLE VRV+IQ+ KL+L FEL R PTEEE++ER+GIS ERYHEVM+ASKPI+SLHSRH  T
Sbjct: 356  GLERVRVDIQRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILSLHSRHITT 415

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEE+INGITDVDGV  GD RRQ A             KPKESLVIRQRYGLDGKGDRTLG
Sbjct: 416  QEEYINGITDVDGV-NGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 474

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            EIAGNLNISRE+VRKHEVKALMKLKHPAR+DYLRRYV
Sbjct: 475  EIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYV 511


>ref|XP_002331841.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  636 bits (1640), Expect = e-179
 Identities = 335/517 (64%), Positives = 406/517 (78%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MG+V+VSSSA+ TPLG + K ST  S  +RP I++FK  K+   ALVAP E + LP+E +
Sbjct: 1    MGIVSVSSSASWTPLGFSTKFSTCRSTAKRPLIVAFKADKSNETALVAPHEQIPLPIETT 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            K+ ++R + S +  +R+K +  +  +P TL +DYNEAAAKLE+IYK SP T   + E  +
Sbjct: 61   KEKKRRGK-SKKSSDRLKAVRTEV-SPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVN 118

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
              ++R + R++   E ++E +  T+  IV         L+L+KRIALR K + E +V+S 
Sbjct: 119  GVIRRCRQRKRKTSECEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIKSD-EKLVTSV 177

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             K++   +E  KI+ LVREYS+STD  SLDWKKMKIPPVL S+EHAWLFKLMQP+KA LQ
Sbjct: 178  GKRKGRKNENEKIDELVREYSSSTDLASLDWKKMKIPPVLTSAEHAWLFKLMQPMKASLQ 237

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
            VKE+LQ + GREPT+GELAEAT+MDV+++RK++EVGRAARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 238  VKEHLQENSGREPTEGELAEATDMDVLQVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQ 297

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            D+ANGP++QDLCQAGVKGL+TAIDRFEPKR FRLSTYGLFWIRHAIIRSMTLSSFT+VSF
Sbjct: 298  DYANGPRYQDLCQAGVKGLMTAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 357

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLES+R EIQKAKLEL F+L R PT EEIIE+VGIS ERYHEVMRASKP++SLHSRH  T
Sbjct: 358  GLESIRSEIQKAKLELWFQLLRKPTGEEIIEKVGISIERYHEVMRASKPVLSLHSRHKTT 417

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEE I+G+ DV+   GGD RRQ A             KPKESLV+RQR+GLDGKGDRTLG
Sbjct: 418  QEELISGVADVN---GGDDRRQSALLRLALDDVLDSLKPKESLVVRQRFGLDGKGDRTLG 474

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            EIAGNLNISREMVRKHE KALMKLKHP RVDYL RYV
Sbjct: 475  EIAGNLNISREMVRKHEAKALMKLKHPTRVDYLCRYV 511


>ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glycine max]
            gi|382365028|dbj|BAM05477.1| sigma-like factor 5A
            [Glycine max]
          Length = 512

 Score =  632 bits (1631), Expect = e-178
 Identities = 330/517 (63%), Positives = 402/517 (77%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVTVS+ AARTPL LN +L++     +RP I++FK  K   AALV+PQE + LP+E +
Sbjct: 1    MGVVTVSTLAARTPLRLNTRLTSHQQVHKRPLIVAFKGNKLNKAALVSPQEQIPLPIETA 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            KK++KR  ++    +RV+ +SI + +P TL++DYNEAAAKLE+IYK SP +  C  E  D
Sbjct: 61   KKDQKRVGKTSESLKRVRAVSIVETSPCTLDMDYNEAAAKLENIYKLSPVSDTCNMEDID 120

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
             +V+R   RR+ V  + ++ N      +V         L+L+KRI L+   + E V+   
Sbjct: 121  SKVERVLWRRRKVGNEHDDENCDI---VVRNQNKKAKRLSLDKRITLKNNAKEE-VIDQT 176

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             K R   +    I+ L+R+YS STD VS+DWKKMKIP VLPSSEHAWLFKLMQP+KA+LQ
Sbjct: 177  QKIRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPAVLPSSEHAWLFKLMQPMKALLQ 236

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
             KE+LQS +G+E TDGELA+ATNM ++++RK +EVGRAARNKLIKHNLRLVLFV++KYFQ
Sbjct: 237  AKEDLQS-VGKEITDGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVISKYFQ 295

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFA+G +FQDLCQAGVKGLITAIDRFEPKR  +LSTY LFWIRH+I+RS+TLSSFT+V F
Sbjct: 296  DFASGRRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPF 355

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GLE VRV+IQ+ KL+L FEL R PTEEE++ER+GISPERY+EVM+ASKPI+SLHSRH  T
Sbjct: 356  GLERVRVDIQRTKLKLTFELQRSPTEEELVERIGISPERYYEVMKASKPILSLHSRHITT 415

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEE+INGITDVDGV  GD RRQ A             KPKESLVIRQRYGLDGKGDRTLG
Sbjct: 416  QEEYINGITDVDGV-NGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 474

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            EIAGNLNISREMVRKHEVKALMKLKHPAR+DYLRRYV
Sbjct: 475  EIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYV 511


>gb|ESW33340.1| hypothetical protein PHAVU_001G061400g [Phaseolus vulgaris]
          Length = 511

 Score =  629 bits (1623), Expect = e-177
 Identities = 323/517 (62%), Positives = 408/517 (78%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVTVS+SAARTPL L+ KL +     +R  I++FK  K     LV+P+E + LP+E +
Sbjct: 1    MGVVTVSTSAARTPLRLSTKLISLQQAHKRLLIVAFKGNKLNKTTLVSPKEQIPLPLETA 60

Query: 495  KKNEKRSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELKD 674
            KK+ KR  ++    +RV+ +S D+ TP TL++DYNEAAAKLE+IYK S  +S C+TE  D
Sbjct: 61   KKHRKRIGKTNDSVKRVRAVSTDETTPFTLDVDYNEAAAKLENIYKLSSVSSTCDTEDID 120

Query: 675  HEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVSSK 854
             + KR   RRK V ++ ++ N G+   +V         L+L+KRIAL++  + E++V ++
Sbjct: 121  SKTKRVLRRRKNVGDEHDDRNDGS---VVRNQNKKAKRLSLDKRIALKRNPKQEVIVQAQ 177

Query: 855  SKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAILQ 1034
             K+  +  E   I+ L+REYS STD VS+DWKK+KIPPVLPSSEHAWLFKLM+P+K +LQ
Sbjct: 178  KKRDVNRIEN--IDALIREYSASTDLVSMDWKKIKIPPVLPSSEHAWLFKLMEPMKELLQ 235

Query: 1035 VKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKYFQ 1214
            V+E+LQ ++G+E +DGELA+A ++ V+++RK +EVG+AARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 236  VREDLQ-EVGKEISDGELADANSISVIQVRKALEVGQAARNKLIKHNLRLVLFVINKYFQ 294

Query: 1215 DFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKVSF 1394
            DFA+GP+FQDLCQAGVKGLITAIDRFE KR  +LSTY LFWIRH+I+RS+TLSS T+V F
Sbjct: 295  DFASGPRFQDLCQAGVKGLITAIDRFESKRRLQLSTYSLFWIRHSIVRSITLSSLTRVPF 354

Query: 1395 GLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHSVT 1574
            GL+ VR +I +AKLEL FEL R PTE+E++ER+GISPERY++V++ASKPIISLHSRH VT
Sbjct: 355  GLDRVRADIHRAKLELRFELQRSPTEKEVVERIGISPERYYDVLKASKPIISLHSRHIVT 414

Query: 1575 QEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRTLG 1754
            QEEFINGITD+DGV+ GD RRQ A             KPKESLV+RQRYGLDGKGDRTLG
Sbjct: 415  QEEFINGITDLDGVD-GDNRRQLAVLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLG 473

Query: 1755 EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            EIAGNLNISREMVRKHEVKALMKLKHPAR+DYLRRYV
Sbjct: 474  EIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYV 510


>ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
          Length = 507

 Score =  620 bits (1598), Expect = e-174
 Identities = 331/519 (63%), Positives = 402/519 (77%), Gaps = 2/519 (0%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVVTVSSSAARTPLGLN K     ++ +RP I++FK  K  ++ALVA QE + +P+E +
Sbjct: 1    MGVVTVSSSAARTPLGLNTKFCN--NRLKRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 495  KKNEK-RSRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETELK 671
            KK +K R  ++ + P+R       + +PS++++DYNEAAA LE++YK SPA+ + E    
Sbjct: 59   KKTQKKRIGKTNKLPKR-------ESSPSSMDVDYNEAAAMLENLYKLSPASDNAECI-- 109

Query: 672  DHEVKRGQHR-RKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVVS 848
            D ++KR   R +K V+E +E+  KG               LNL++RI+L+  K  + V+ 
Sbjct: 110  DGKIKRVSRRGKKVVDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSGDEVIP 169

Query: 849  SKSKKRTDHDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLKAI 1028
            ++ K+   +  E KI  L+REYS STDFVS+DWK+M+IPPVL SSEHAWLFKLMQP+KA+
Sbjct: 170  TRKKRNVGNKIE-KIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKAL 228

Query: 1029 LQVKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMNKY 1208
            LQVKE+LQ +L REP DGELA+ATNM + ++RK ++VG+AARNKLIKHNLRLVLFV+NKY
Sbjct: 229  LQVKEDLQQELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFVINKY 288

Query: 1209 FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTKV 1388
            F DFA+GP+FQDLCQAGVKGLITAIDRFEP R FRLSTY LFWIRHAIIRSMTLS+FT+V
Sbjct: 289  FTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRV 348

Query: 1389 SFGLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSRHS 1568
             FGLESVR EIQKAK EL FEL R PTEEEIIERV ISPERYH+V++ASK I+SL+SRH+
Sbjct: 349  PFGLESVRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHT 408

Query: 1569 VTQEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGDRT 1748
             TQEEFINGI D DGV  GD R+QPA             KPKESLVIRQR+GLDGKGDRT
Sbjct: 409  TTQEEFINGIVDDDGV-NGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRT 467

Query: 1749 LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            LGEIAGNLNISREMVRKHEVKALMKLKH AR+DYLRRYV
Sbjct: 468  LGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYV 506


>dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]
          Length = 511

 Score =  619 bits (1596), Expect = e-174
 Identities = 331/521 (63%), Positives = 397/521 (76%), Gaps = 4/521 (0%)
 Frame = +3

Query: 315  MGVVTVSSSAARTPLGLNAKLSTRVSQQRRPSILSFKTGKTKNAALVAPQESLTLPMEIS 494
            MGVV +SSSAAR+PLGL++ L T  S  ++PSI++FK   + N+AL+ P E + +P E  
Sbjct: 1    MGVVFISSSAARSPLGLSSDLLTHRSSLKKPSIVAFKADDSTNSALIIPSEQILIPAE-- 58

Query: 495  KKNEKR---SRRSVRHPERVKVISIDQETPSTLELDYNEAAAKLEHIYKRSPATSDCETE 665
            K+ EKR    R+  + P++   +  +     +L +DYNEAAA+LE IYK SPATS  E +
Sbjct: 59   KQKEKRVVTKRKPCKTPKKPSSLDHNLAPSCSLGVDYNEAAARLESIYKLSPATS-VEDD 117

Query: 666  LKDHEVKRGQHRRKAVEEDKEEANKGTAANIVXXXXXXXXXLNLEKRIALRKKKETEIVV 845
            +   +VK  + RR+  +E  EE        +V         L+L+KRIAL++  + + +V
Sbjct: 118  IDGSKVKVSRRRRR--KEGGEEKKV-----VVRNNGMKEKRLSLDKRIALKRNIQEKPLV 170

Query: 846  SSKSKKRTD-HDEEGKINRLVREYSTSTDFVSLDWKKMKIPPVLPSSEHAWLFKLMQPLK 1022
             S  KK T    EE KI RLVR+YS S D VSLDWKKMKIPPVLPS+EHAWLFKLMQP+K
Sbjct: 171  PSAQKKVTKKQQEEEKIERLVRDYSASHDIVSLDWKKMKIPPVLPSTEHAWLFKLMQPMK 230

Query: 1023 AILQVKENLQSDLGREPTDGELAEATNMDVVELRKKMEVGRAARNKLIKHNLRLVLFVMN 1202
            A+LQVK+ LQ  LGREP + E+A   NM   E+++K+E+GRAARNKLIKHNLRLVLFVMN
Sbjct: 231  ALLQVKDELQKSLGREPRETEIAGEINMSAAEVKRKIEIGRAARNKLIKHNLRLVLFVMN 290

Query: 1203 KYFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFT 1382
            KYFQDF NGPKFQDLCQAG++GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT S+FT
Sbjct: 291  KYFQDFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFT 350

Query: 1383 KVSFGLESVRVEIQKAKLELLFELHRMPTEEEIIERVGISPERYHEVMRASKPIISLHSR 1562
            +V FGLESVRVEI K K+ELLFEL R+PTE+E++ER+ ISPERY EV+RA+KP+ SL+S+
Sbjct: 351  RVPFGLESVRVEIYKTKMELLFELGRLPTEDEVVERLKISPERYREVLRAAKPVFSLNSK 410

Query: 1563 HSVTQEEFINGITDVDGVEGGDKRRQPAXXXXXXXXXXXXXKPKESLVIRQRYGLDGKGD 1742
            HSVTQEEFINGITDVDGV G D RRQPA             KPKESLVIRQRYGLDGKGD
Sbjct: 411  HSVTQEEFINGITDVDGV-GADNRRQPAILRLALDDVLDSLKPKESLVIRQRYGLDGKGD 469

Query: 1743 RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 1865
            RTLGEIAGNLNISREMVRKHEVKALMKLKH ARVDYLR+Y+
Sbjct: 470  RTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYI 510