BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00000778
         (4749 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  1707   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1696   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1613   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1612   0.0  
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...  1541   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1509   0.0  
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...  1501   0.0  
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...  1494   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1476   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1467   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1443   0.0  
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr...  1424   0.0  
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...  1421   0.0  
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus...  1415   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...  1414   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...  1399   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1398   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1395   0.0  
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]  1394   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...  1364   0.0  

>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 1707 bits (4422), Expect = 0.0
 Identities = 873/1369 (63%), Positives = 1039/1369 (75%), Gaps = 24/1369 (1%)
 Frame = +2

Query: 653  EGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCK 832
            +G SEAVE V FSFMTDEEVRRHSVVK+T+P LLD +  P P GLYDPAMGPLD  S CK
Sbjct: 3    QGASEAVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCK 62

Query: 833  SCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLE 1012
             C Q   +C GHCGHI+LVSP YNPL+FNMLH LL+ TCF+CFHFR+S+ EV  CVS+LE
Sbjct: 63   FCCQS--NCSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELE 120

Query: 1013 LIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASEDDFTE 1192
            LIAKGDV+GA+ +D                                     A S D+ T+
Sbjct: 121  LIAKGDVVGAKMID-------------------------------------ALSPDNSTD 143

Query: 1193 HEDSERSHLSSSITVYDGAEDYSENNQR-RWDSFQFTEAMRVLNKFLKSKPRKCSNCEAK 1369
             E+SE SH+S ++   +  +D+ E N+R  WD+FQFTEAM V+++ LK+K  KCSNC+AK
Sbjct: 144  REESEGSHMSCAMDDLN-MQDHREYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAK 202

Query: 1370 NPKIKKPTFGWFLMETVSGSAVRANIIRGHK---------IEDEYSSLVVNSSWEDDLNT 1522
            NPKI+KP+FG F M+ +S   +R N I   +          E+  S  VVN++  + L  
Sbjct: 203  NPKIRKPSFGRFHMD-ISNKQIRENYINSGRRFNLHDTGGSEENPSPEVVNAT--EPLGE 259

Query: 1523 TETDXXXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASL 1702
             ET               +     +     E+Q + F    LPS+VR ++ HLW NEA L
Sbjct: 260  AETSLCVTSTDGVENSKARKRQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPL 319

Query: 1703 CSFICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQ 1882
            C+F CDIQ +  + S K  G S+FFL SILVPP KFRP AKGGDS+MEH  T+LLGKV+Q
Sbjct: 320  CTFFCDIQSQHHNTSGKVAGPSMFFLDSILVPPIKFRPPAKGGDSIMEHPHTVLLGKVVQ 379

Query: 1883 SXXXXXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGI 2062
            +             R +I++R +DLQQS+NVL+DSKT    G+K+  SGICQ+LEKKEGI
Sbjct: 380  ANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGI 439

Query: 2063 FRQKMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNG 2242
            FRQKMMGKRVNFACR+VISPDPY++VNEIGIPPYFALRLTYPER+TPWN  K+RDA++NG
Sbjct: 440  FRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALRLTYPERLTPWNAVKMRDAVING 499

Query: 2243 PEVHPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHL 2422
            PE HPGA+S+AD+++TV+LPS++K+R+AISRKLPSSRG VT+SG+N+EYEFEGK+VYRHL
Sbjct: 500  PENHPGAVSFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHL 559

Query: 2423 QDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDE 2602
            QDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDE
Sbjct: 560  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 619

Query: 2603 ISRAEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGI 2782
            ISRAEAYNIVNANEQYI+PTKGDTVRGLIQDHIV AV+LTMK+TFLTL EFNQLLYGSG+
Sbjct: 620  ISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGV 679

Query: 2783 FAMAPGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFT 2962
            FA  P   S N   KVS+VD EGV+  VLPAVWKPKPLWTGKQVITALLNHLT+GC P T
Sbjct: 680  FAAGPAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTKGCAPCT 739

Query: 2963 LEKEIKIPDQYFQREHKNVQ---QIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVH 3133
            ++ + KIP  YF  E + V+   + + E + +EN  +IWKNELV+GVIDKAQFG+FGLVH
Sbjct: 740  VKNKGKIPYPYFLSESRLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVH 799

Query: 3134 TIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD-QDVGKE 3310
            TIQELYGSN AG+LLSA SRLFTIFLQ HGFTCGVDDLVILP  D++RKE L+  DVG+E
Sbjct: 800  TIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEE 859

Query: 3311 VHSQFVN-RDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEKISKELLLTE 3487
             H  FV  +  +I P ELQ E+EK +  N+E+AT +LD++M+ K  ++  + +KELLL  
Sbjct: 860  AHCDFVKFKRGEIGPLELQLEIEKAMSSNKEAATAALDMKMKNKLANKGSQFNKELLLKG 919

Query: 3488 LLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFT 3667
            LLKPFP+NCI+LMT++GAKG TVNFQQISS+LGQQ+LEGKRVPRMVSGKTLPCFPPWD  
Sbjct: 920  LLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCA 979

Query: 3668 SRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYD 3847
            SRAGGYV+DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYD
Sbjct: 980  SRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYD 1039

Query: 3848 YSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDKLPE 4027
            Y+VRDADGSI+QF YGEDG DVHRTSFL+NF AL NNQET+ QK ++    N+YI+KLP+
Sbjct: 1040 YTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGRKLNSYIEKLPD 1099

Query: 4028 GLEKDAESFLKNLKNPESKEFSKISK--------IANHADFLKLVNQKYLSSLAPPGEPV 4183
            GLE+  + F +       K+  K+ K            ADFL+LV QKY SSLA  GEPV
Sbjct: 1100 GLEEKVKHFWEKRTKKLEKKLGKLVKKEEMVKQLKEEEADFLELVRQKYFSSLADSGEPV 1159

Query: 4184 GVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCL 4363
            GV+A QS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASE IKTP+LTCPFL  
Sbjct: 1160 GVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGW 1219

Query: 4364 KSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIKFKSHDFISLEDL 4543
            +SK+DA SLL K+KKITVAD+IESMEV LLP S+  + V+++YKL +K K HDF+S ED 
Sbjct: 1220 QSKNDAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDC 1279

Query: 4544 EETLTHAFLRELEDAIQKHVDLLYGIGGIMN-STPGGCSDEVETYEDGS 4687
            E TL   FLRELEDAI+ H+ LL  I GI N  T     D  ET E+ S
Sbjct: 1280 EYTLKFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENAS 1328


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 1696 bits (4391), Expect = 0.0
 Identities = 865/1368 (63%), Positives = 1029/1368 (75%), Gaps = 23/1368 (1%)
 Frame = +2

Query: 653  EGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCK 832
            +G SE VE V FSFMTDEEVRRHSVVK+T+P LLD +  P P GLYDPAMGPLD  S CK
Sbjct: 3    QGASETVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCK 62

Query: 833  SCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLE 1012
             C Q   +C GHCGHI+LVSP YNPL+FNMLH LL+ TCF+CFHFR+S+ EV  CVS+LE
Sbjct: 63   FCSQS--NCSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELE 120

Query: 1013 LIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASEDDFTE 1192
            LIAKGDV+GA+ +D                                     A S D+ T+
Sbjct: 121  LIAKGDVVGAKMID-------------------------------------ALSPDNSTD 143

Query: 1193 HEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKN 1372
             E+SE SH+S ++   +  +    N +  WD+FQFTEAM V+++ LK+K  KCSNC+AKN
Sbjct: 144  REESEGSHMSCTMDDLNVRDHCEYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKN 203

Query: 1373 PKIKKPTFGWFLMETVSGSAVRANIIRGHK---------IEDEYSSLVVNSSWEDDLNTT 1525
            PKI+KP+FG F M+ +S   +R N I   +          E+  S  VVN++  + L   
Sbjct: 204  PKIRKPSFGRFHMD-ISNKQIRENYINSGRRFNLHDTGGSEENPSPEVVNAT--EPLGEA 260

Query: 1526 ETDXXXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLC 1705
            ET               +     +     E+Q + F    LPS+VR ++ HLW NEA LC
Sbjct: 261  ETSLCVTSTDGVENSKGRKRQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLC 320

Query: 1706 SFICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQS 1885
            +F CDIQ +  + S K  G S+FFL SILVPP KFRP AKGGDS+MEH  T+LLGKV+Q+
Sbjct: 321  TFFCDIQSQHRNTSGKVAGPSMFFLDSILVPPVKFRPPAKGGDSIMEHPHTVLLGKVIQA 380

Query: 1886 XXXXXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIF 2065
                         R +I++R +DLQQS+NVL+DSKT    G+K+  SGICQ+LEKKEGIF
Sbjct: 381  NIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIF 440

Query: 2066 RQKMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGP 2245
            RQKMMGKRVNFACR+VISPDPY++VNEIGIPPYFA RLTYPER+TPWN  K+RDA++NGP
Sbjct: 441  RQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASRLTYPERLTPWNAVKMRDAVINGP 500

Query: 2246 EVHPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQ 2425
            E HPGAIS+AD+++TV+LPS++K+R+AISRKLPSSRG VT+SG+N+EYEFEGK+VYRHLQ
Sbjct: 501  ENHPGAISFADRIATVKLPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQ 560

Query: 2426 DGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEI 2605
            DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDEI
Sbjct: 561  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEI 620

Query: 2606 SRAEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIF 2785
            SRAEAYNIVNANEQYI+PTKGDTVRGLIQDHIV AV+LTMK+TFL+L EFNQLLYGSG+F
Sbjct: 621  SRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLSLHEFNQLLYGSGVF 680

Query: 2786 AMAPGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTL 2965
            A  P   S N   KVS+VD EGV+  VLPAVWKPKPLWTGKQVITALLNHLT GC P T+
Sbjct: 681  AAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCTV 740

Query: 2966 EKEIKIPDQYFQREHKNVQ---QIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHT 3136
            + + KIP  YF  E + V+   + + E + +EN  +IWKNELV+GVIDKAQFG+FGLVHT
Sbjct: 741  KNKGKIPYAYFLSESRLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHT 800

Query: 3137 IQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD-QDVGKEV 3313
            IQELYGSN AG+LLSA SRLFTIFLQ HGFTCG+DDLVILP  D++RKE L+  DVG+E 
Sbjct: 801  IQELYGSNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEEA 860

Query: 3314 HSQFVN-RDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEKISKELLLTEL 3490
            H  FV  +  +I P ELQ E+EK I  N+E AT +LD++M+ K  ++  + +KELLL  L
Sbjct: 861  HCDFVKFKRGEIGPLELQLEIEKAISSNKEVATAALDMKMKNKLANKGSQFNKELLLKGL 920

Query: 3491 LKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTS 3670
            LKPFP+NCI+LMT++GAKG TVNFQQISS+LGQQ+LEGKRVPRMVSGKTLPCFP WD  S
Sbjct: 921  LKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCAS 980

Query: 3671 RAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDY 3850
            RAGGYV+DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYDY
Sbjct: 981  RAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDY 1040

Query: 3851 SVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDKLPEG 4030
            +VRDADGSI+QF YGEDG DVHRTSFL+NF AL NNQET+ QK ++    N+YI+KLP+G
Sbjct: 1041 TVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGCKLNSYIEKLPDG 1100

Query: 4031 LEKDAESFLKNLKNPESKEFSKISK--------IANHADFLKLVNQKYLSSLAPPGEPVG 4186
            L +  + F ++      K+   + K            ADFL+LV QKY SSLA  GEPVG
Sbjct: 1101 LGEKVKHFWESKTKKLEKKLGMLVKKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVG 1160

Query: 4187 VIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLK 4366
            V+A QS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASE IKTP++TCPFL  K
Sbjct: 1161 VLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWK 1220

Query: 4367 SKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIKFKSHDFISLEDLE 4546
            SK+DA SLL K+KKITVAD+IESMEV LLP S+  + V+++YKL +K K HDF+S ED E
Sbjct: 1221 SKNDAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCE 1280

Query: 4547 ETLTHAFLRELEDAIQKHVDLLYGIGGIMN-STPGGCSDEVETYEDGS 4687
             TL   FLRELEDAI+ H+ LL  I GI N  T     D  ET E+ S
Sbjct: 1281 YTLKFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENAS 1328


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1613 bits (4178), Expect = 0.0
 Identities = 834/1385 (60%), Positives = 1010/1385 (72%), Gaps = 39/1385 (2%)
 Frame = +2

Query: 650  TEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSC 829
            T G +E VE V FSF TDEEVR++S  KIT+P++LDSV RP PGGLYDPA+G +D+ + C
Sbjct: 54   TSGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPC 113

Query: 830  KSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQL 1009
            +SCGQR+F+CPGHCGHIDLVS  YNPL+FN+LH LL+ TCFFC HF++S   V   VSQL
Sbjct: 114  QSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQL 173

Query: 1010 ELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASEDDFT 1189
            ELI+KGDV+GA+ LD+                                      S  + +
Sbjct: 174  ELISKGDVVGAKNLDSI-------------------------------------SPSESS 196

Query: 1190 EHEDSERSHLSSSITVYDGAEDYSENN--QRRWDSFQFTEAMRVLNKFLKSKPRKCSNCE 1363
              EDS+ SH+S S TV   A D    +  Q+ W S Q  EAM V++ FLK K R C NC+
Sbjct: 197  YPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCK 256

Query: 1364 AKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSS------------WE 1507
            AK+P++ KPTFGWF M  +S +  RAN+IRG K+E   S +    S            W 
Sbjct: 257  AKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLSRVAEEKSSSEVENVNDMFPWG 316

Query: 1508 DDLNTTETDXXXXXXXXXXXXXXK--DPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHL 1681
            D ++T ET               K  +    ++  EF KQ +FF G LLPSEVR+++  L
Sbjct: 317  DGVDTDETHSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERL 376

Query: 1682 WNNEASLCSFICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTL 1861
            W NEA LCSFI DI +E+L  S    G S+FFL +ILVPP KFRP +KG  SVMEH QT+
Sbjct: 377  WENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTV 436

Query: 1862 LLGKVLQSXXXXXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQL 2041
            LLGKVLQ+            ER +I++RW+DLQQSINVL+D KT   QG+++  SGICQL
Sbjct: 437  LLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQL 496

Query: 2042 LEKKEGIFRQKMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKL 2221
            LEKKEG+FRQKMMGKRVNFACR+VISPDPY+AVNEIGIPPYFALRLTYPE+VTPWNV KL
Sbjct: 497  LEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKL 556

Query: 2222 RDAIVNGPEVHPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEG 2401
            RDAI+NGPE+HPGA  Y DK+STV+L  ++K+RI+ISRKLPSSRGVV + G++S+ EFEG
Sbjct: 557  RDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEG 616

Query: 2402 KIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMN 2581
            KIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDEMN
Sbjct: 617  KIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 676

Query: 2582 VHLPQDEISRAEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQ 2761
            VH PQDEISRAEAYNIVNAN QYI+P++GD +RGLIQDHIVSAVLLT KDTFLT +++NQ
Sbjct: 677  VHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQ 736

Query: 2762 LLYGSGIFAMAPGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLT 2941
            LLY SG+ +   GSF    GKKVS++DSE  M  +LPA+WKP+PLW+GKQVITA+LNH+T
Sbjct: 737  LLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHIT 795

Query: 2942 RGCEPFTLEKEIKIPDQYFQRE-------------HKNVQQIKHEMKNSENSLVIWKNEL 3082
            RG +PFT EK+ KIP +YF  E                 ++ + E K+ E  L+I KNEL
Sbjct: 796  RGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNEL 855

Query: 3083 VQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPD 3262
            V+GVIDKAQF ++GLVH +QELYGSN+AG+LLS  SRLFT+FLQ HGFTCGVDDL+I P+
Sbjct: 856  VRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPN 915

Query: 3263 KDMKRKEILD--QDVGKEVHSQFV-NRDPDIAPTELQAELEKVICRNRESATTSLDLRMR 3433
             D+ RK  LD  +++G+ VH +F+ +    I P +LQ E+EK+I  N E+A T LD  M+
Sbjct: 916  YDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMK 975

Query: 3434 RKFKDQQEKISKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRV 3613
             +  +   K++K+LLL  L+KPFPKNC+SLMT +GAKG TVNF QISSFLGQQDLEGKRV
Sbjct: 976  NELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRV 1035

Query: 3614 PRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSG 3793
            PRMVSGKTLPCFPPWD  +RAGG+++DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSG
Sbjct: 1036 PRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSG 1095

Query: 3794 YLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLR 3973
            YLQRCL+KNLE LKVCYDY+VRD+DGSIVQF YG+DG DVH+TSF+  F AL  N+E + 
Sbjct: 1096 YLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVC 1155

Query: 3974 QKFQYDHGFNAYIDKLPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYL 4153
            +KF  D  FN YI KLP+ L K  + F++     E ++F  + K     DF+ LV QKY+
Sbjct: 1156 EKFGQDGKFNGYIQKLPKELRKKTKKFIEGFME-ERQDFDNMKK---QKDFVNLVKQKYI 1211

Query: 4154 SSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKT 4333
            SSLA PGEPVGV+AAQS+GEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA+  IKT
Sbjct: 1212 SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKT 1271

Query: 4334 PVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK-- 4507
            P++TCP    +SKDDA  L  K+KK+TVADI ESMEV ++P +VQ++    IYKL +K  
Sbjct: 1272 PIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLY 1331

Query: 4508 ----FKSHDFISLEDLEETLTHAFLRELEDAIQKHVDLLYGIGGIMNSTPGGCS-DEVET 4672
                +  H  ISLED EETL   F+RELEDAIQ H+ LL  I GI N  P   S    ET
Sbjct: 1332 EPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKET 1391

Query: 4673 YEDGS 4687
             ED S
Sbjct: 1392 DEDAS 1396


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1612 bits (4174), Expect = 0.0
 Identities = 830/1375 (60%), Positives = 1007/1375 (73%), Gaps = 25/1375 (1%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDD 817
            MA   EG +E VE V FSF TDEEVR++S  KIT+P++LDSV RP PGGLYDPA+G +D+
Sbjct: 1    MAHVIEGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDE 60

Query: 818  QSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHC 997
             + C+SCGQR+F+CPGHCGHIDLVS  YNPL+FN+LH LL+ TCFFC HF++S   V   
Sbjct: 61   NTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKY 120

Query: 998  VSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASE 1177
            VSQLELI+KGDV+GA+ LD+                                      S 
Sbjct: 121  VSQLELISKGDVVGAKNLDSI-------------------------------------SP 143

Query: 1178 DDFTEHEDSERSHLSSSITVYDGAEDYSENN--QRRWDSFQFTEAMRVLNKFLKSKPRKC 1351
             + +  EDS+ SH+S S TV   A D    +  Q+ W S Q  EAM V++ FLK K R C
Sbjct: 144  SESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDC 203

Query: 1352 SNCEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTET 1531
             NC+AK+P++ KPTFGWF M  +S +  RAN+IRG K+E   + +        D + T +
Sbjct: 204  KNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLNGV--------DTDETHS 255

Query: 1532 DXXXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSF 1711
                            +    ++  EF KQ +FF G LLPSEVR+++  LW NEA LCSF
Sbjct: 256  SIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSF 315

Query: 1712 ICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXX 1891
            I DI +E+L  S    G S+FFL +ILVPP KFRP +KG  SVMEH QT+LLGKVLQ+  
Sbjct: 316  ISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANI 375

Query: 1892 XXXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQ 2071
                      ER +I++RW+DLQQSINVL+D KT   QG+++  SGICQLLEKKEG+FRQ
Sbjct: 376  ALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQ 435

Query: 2072 KMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEV 2251
            KMMGKRVNFACR+VISPDPY+AVNEIGIPPYFALRLTYPE+VTPWNV KLRDAI+NGPE+
Sbjct: 436  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEI 495

Query: 2252 HPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDG 2431
            HPGA  Y DK+STV+L  ++K+RI+ISRKLPSSRGVV + G++S+ EFEGKIVYRHLQDG
Sbjct: 496  HPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDG 555

Query: 2432 DIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISR 2611
            DIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS+YNADFDGDEMNVH PQDEISR
Sbjct: 556  DIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISR 615

Query: 2612 AEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAM 2791
            AEAYNIVNAN QYI+P++GD +RGLIQDHIVSAVLLT KDTFLT +++NQLLY SG+ + 
Sbjct: 616  AEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SS 674

Query: 2792 APGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEK 2971
              GSF    GKKVS++DSE  M  +LPA+WKP+PLW+GKQVITA+LNH+TRG +PFT EK
Sbjct: 675  GSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEK 734

Query: 2972 EIKIPDQYFQRE-------------HKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQF 3112
            + KIP +YF  E                 ++ + E K+ E  L+I KNELV+GVIDKAQF
Sbjct: 735  DGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQF 794

Query: 3113 GQFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD 3292
             ++GLVH +QELYGSN+AG+LLS  SRLFT+FLQ HGFTCGVDDL+I P+ D+ RK  LD
Sbjct: 795  DKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELD 854

Query: 3293 --QDVGKEVHSQFV-NRDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEKI 3463
              +++G+ VH +F+ +    I P +LQ E+EK+I  N E+A T LD  M+ +  +   K+
Sbjct: 855  KSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKV 914

Query: 3464 SKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLP 3643
            +K+LLL  L+KPFPKNC+SLMT +GAKG TVNF QISSFLGQQDLEGKRVPRMVSGKTLP
Sbjct: 915  NKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLP 974

Query: 3644 CFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNL 3823
            CFPPWD  +RAGG+++DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNL
Sbjct: 975  CFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1034

Query: 3824 ESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFN 4003
            E LKVCYDY+VRD+DGSIVQF YG+DG DVH+TSF+  F AL  N+E + +KF  D  FN
Sbjct: 1035 ECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFN 1094

Query: 4004 AYIDKLPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPV 4183
             YI KLP+ L K  + F++     E ++F  + K     DF+ LV QKY+SSLA PGEPV
Sbjct: 1095 GYIQKLPKELRKKTKKFIEGFME-ERQDFDNMKK---QKDFVNLVKQKYISSLAQPGEPV 1150

Query: 4184 GVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCL 4363
            GV+AAQS+GEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA+  IKTP++TCP    
Sbjct: 1151 GVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMG 1210

Query: 4364 KSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDF 4525
            +SKDDA  L  K+KK+TVADI ESMEV ++P +VQ++    IYKL +K      +  H  
Sbjct: 1211 RSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTG 1270

Query: 4526 ISLEDLEETLTHAFLRELEDAIQKHVDLLYGIGGIMNSTPGGCS-DEVETYEDGS 4687
            ISLED EETL   F+RELEDAIQ H+ LL  I GI N  P   S    ET ED S
Sbjct: 1271 ISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDAS 1325


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 1541 bits (3989), Expect = 0.0
 Identities = 798/1323 (60%), Positives = 967/1323 (73%), Gaps = 8/1323 (0%)
 Frame = +2

Query: 668  AVEKVSFSFMTDEEVRRHSVVKITNPVLLDS-VDRPTPGGLYDPAMGPLDDQSSCKSCGQ 844
            AVE V F FM+DEEVR+HSVV ITN  L+D   D+P PGGLYDPA+GPL D S C SCGQ
Sbjct: 3    AVEAVRFGFMSDEEVRKHSVVGITNLKLVDDDTDKPFPGGLYDPALGPLGDSSKCLSCGQ 62

Query: 845  RAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLELIAK 1024
            R++HCPGH GHIDLV P YNPL F  L  +L   CF C HF+  + EV  CVSQL LI K
Sbjct: 63   RSYHCPGHFGHIDLVFPVYNPLSFKFLRNILNTACFSCRHFKVGRLEVETCVSQLHLIRK 122

Query: 1025 GDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASEDDFTEHEDS 1204
            GD+ GAR+L +    S                                          D+
Sbjct: 123  GDIAGARRLRSLGGLS------------------------------------------DN 140

Query: 1205 ERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNPKIK 1384
            + SH + S+ + +       N  R WDS Q TEAM VLN+F + K +KC NCE+++PKI 
Sbjct: 141  QGSHSTGSVVLSESESGQDLNWCRSWDSIQLTEAMGVLNEFFRKKEKKCKNCESRSPKIT 200

Query: 1385 KPTFGWFL-METVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTETDXXXXXXXXX 1561
             P FGWF  +  +  S+ +   IR  K +        NS     + + ++          
Sbjct: 201  NPIFGWFYAVYAIHRSSSKGTHIREGKDKPSPE----NSEASSSIISADSPGNSGKKGSS 256

Query: 1562 XXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQLS 1741
                    + Q               HLLPSEVRE+V  LW NE SLCSFICDIQ++Q  
Sbjct: 257  SNKLNLGLVGQR--------------HLLPSEVREMVMQLWENEESLCSFICDIQQQQGK 302

Query: 1742 MSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXX 1921
            +S      SIFF  +ILV P KFR   +GG+SVMEH  T+LLGKVL+S            
Sbjct: 303  LSGNRMDYSIFFFETILVNPIKFRAPTRGGNSVMEHPHTVLLGKVLESNIALRNA----- 357

Query: 1922 ERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFA 2101
            +  + ++ W++LQQSINVL+D K+  S  KK G SGICQLLEKKEG+FRQKMMGKRVNFA
Sbjct: 358  QPSKFISHWMELQQSINVLFDGKS--STSKKAGVSGICQLLEKKEGVFRQKMMGKRVNFA 415

Query: 2102 CRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADK 2281
            CR+VISPDPY+AVNEIGIPPYFALRLTYPERVTPWN  KLR+A+VNGP++HPGA +Y D 
Sbjct: 416  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNATKLRNAVVNGPDIHPGATTYIDS 475

Query: 2282 VSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPT 2461
            V+T++LP ++K R+A+SRKLPSSRG   + G+ S+ +FEGK+VYRHLQDGDIVLVNRQPT
Sbjct: 476  VATMKLPLNKKARVALSRKLPSSRGATAEVGE-SQLDFEGKVVYRHLQDGDIVLVNRQPT 534

Query: 2462 LHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNAN 2641
            LHKPSIMAHVVRVLKGE+TLRMHYANCSSYNADFDGDE+NVH PQDEISRAEAYNIVNAN
Sbjct: 535  LHKPSIMAHVVRVLKGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNAN 594

Query: 2642 EQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQG 2821
            EQYI+PT+GDTVRGLIQDHIV+AVLLT+K TFLT  EFNQLLYGSG+FA+   S+ +N  
Sbjct: 595  EQYIVPTRGDTVRGLIQDHIVAAVLLTLKRTFLTCSEFNQLLYGSGVFALGRHSYVSNSS 654

Query: 2822 KKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEKEIKIPDQYFQ 3001
            +KVS    +G++  +LPA+WKP+PLWTGKQVI+ALLNH+TRG  P  ++ + K+P  YF 
Sbjct: 655  QKVSGHAPDGLINPILPAIWKPEPLWTGKQVISALLNHITRGFAPCIVKNQTKLPSTYFT 714

Query: 3002 REHKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLS 3181
                   + + E +N+EN+ ++WKNELV+GVIDKAQFG+FGLVHT+QELYGS SAG LL+
Sbjct: 715  --DNPAMEDEDEDQNAENNFLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSESAGNLLT 772

Query: 3182 AFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILDQ-DVGKEVHSQFVNRDP-DIAPT 3355
            AFSRLFT+FLQ HGFTCGVDDL+ILPD D+KRKE L+Q DVG+EVH  F+N  P  I   
Sbjct: 773  AFSRLFTMFLQIHGFTCGVDDLMILPDYDVKRKEKLEQEDVGEEVHCDFINFKPGQIGRE 832

Query: 3356 ELQAELEKVICRNRESATTSLDLRMRRKFK----DQQEKISKELLLTELLKPFPKNCISL 3523
            ELQ E+EK ICR+RESAT  LD++M+ K       +  ++ K LL   LLKPFP+NCIS+
Sbjct: 833  ELQLEIEKAICRDRESATALLDMKMKNKLTMKLTTEGSQVLKHLLTDGLLKPFPQNCISV 892

Query: 3524 MTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFL 3703
            MT +GAKG TVNFQQIS++LGQQ+LEGKRVPRMVSGKTLP FPPWDF SRAGG++TDRFL
Sbjct: 893  MTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFASRAGGFITDRFL 952

Query: 3704 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQ 3883
            SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKV YDY+VRDADGSI+Q
Sbjct: 953  SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVGYDYTVRDADGSIIQ 1012

Query: 3884 FKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDKLPEGLEKDAESFLKN 4063
            F YGEDG D H+TSFL+NF AL NNQET++QKFQ  H FN YI KLPEGLE++A  F++ 
Sbjct: 1013 FCYGEDGVDAHKTSFLKNFKALSNNQETIQQKFQNKHQFNFYIKKLPEGLEEEAMHFIQ- 1071

Query: 4064 LKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTF 4243
                +++  S + ++ +H  F+++V QK+LSSL P GEPVGVIAAQSIGEPSTQMTLNTF
Sbjct: 1072 ----KAQTLSSVKQVVDHHKFMRVVEQKFLSSLVPAGEPVGVIAAQSIGEPSTQMTLNTF 1127

Query: 4244 HLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVAD 4423
            HLAGRGEMNVTLGIPRLQEILMTASEVI+TP+LTCPFL  +SK +A S++  +KKIT+AD
Sbjct: 1128 HLAGRGEMNVTLGIPRLQEILMTASEVIRTPMLTCPFLQRQSKPNALSVISNLKKITIAD 1187

Query: 4424 IIESMEVHLLPPSVQENAVARIYKLLIKFKSHDFISLEDLEETLTHAFLRELEDAIQKHV 4603
            +IESM+V +         V RIYKL ++ K  +F+SLED  +TL  +FL+ELEDA++ HV
Sbjct: 1188 LIESMDVSI----SFHPKVGRIYKLRMRLKDTEFVSLEDTYKTLKTSFLKELEDALENHV 1243

Query: 4604 DLL 4612
              L
Sbjct: 1244 VFL 1246


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1509 bits (3908), Expect = 0.0
 Identities = 785/1385 (56%), Positives = 979/1385 (70%), Gaps = 32/1385 (2%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDD 817
            ++  ++G +E+++ +SFSF+TDEEVR+HS VKITNP LLD V+RP PGGLYDPA+GPL +
Sbjct: 4    ISSVSKGATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSE 63

Query: 818  QSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHC 997
            ++ CK+CGQR+ +CPGHCGHIDLVSP YNPL+FN LH LL+ TCF CFHFR  + +V  C
Sbjct: 64   RTICKTCGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKC 123

Query: 998  VSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASE 1177
            + QLELI KGD++GA++L++                                      S 
Sbjct: 124  IKQLELIVKGDIVGAKRLESV-------------------------------------SP 146

Query: 1178 DDFTEHEDSERSHLSSSITVYDGAE--DYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKC 1351
             +    E+S+ SH  S  T++ G +  D     Q+ W S QFTEAM VLN FLK K +KC
Sbjct: 147  SEALYPEESDLSH-ESCPTIHSGVQCNDGEHTRQQGWTSLQFTEAMSVLNNFLKPKFKKC 205

Query: 1352 SNCEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTET 1531
             NCE+ NP I KPTFGWF    +S +++RAN+I GH++     S +          TT+ 
Sbjct: 206  KNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQLGGLLGSEIEG--------TTDV 257

Query: 1532 DXXXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSF 1711
            +                   ++ + EF +Q + F   LLPSEV+E +  LW NEA +CSF
Sbjct: 258  EDAAEPGDQHSGTKKHKKKERKEVLEFTRQKSTFSKQLLPSEVKEKLELLWKNEARICSF 317

Query: 1712 ICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXX 1891
            I D+Q+++     +  G ++FFL +ILVPP KFRP  KGGDSVMEH QT+LL KVLQS  
Sbjct: 318  ISDLQQQEFG--KRKAGPAMFFLETILVPPIKFRPPTKGGDSVMEHPQTVLLSKVLQSNI 375

Query: 1892 XXXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQ 2071
                      E  +IV RWLDLQQSIN L+DSKT    G++EG+ GICQLLEKKEG+FRQ
Sbjct: 376  SLGDAHINK-EHSKIVRRWLDLQQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGLFRQ 434

Query: 2072 KMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEV 2251
            KMMGKRVN+ACR+VISPDPYI VNEIGIPP FA++LTYPERVTPWN+ KLR+A++NG E 
Sbjct: 435  KMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSEC 494

Query: 2252 HPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDG 2431
            HPGA  Y DK+S  +LP + K RI+ISRKLPSSRG VT++GK SE EFEGKIVYRHLQDG
Sbjct: 495  HPGATHYVDKLSINKLPPARKARISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDG 554

Query: 2432 DIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS-SYNADFDGDEMNVHLPQDEIS 2608
            D+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS +YNADFDGDEMNVH PQDE+S
Sbjct: 555  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVS 614

Query: 2609 RAEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFA 2788
            RAEAYNIVNAN Q++ P+ G+ +RGLIQDHIVSAVLLT KDTFL+ DEFNQLLY SG+  
Sbjct: 615  RAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVST 674

Query: 2789 MAPGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLE 2968
            + P SF    G+KV    SE  +  + PA+WKPKPLWTGKQVITA+LNH+T    PFT+E
Sbjct: 675  VGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVE 734

Query: 2969 KEIKIPDQYFQ---------REHKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQF 3121
            K+ KIP  +F+         +E K+ +    E +  E  ++++KNELV+GVIDK QFG++
Sbjct: 735  KDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEY 794

Query: 3122 GLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--Q 3295
            GLVHT+ EL GS++AG+LLS  SRLFT +LQ HGFTCGVDDL+IL +KD +RK+ L+  +
Sbjct: 795  GLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCE 854

Query: 3296 DVGKEVHSQFVNRDPD---IAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-I 3463
              G+ VH  F+    +   I P  +Q  +EK I  + +SA   LD +M  +   +    +
Sbjct: 855  KSGEAVHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGV 914

Query: 3464 SKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLP 3643
               LL   LLKP  KNCISLMT SGAKG  VNFQQISSFLGQQ+LEGKRVPRMVSGKTLP
Sbjct: 915  ISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLP 974

Query: 3644 CFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNL 3823
            CF PWD+ +R+GGY+TDRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNL
Sbjct: 975  CFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1034

Query: 3824 ESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHG-F 4000
            E LK+ YD++VRDADGS+VQF YGEDG DVH+TSF+  F  L  NQ+ + ++     G F
Sbjct: 1035 ECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAF 1094

Query: 4001 NAYIDKLPEGLEKDAESFLKNLKNPESKEFSKISKIANH----ADFLKLVNQKYLSSLAP 4168
            N+YI +LPE L++ A+ FL         +FS + +IA++     D   L+ QK+L SLA 
Sbjct: 1095 NSYISELPEALKEKADRFL--------DDFSIMGRIASNLVKREDLYNLMKQKFLLSLAQ 1146

Query: 4169 PGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTC 4348
            PGEPVGV+AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  IKTP++TC
Sbjct: 1147 PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTC 1206

Query: 4349 PFLCLKSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------F 4510
            P    ++ +DA+ L  K++K+TVADI+ESMEV ++P ++Q+  V RIYKL +K      +
Sbjct: 1207 PLQEGRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHY 1266

Query: 4511 KSHDFISLEDLEETLTHAFLRELEDAIQKHVDLLYGIGGIMNSTP---GGCSDEVETYED 4681
              +  IS+ED EETL   FLRELEDAIQ H+ LL  I GI +  P      S E +    
Sbjct: 1267 PQYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVA 1326

Query: 4682 GSVSH 4696
            G +SH
Sbjct: 1327 GDMSH 1331


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1501 bits (3887), Expect = 0.0
 Identities = 804/1377 (58%), Positives = 971/1377 (70%), Gaps = 41/1377 (2%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDD 817
            MAQ TEG +++VE V F+FMT EEVR+HS +K+TN  LLD +DRP PGGLYD  +GPL+D
Sbjct: 1    MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLED 60

Query: 818  QSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHC 997
            ++ CKSCG    HCPGHCGHIDLVSP YNPL+FN LHTLL+  CFFC+HFR+ + EV  C
Sbjct: 61   RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERC 120

Query: 998  VSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASE 1177
            VSQL+LI  GD++GA++LD                        SD+A        DA+S 
Sbjct: 121  VSQLKLIGNGDIVGAKRLD------------------------SDSA--------DASSY 148

Query: 1178 DDFTEHEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSN 1357
             D+ E      S + +S  V            + W S Q  EAM VLN FLK K  KC N
Sbjct: 149  SDYNEGSQESGSIVHNSEAV----------KPKEWTSLQLMEAMSVLNNFLKLKYNKCKN 198

Query: 1358 CEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVN--------SSWEDD 1513
            C+AKNP I KP FGW  M  + G+ +R N+IRG K+ D +S    +        SS  + 
Sbjct: 199  CDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNG 258

Query: 1514 LNTTETDXXXXXXXXXXXXXXKDPLAQESLP-EFEKQNNFFPGHLLPSEVREVVNHLWNN 1690
            ++  E D              K    +  +P EF KQ N F G LLPSEV+++   LW N
Sbjct: 259  VDIAEMDTSEIGFTGSEGNGAKARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWEN 318

Query: 1691 EASLCSFICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLG 1870
            E  LCS I DIQ++      K  G S+FFL +ILVPP KFR   KGGDSVMEH QT+LL 
Sbjct: 319  EVELCSIISDIQQQGFG---KKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLS 375

Query: 1871 KVLQSXXXXXXXXXXXXERLRIVNR-WLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLE 2047
            KVLQ+            +  + V R W+DLQQS+N+L+DSKT MSQG+ + SSGICQLLE
Sbjct: 376  KVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQGR-DVSSGICQLLE 434

Query: 2048 KKEGIFRQKMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRD 2227
            KKEG+FRQKMMGKRVNFACR+VISPDPY+AVNEIGIPPYFALRLTYPERVTPWNV KLR+
Sbjct: 435  KKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRE 494

Query: 2228 AIVNGPEVHPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKI 2407
            AI+NG E HPGA  Y DK+ST RLP S+K RI+ISRKLPSSRG + + GKN +YEFEGKI
Sbjct: 495  AIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKI 554

Query: 2408 VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVH 2587
            V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDE+NVH
Sbjct: 555  VLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVH 614

Query: 2588 LPQDEISRAEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLL 2767
             PQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIVSAVLLT +DTFL+ DEFNQLL
Sbjct: 615  FPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLL 674

Query: 2768 YGSGIFAMAPGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRG 2947
            Y SG+ ++A  SFS   G+KV +  SE  M  ++PA+ KPKPLWTGKQVI+++L+H+TRG
Sbjct: 675  YSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRG 734

Query: 2948 CEPFTLEKEIKIPDQYFQ-REHKNVQQIKHE-------------MKNS-----ENSLVIW 3070
              PFT+ K  KIP  +F+ R +KN Q  + E              KNS     E  ++I+
Sbjct: 735  RPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIY 794

Query: 3071 KNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLV 3250
            +N+LV+GVIDKAQF  +GLVHT+QELYGSN+AG+LLS FSRLFT+FLQ HGFTCGVDDL+
Sbjct: 795  RNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLL 854

Query: 3251 ILPDKDMKRKEILDQDVGKEVHSQF----VNRDPDIAPTELQAELEKVICRNRESATTSL 3418
            I+ DKD++RK+ L+    K   + +    V  + + APTELQ E+E+ I R+ E+A T+L
Sbjct: 855  IMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTAL 914

Query: 3419 DLRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQD 3595
            D +M     +   K +  ELL   L+K   +NCISLMT SGAKG  VNFQQISSFLGQQ+
Sbjct: 915  DRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQE 974

Query: 3596 LEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAV 3775
            LEGKRVPRMVSGKTLPCF PWD+ +RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAV
Sbjct: 975  LEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAV 1034

Query: 3776 KTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVN 3955
            KTSRSGYLQRCL+KNLE LK+ YD++VRDADGSIVQF YGEDG DVH+TSF+  F AL  
Sbjct: 1035 KTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALAL 1094

Query: 3956 NQETLRQKFQYDHGFNAYIDK-LPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLK 4132
            NQ+ + +K     G     DK LP+GL   AE F++     E K++    KI    DFL 
Sbjct: 1095 NQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE----EIKKYQH-QKI-KPKDFLN 1148

Query: 4133 LVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 4312
            L+  K+LSSLA PGEPVGV+AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT
Sbjct: 1149 LLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1208

Query: 4313 ASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIY 4492
            AS  I+TPV+TCP    K+K+DA  L  KMKKITVADI+ESMEV + P +V    +  IY
Sbjct: 1209 ASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIY 1268

Query: 4493 KLLI------KFKSHDFISLEDLEETLTHAFLRELEDAIQKHVDLLYGIGGIMNSTP 4645
            KL +      K+  +  I+++D E  L   FLRELEDAIQ H+ LL  I GI    P
Sbjct: 1269 KLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMP 1325


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1494 bits (3869), Expect = 0.0
 Identities = 803/1375 (58%), Positives = 969/1375 (70%), Gaps = 39/1375 (2%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDD 817
            MAQ TEG +++VE V F+FMT EEVR+HS +K+TN  LLD +DRP PGGLYD  +GPL+D
Sbjct: 1    MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLED 60

Query: 818  QSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHC 997
            ++ CKSCG    HCPGHCGHIDLVSP YNPL+FN LHTLL+  CFFC+HFR+ + EV  C
Sbjct: 61   RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERC 120

Query: 998  VSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASE 1177
            VSQL+LI  GD++GA++LD                        SD+A        DA+S 
Sbjct: 121  VSQLKLIGNGDIVGAKRLD------------------------SDSA--------DASSY 148

Query: 1178 DDFTEHEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSN 1357
             D+ E      S + +S  V            + W S Q  EAM VLN FLK K  KC N
Sbjct: 149  SDYNEGSQESGSIVHNSEAV----------KPKEWTSLQLMEAMSVLNNFLKLKYNKCKN 198

Query: 1358 CEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVN--------SSWEDD 1513
            C+AKNP I KP FGW  M  + G+ +R N+IRG K+ D +S    +        SS  + 
Sbjct: 199  CDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNG 258

Query: 1514 LNTTETDXXXXXXXXXXXXXXKDPLAQESLP-EFEKQNNFFPGHLLPSEVREVVNHLWNN 1690
            ++  E D              K    +  +P EF KQ N F G LLPSEV+++   LW N
Sbjct: 259  VDIAEMDTSEIGFTGSEGNGAKARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWEN 318

Query: 1691 EASLCSFICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLG 1870
            E  LCS I DIQ++      K  G S+FFL +ILVPP KFR   KGGDSVMEH QT+LL 
Sbjct: 319  EVELCSIISDIQQQGFG---KKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLS 375

Query: 1871 KVLQSXXXXXXXXXXXXERLRIVNR-WLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLE 2047
            KVLQ+            +  + V R W+DLQQS+N+L+DSKT MSQG+ + SSGICQLLE
Sbjct: 376  KVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQGR-DVSSGICQLLE 434

Query: 2048 KKEGIFRQKMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRD 2227
            KKEG+FRQKMMGKRVNFACR+VISPDPY+AVNEIGIPPYFALRLTYPERVTPWNV KLR+
Sbjct: 435  KKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRE 494

Query: 2228 AIVNGPEVHPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKI 2407
            AI+NG E HPGA  Y DK+ST RLP S+K RI+ISRKLPSSRG + + GKN +YEFEGKI
Sbjct: 495  AIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKI 554

Query: 2408 VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVH 2587
            V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDE+NVH
Sbjct: 555  VLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVH 614

Query: 2588 LPQDEISRAEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLL 2767
             PQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQDHIVSAVLLT +DTFL+ DEFNQLL
Sbjct: 615  FPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLL 674

Query: 2768 YGSGIFAMAPGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRG 2947
            Y SG+ ++A  SFS   G+KV +  SE  M  ++PA+ KPKPLWTGKQVI+++L+H+TRG
Sbjct: 675  YSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRG 734

Query: 2948 CEPFTLEKEIKIPDQYFQ-REHKNVQQIKHE-------------MKNS-----ENSLVIW 3070
              PFT+ K  KIP  +F+ R +KN Q  + E              KNS     E  ++I+
Sbjct: 735  RPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIY 794

Query: 3071 KNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLV 3250
            +N+LV+GVIDKAQF  +GLVHT+QELYGSN+AG+LLS FSRLFT+FLQ HGFTCGVDDL+
Sbjct: 795  RNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLL 854

Query: 3251 ILPDKDMKRKEILDQDVGK--EVHSQFVNRDPDIAPTELQAELEKVICRNRESATTSLDL 3424
            I+ DKD++RK+ L+    K  E H +      + + TELQ E+E+ I R+ E+A T+LD 
Sbjct: 855  IMEDKDIERKKQLEDCEKKVTEAHYELFGVKVN-SETELQLEIERTIRRDGETALTALDR 913

Query: 3425 RMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLE 3601
            +M     +   K +  ELL   L+K   +NCISLMT SGAKG  VNFQQISSFLGQQ+LE
Sbjct: 914  KMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELE 973

Query: 3602 GKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 3781
            GKRVPRMVSGKTLPCF PWD+ +RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKT
Sbjct: 974  GKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 1033

Query: 3782 SRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQ 3961
            SRSGYLQRCL+KNLE LK+ YD++VRDADGSIVQF YGEDG DVH+TSF+  F AL  NQ
Sbjct: 1034 SRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQ 1093

Query: 3962 ETLRQKFQYDHGFNAYIDK-LPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLV 4138
            + + +K     G     DK LP+GL   AE F++     E K++    KI    DFL L+
Sbjct: 1094 DMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIRE----EIKKYQH-QKI-KPKDFLNLL 1147

Query: 4139 NQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 4318
              K+LSSLA PGEPVGV+AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS
Sbjct: 1148 KLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 1207

Query: 4319 EVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKL 4498
              I+TPV+TCP    K+K+DA  L  KMKKITVADI+ESMEV + P +V    +  IYKL
Sbjct: 1208 IDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKL 1267

Query: 4499 LI------KFKSHDFISLEDLEETLTHAFLRELEDAIQKHVDLLYGIGGIMNSTP 4645
             +      K+  +  I+++D E  L   FLRELEDAIQ H+ LL  I GI    P
Sbjct: 1268 KMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMP 1322


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1476 bits (3822), Expect = 0.0
 Identities = 787/1363 (57%), Positives = 946/1363 (69%), Gaps = 27/1363 (1%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDD 817
            MAQTTEG SE+V+ V+FSFMT+EEVR+ SVVK+T P+LLD + RP  GGLYDPAMG LD+
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 818  QSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHC 997
             + CKSCGQR F+CPGHCGHIDLVSP YNPL+F +LH  L  TCF C HFR+ +  V +C
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120

Query: 998  VSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASE 1177
             + LELI  G++  A++L+     S+                                  
Sbjct: 121  KTLLELILDGEIAKAKELEEEWMNSKS--------------------------------- 147

Query: 1178 DDFTEHEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSN 1357
                      R+  S S+  Y+      E     W S QF+EA+ V+ KFLK K   C  
Sbjct: 148  ----------RTKSSHSMYTYERKNGQPET----WTSLQFSEAISVVTKFLKPKQSNCKY 193

Query: 1358 CEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTETDX 1537
            C AK+PKI KPTFGWF M+ ++G   RAN IR  K     S     SS E++  T  T  
Sbjct: 194  CGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVSSLEEETTTEATVE 253

Query: 1538 XXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFIC 1717
                              ++  PE   Q NF  GHLLPSEV++++  LW NEA LCSFI 
Sbjct: 254  DF----------------EDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFIS 297

Query: 1718 DIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXX 1897
            DI ++         G S+FFL S+LVPP KFRP AKGGDSVMEH QT+LL KVLQS    
Sbjct: 298  DISQQG---HGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISL 354

Query: 1898 XXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKM 2077
                    E  +IV  W+DLQQSIN+L+DSK+    GK + S GICQLLEKKEG+FRQKM
Sbjct: 355  GNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKM 414

Query: 2078 MGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHP 2257
            MGKRVNFACR+VISPDPY+AVNEIGIPPYFALRLTYPERVT WNV KLR+AI+NGPE HP
Sbjct: 415  MGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHP 474

Query: 2258 GAISYADKVSTVRL--PSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDG 2431
            GA  Y DK++TV+L    S K RI+ISRKLPSSRGVV   G + +YEFEGKIV RHLQDG
Sbjct: 475  GATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCD-DYEFEGKIVNRHLQDG 533

Query: 2432 DIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS-SYNADFDGDEMNVHLPQDEIS 2608
            DIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS +YNADFDGDEMNVH PQDEIS
Sbjct: 534  DIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEIS 593

Query: 2609 RAEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFA 2788
            RAEAYNIVNAN QY+ PT G+ +R LIQDHI+SAVLLT KDTFL  DEF+QLLY SGI  
Sbjct: 594  RAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGIST 653

Query: 2789 MAPGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLE 2968
                + S   G+K+  +D +  M  VLPAVWKP+PLWTGKQV+TALL+H+T+G  PF +E
Sbjct: 654  SKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVE 713

Query: 2969 KEIKIPDQYFQ-----------REHKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFG 3115
            K++KIP  +F+           +EH  V ++K   +  ++SL+I+KNELV+GVIDKAQFG
Sbjct: 714  KDVKIPRGFFKCRDMGNNSSKKKEHTKVDKLK-AARLDDDSLLIFKNELVRGVIDKAQFG 772

Query: 3116 QFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD- 3292
             +GLVHT+QELYGSN+AGLLLS  SRLFT+FLQ+HGFTCGVDDL+++   D +R++ L  
Sbjct: 773  DYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQI 832

Query: 3293 -QDVGKEVHSQF--VNRDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQ--QE 3457
             + +G++VH  F  V     + P  LQ  +EK I  N E+A TSLD +M  +  ++    
Sbjct: 833  CEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNS 892

Query: 3458 KISKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKT 3637
            K+ K+LL   LLKP  KNCISLMT SGAKGGT NFQQISS LGQQ LEGKRVPRMVSGKT
Sbjct: 893  KVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKT 952

Query: 3638 LPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVK 3817
            LPCFPPWD+ SRAGG++ DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K
Sbjct: 953  LPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1012

Query: 3818 NLESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHG 3997
            NLESLK+CYD++VRDADGS++QF+YGEDG DVH+T+F+  F AL  NQ+ L +   +  G
Sbjct: 1013 NLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLG 1072

Query: 3998 -FNAYIDKLPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPG 4174
             +N +I++LP  L +  E    +L         K+  +    DF++L+  KYLSSLA PG
Sbjct: 1073 KYNVFINELPSALREKGEFIYNSLSK------DKVPGLVLKEDFIRLLENKYLSSLAQPG 1126

Query: 4175 EPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPF 4354
            EPVGV+AAQSIGEPSTQMTLNTFH  GRGEMNVTLGI RLQEILMTAS+ IKTP++TCP 
Sbjct: 1127 EPVGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCPL 1186

Query: 4355 LCLKSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIKF------KS 4516
                S D A  L  K+KKITVADIIESM V ++P S ++  +  IYKL I F        
Sbjct: 1187 KEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQ 1246

Query: 4517 HDFISLEDLEETLTHAFLRELEDAIQKHVDLLYGIGGIMNSTP 4645
            H  IS EDLE TL   FL ELE  I++ + LL  I GI N  P
Sbjct: 1247 HGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1289


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1467 bits (3797), Expect = 0.0
 Identities = 781/1354 (57%), Positives = 940/1354 (69%), Gaps = 24/1354 (1%)
 Frame = +2

Query: 656  GVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKS 835
            G SE+V+ V+FSFMT+EEVR+ SVVK+T P+LLD + RP  GGLYDPAMG LD+ + CKS
Sbjct: 13   GASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 72

Query: 836  CGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLEL 1015
            CGQR F+CPGHCGHIDLVSP YNPL+F +LH  L  TCF C HFR+ +  V +C + LEL
Sbjct: 73   CGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLEL 132

Query: 1016 IAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASEDDFTEH 1195
            I  G++  A++L+     S+                                        
Sbjct: 133  ILDGEIAKAKELEEEWMNSKS--------------------------------------- 153

Query: 1196 EDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNP 1375
                R+  S S+  Y+      E     W S QF+EA+ V+ KFLK K   C  C AK+P
Sbjct: 154  ----RTKSSHSMYTYERKNGQPET----WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSP 205

Query: 1376 KIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTETDXXXXXXX 1555
            KI KPTFGWF M+ ++G   RAN IR  K     S     SS E++  T  T        
Sbjct: 206  KITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVSSLEEETTTEATVEDF---- 261

Query: 1556 XXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQ 1735
                        ++  PE   Q NF  GHLLPSEV++++  LW NEA LCSFI DI ++ 
Sbjct: 262  ------------EDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG 309

Query: 1736 LSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXX 1915
                    G S+FFL S+LVPP KFRP AKGGDSVMEH QT+LL KVLQS          
Sbjct: 310  ---HGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 366

Query: 1916 XXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVN 2095
              E  +IV  W+DLQQSIN+L+DSK+    GK + S GICQLLEKKEG+FRQKMMGKRVN
Sbjct: 367  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 426

Query: 2096 FACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYA 2275
            FACR+VISPDPY+AVNEIGIPPYFALRLTYPERVT WNV KLR+AI+NGPE HPGA  Y 
Sbjct: 427  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 486

Query: 2276 DKVSTVRL--PSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVN 2449
            DK++TV+L    S K RI+ISRKLPSSRGVV   G + +YEFEGKIV RHLQDGDIVLVN
Sbjct: 487  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCD-DYEFEGKIVNRHLQDGDIVLVN 545

Query: 2450 RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS-SYNADFDGDEMNVHLPQDEISRAEAYN 2626
            RQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS +YNADFDGDEMNVH PQDEISRAEAYN
Sbjct: 546  RQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYN 605

Query: 2627 IVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSF 2806
            IVNAN QY+ PT G+ +R LIQDHI+SAVLLT KDTFL  DEF+QLLY SGI      + 
Sbjct: 606  IVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACAS 665

Query: 2807 SNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEKEIKIP 2986
            S   G+K+  +D +  M  VLPAVWKP+PLWTGKQV+TALL+H+T+G  PF +EK++KIP
Sbjct: 666  SEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIP 725

Query: 2987 DQYF--------QREHKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQ 3142
              +         ++EH  V ++K   +  ++SL+I+KNELV+GVIDKAQFG +GLVHT+Q
Sbjct: 726  RGFLILDEGNSKKKEHTKVDKLK-AARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQ 784

Query: 3143 ELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVH 3316
            ELYGSN+AGLLLS  SRLFT+FLQ+HGFTCGVDDL+++   D +R++ L   + +G++VH
Sbjct: 785  ELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVH 844

Query: 3317 SQF--VNRDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQ--QEKISKELLLT 3484
              F  V     + P  LQ  +EK I  N E+A TSLD +M  +  ++    K+ K+LL  
Sbjct: 845  LGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSE 904

Query: 3485 ELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDF 3664
             LLKP  KNCISLMT SGAKGGT NFQQISS LGQQ LEGKRVPRMVSGKTLPCFPPWD+
Sbjct: 905  GLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDW 964

Query: 3665 TSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCY 3844
             SRAGG++ DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+CY
Sbjct: 965  ASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICY 1024

Query: 3845 DYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHG-FNAYIDKL 4021
            D++VRDADGS++QF+YGEDG DVH+T+F+  F AL  NQ+ L +   +  G +N +I++L
Sbjct: 1025 DHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINEL 1084

Query: 4022 PEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQ 4201
            P  L +  E    +L         K+  +    DF++L+  KYLSSLA PGEPVGV+AAQ
Sbjct: 1085 PSALREKGEFIYNSLSK------DKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQ 1138

Query: 4202 SIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDA 4381
            SIGEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS+ IKTP++TCP     S D A
Sbjct: 1139 SIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVA 1198

Query: 4382 NSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIKF------KSHDFISLEDL 4543
              L  K+KKITVADIIESM V ++P S ++  +  IYKL I F        H  IS EDL
Sbjct: 1199 KGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDL 1258

Query: 4544 EETLTHAFLRELEDAIQKHVDLLYGIGGIMNSTP 4645
            E TL   FL ELE  I++ + LL  I GI    P
Sbjct: 1259 ENTLETVFLEELEGLIEREMVLLSKINGIKXFVP 1292


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1443 bits (3736), Expect = 0.0
 Identities = 773/1349 (57%), Positives = 939/1349 (69%), Gaps = 18/1349 (1%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDD 817
            M  TTEG + +VE V+FSF+TD+E+RR S VKIT+P+L+D +  P P GLYD A+GP DD
Sbjct: 1    MVLTTEGATNSVEAVAFSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDD 60

Query: 818  QSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHC 997
            +S CKSCGQ + HCPGH GHI+LVSP YNPLMFN+L  +L+ TCF C HFR+  +EV   
Sbjct: 61   KSLCKSCGQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIR 120

Query: 998  VSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASE 1177
             SQLELI KGD+I A++L+                            S+   K  D+ + 
Sbjct: 121  TSQLELIMKGDIIRAKRLE----------------------------SIIPGKSVDSFNP 152

Query: 1178 DDFTEHEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSN 1357
            D+     D + S   S       AE   EN    W S QF+EAM VL K L  K +KC  
Sbjct: 153  DESIHPGDGDESQCYS-------AEQLGEN----WTSLQFSEAMSVLRKLLTKKHKKCQK 201

Query: 1358 CEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTETDX 1537
            C AKNPKI KPTFGWF M  +S    RA+ IR           V + +  DD++    D 
Sbjct: 202  CGAKNPKISKPTFGWFHMNVLSADETRADTIRS----------VESETTNDDISLGGGDT 251

Query: 1538 XXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFIC 1717
                         +D   +E L     + N   G LLPS+V+ ++  LW NEA LCS+I 
Sbjct: 252  TDVEDITSAGTAKRDKRKKEKLSYKLAEQNKLSGSLLPSQVKGILELLWENEARLCSYIN 311

Query: 1718 DIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXX 1897
            DIQ +      K  G S+FFL +I VPP KFRP  KGGD+VMEH QT+LL KVLQ     
Sbjct: 312  DIQDQGFG---KKAGHSMFFLENIFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQCNISL 368

Query: 1898 XXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKM 2077
                    +  ++++RW+DLQQS+N+L+D+KT  + GK++ ++GICQLLEKKEGIFRQKM
Sbjct: 369  GDAHLNKSDPSKVLSRWMDLQQSVNMLFDNKT--ASGKRDVATGICQLLEKKEGIFRQKM 426

Query: 2078 MGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHP 2257
            MGKRVNFACR+VISPDPY+AVNEIGIPPYFALRL+YPERVTPWNV KLR+AI+NGPE HP
Sbjct: 427  MGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHP 486

Query: 2258 GAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDI 2437
            GA  YADKVS V+LP   K+    SRKLP+SRGV+   GK S++EFEGK+VYRHL+DGD+
Sbjct: 487  GATHYADKVSIVKLPPKGKLLSLTSRKLPTSRGVILHQGKISDHEFEGKVVYRHLKDGDV 546

Query: 2438 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAE 2617
            VLVNRQPTLHKPSIMAH+VRVLKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRAE
Sbjct: 547  VLVNRQPTLHKPSIMAHIVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAE 606

Query: 2618 AYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAP 2797
            AYNIVNAN QY+ PT GD +R LIQDHIVSA LLT KDTFL+ +EFNQLLY SG+     
Sbjct: 607  AYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGL 666

Query: 2798 GSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEKEI 2977
            GSF    G+KV + +SE  M    PA+WKP+PLWTGKQVI+ALL ++TRG  PFT EK  
Sbjct: 667  GSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNA 726

Query: 2978 KIPDQYFQREHKNVQQI-----KHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQ 3142
            KIP  +F+ + +  ++      K + K  E+ L+I+KN+LV+GV+DKAQFG +G++HT+Q
Sbjct: 727  KIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQ 786

Query: 3143 ELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVH 3316
            ELYGSN AG LLSA SRLFT FLQ HGFTCGVDDL++   KD++R   L   + +G  VH
Sbjct: 787  ELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVH 846

Query: 3317 SQF--VNRDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTE 3487
             +F  V    +I P  LQ  +EK I  N E+A T LD +M      +    I K+LL   
Sbjct: 847  REFIGVKNSDNIDPVTLQLNIEKKIRSNGEAALT-LDRKMTSNLNSRTSSGILKKLLSEG 905

Query: 3488 LLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFT 3667
            +LKP  KNCISLMT SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCFPPWD +
Sbjct: 906  ILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCS 965

Query: 3668 SRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYD 3847
             RAGG++ DRFL+ L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD
Sbjct: 966  PRAGGFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYD 1025

Query: 3848 YSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKF--QYDHGFNAYIDKL 4021
            ++VRDADGSI+QF YGEDG DVH+TSF+  F AL  N+E +   +  Q D   + YI+KL
Sbjct: 1026 HTVRDADGSIIQFHYGEDGVDVHQTSFITEFGALSTNKELVFSNYCRQLDRS-SPYINKL 1084

Query: 4022 PEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQ 4201
            PE LE  AE F K  +N  S E          ADFL+L+  KY+S LA PGEPVGV+A+Q
Sbjct: 1085 PEALEGKAEKFSKQ-RNLGSME---------QADFLRLMEHKYVSCLAQPGEPVGVLASQ 1134

Query: 4202 SIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDA 4381
            S+GEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEILM A+  IKTP +TCP    KS  DA
Sbjct: 1135 SVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKDA 1194

Query: 4382 NSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK-FKSHDF-----ISLEDL 4543
              L  K+KKITVADII+SM+V ++P +V    V  IYKL++K +KS  +     I+L+D 
Sbjct: 1195 ICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDW 1254

Query: 4544 EETLTHAFLRELEDAIQKHVDLLYGIGGI 4630
            EETL   F+RELEDAIQ H+ LL  I GI
Sbjct: 1255 EETLRVNFVRELEDAIQNHMTLLSKISGI 1283


>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
            gi|557103957|gb|ESQ44311.1| hypothetical protein
            EUTSA_v10005738mg [Eutrema salsugineum]
          Length = 1697

 Score = 1424 bits (3687), Expect = 0.0
 Identities = 763/1420 (53%), Positives = 961/1420 (67%), Gaps = 63/1420 (4%)
 Frame = +2

Query: 632  LKMAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPL 811
            +  AQT EG S+ VE V FSFMT+E+VR+HSV+K+TNPVLLD+V+RP PGGLYDP MGPL
Sbjct: 1    MAQAQTIEGASQVVESVRFSFMTEEDVRKHSVMKVTNPVLLDNVERPVPGGLYDPLMGPL 60

Query: 812  DDQSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVT 991
            DD++SCKSCGQ +  CPGHCGHI+LV P Y+PL+FN+L+  L+ TCFFC HF +++ +V 
Sbjct: 61   DDRTSCKSCGQLSLVCPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFFCHHFMANKNDVE 120

Query: 992  HCVSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAA 1171
             CVSQL+LI KG+++ A++LD+  ++S +E                              
Sbjct: 121  RCVSQLKLIMKGNLVAAKQLDSRATDSSEE------------------------------ 150

Query: 1172 SEDDFTEHEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKC 1351
             ED   E E  E S +                 ++RW S QF E   ++N FL+ K + C
Sbjct: 151  CEDSEMEKERCEDSDMG----------------KQRWTSLQFAEVTDLMNTFLRLKSKSC 194

Query: 1352 SNCEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTET 1531
             +C+AK PK++KP FGW  +  +S SA+ AN+IRG K++   SS+       ++ N ++ 
Sbjct: 195  GSCKAKPPKLEKPMFGWVRIVGMSASAIGANVIRGIKVKKSASSV-------ENPNDSDD 247

Query: 1532 DXXXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSF 1711
                           K   + E   EF K  N     L PSEV++++  LW NE   CSF
Sbjct: 248  SGIDALSEVEDGSEKKKRKSSEVAEEFAKHQNNTRRDLFPSEVKKILKGLWENEHEFCSF 307

Query: 1712 ICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXX 1891
            I D+ + +    S+    S+FFL +ILVPPTKFR   KGGDSVMEH QT+ L KVL+S  
Sbjct: 308  IGDLWQSE----SENVDYSMFFLENILVPPTKFRAPTKGGDSVMEHPQTVGLNKVLESNI 363

Query: 1892 XXXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQ 2071
                      ++ +I++RW++LQ+S+NVL+DSKT   + +KEG+ GICQ LEKKEG+FRQ
Sbjct: 364  SLGNACTNKLDQPKIISRWMNLQESVNVLFDSKTATVKSQKEGT-GICQTLEKKEGLFRQ 422

Query: 2072 KMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEV 2251
            KMMGKRVN ACR+VISPDP+IAVN+IGIPP FAL+LTYPERVTPWNV KLR+AI+NGP++
Sbjct: 423  KMMGKRVNHACRSVISPDPFIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDI 482

Query: 2252 HPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDG 2431
            HPGA  Y+DKVST++LP + K RIAI+RKL SSRGV T+ GK  +  FEGK+VYRH+QDG
Sbjct: 483  HPGATHYSDKVSTMKLPPTRKARIAIARKLFSSRGVTTELGKTCDVNFEGKVVYRHMQDG 542

Query: 2432 DIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISR 2611
            D+VLVNRQPTLHKPSIMAH+VRVLKGEKTLR+HYANCS+YNADFDGDEMNVH PQDEISR
Sbjct: 543  DVVLVNRQPTLHKPSIMAHMVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISR 602

Query: 2612 AEAYNIVNANEQYIIPTKGDTVRGLIQ--------------------------------D 2695
            AEAYNIVNAN QY  P+ GD +R LIQ                                D
Sbjct: 603  AEAYNIVNANNQYSRPSNGDPLRALIQVVHPSYFFKSLYSFHELGCLPVIFMDLACTQQD 662

Query: 2696 HIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNNQGKKVSLVDSEGVMPHVLPA 2875
            HIVS+VLLT +DTFL  DEFNQLL+ SG+  M   SFS   GKKV    S   +  V PA
Sbjct: 663  HIVSSVLLTKRDTFLDKDEFNQLLFSSGVTDMVLSSFSGRSGKKVIQSASNAELLTVTPA 722

Query: 2876 VWKPKPLWTGKQVITALLNHLTRGCEPFTLEKEIKIPDQYFQREHKNVQQIKHEMKN--- 3046
            + KP PLWTGKQVITA+LN +T+G  PF++EK  K+P  +F+   K V+    E      
Sbjct: 723  ILKPVPLWTGKQVITAVLNEITKGHPPFSVEKATKLPVDFFKCRSKEVKCKSGESNEKNH 782

Query: 3047 ---------------SENSLVIWKNELVQGVIDKAQFGQFGLVHTIQELYGSNSAGLLLS 3181
                           +E+ L++ KNE V+GVIDKAQF  +GLVHT+ ELYGSN+AG LLS
Sbjct: 783  LTTKQDFDESWKKDLNEDKLLVRKNEFVRGVIDKAQFADYGLVHTVHELYGSNAAGNLLS 842

Query: 3182 AFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILDQ--DVGKEVHSQF--VNRDPDIA 3349
             FSRLFT+FLQ  GFTCGVDDL+IL D D +R + L +   VG+ V  +   +  D  I 
Sbjct: 843  VFSRLFTVFLQLQGFTCGVDDLIILKDMDGERTKQLQECEQVGERVLRKTFGIAVDVQID 902

Query: 3350 PTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTELLKPFPKNCISLM 3526
            P ++++ +E+++  + ESA  SLD  +  +      K +  +LL   LLKP  KNCISLM
Sbjct: 903  PQDMKSRIERILYEDGESALASLDRSVVNELNQCSSKGVMNDLLSDGLLKPPGKNCISLM 962

Query: 3527 TVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLS 3706
            T+SGAKG  VNFQQISS LGQQDLEGKRVPRMVSGKTLPCF PWD++ RAGG+++DRFLS
Sbjct: 963  TISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLS 1022

Query: 3707 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYSVRDADGSIVQF 3886
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD +VRDADGSI+QF
Sbjct: 1023 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQF 1082

Query: 3887 KYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYD--HGFNAYIDKLPEGLEKDAESFLK 4060
            +YGEDG DVHR+SF+  F  L  NQ+ + Q+   D   G ++YI  LP  L+  AE F++
Sbjct: 1083 QYGEDGVDVHRSSFIGKFRELTVNQDMILQRCSEDMLSGSSSYITDLPITLKNGAEKFVE 1142

Query: 4061 NLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQSIGEPSTQMTLNT 4240
             +  P ++  +  SK+    D LKLV  K+ +SLA PGEPVGV+AAQS+GEPSTQMTLNT
Sbjct: 1143 AM--PMNERIA--SKLVRQEDLLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNT 1198

Query: 4241 FHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDANSLLGKMKKITVA 4420
            FHLAGRGEMNVTLGIPRLQEILMTA+  IKTP++TCP L  K+ DDA  +  K++KI VA
Sbjct: 1199 FHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTTDDAKKITDKLRKIAVA 1258

Query: 4421 DIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDLEETLTHAFLRELE 4582
            DII+SMEV ++P +V E  V  I+KL IK      +  H  I+ ED +ET+T  FLR+LE
Sbjct: 1259 DIIKSMEVSVIPYAVHEGEVCSIHKLKIKLYKPEHYPKHTDITDEDWKETMTVMFLRKLE 1318

Query: 4583 DAIQKHVDLLYGIGGIMNSTPGGCSDEVETYEDGSVSHSH 4702
            DAI+ HV +L  I GI +      +   ET  D SVS  H
Sbjct: 1319 DAIEIHVKMLVRIRGIKSEKDTRPTSGNETDNDDSVSGKH 1358


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 1421 bits (3679), Expect = 0.0
 Identities = 754/1362 (55%), Positives = 951/1362 (69%), Gaps = 27/1362 (1%)
 Frame = +2

Query: 632  LKMAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPL 811
            +  AQTTEG S+ VE V FSFMT+++VR+HS +K+T+P+LLD+V+RP PGGLYDP MGPL
Sbjct: 1    MAQAQTTEGASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVERPVPGGLYDPVMGPL 60

Query: 812  DDQSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVT 991
            +D+ +CKSCGQ    CPGHCGHI+LV P Y+PL+F++L+  L+ TCFFC HF +   +V 
Sbjct: 61   NDKEACKSCGQLRLGCPGHCGHIELVYPIYHPLLFSLLYNFLQRTCFFCHHFMAKPNDVK 120

Query: 992  HCVSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAA 1171
             CVSQL+LI KGD++ A++L+                                  K D+ 
Sbjct: 121  KCVSQLKLIMKGDIVSAKQLEV---------------------------------KSDST 147

Query: 1172 SEDDFTEHEDSERSHLSSSITVYDGAE-DYSENNQRRWDSFQFTEAMRVLNKFLKSKPRK 1348
            S    T  ED E S   S +T     E +  +   +RW S QF E   V+  F+K   ++
Sbjct: 148  S----TNSEDIEVS-CESGVTNDSSQECEDPDMEDQRWTSLQFAEVTAVMKNFMKLTSKE 202

Query: 1349 CSNCEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLV-VNSSWEDDLNTT 1525
            C+ C+AKNPK++KP FGW  M+ ++ SAV AN+IRG K++   SS+   + S  D L+  
Sbjct: 203  CNKCKAKNPKLEKPMFGWVRMKGMNASAVGANLIRGLKVKKSTSSVENPDDSGIDALSEA 262

Query: 1526 ETDXXXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLC 1705
            E                K   + E   EFEKQ +     LLPSEVR ++ +LW NE   C
Sbjct: 263  EDSDKE-----------KREKSTEIAKEFEKQKDT-KRDLLPSEVRAILKNLWENEHEYC 310

Query: 1706 SFICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQS 1885
            SFI D+ +      S+    S+FFL S+LVPP KFRP  KGGDSVMEH QT+ L KVL S
Sbjct: 311  SFIGDLWQS----GSEKIDYSMFFLESVLVPPIKFRPPTKGGDSVMEHPQTVGLNKVLLS 366

Query: 1886 XXXXXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIF 2065
                        ++ ++++RW++LQ+S+NVL+DSK    Q +K+GS GICQLLEKKEG+F
Sbjct: 367  NITLGNACTNKLDQSKVISRWMNLQESVNVLFDSKAASVQSQKDGS-GICQLLEKKEGLF 425

Query: 2066 RQKMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGP 2245
            RQKMMGKRVN ACR+VISPDPYIAVNEIGIPP FAL+L YPERVTPWNV KLR+AI+NGP
Sbjct: 426  RQKMMGKRVNHACRSVISPDPYIAVNEIGIPPCFALKLIYPERVTPWNVEKLREAIINGP 485

Query: 2246 EVHPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQ 2425
            +VHPGA  Y+DK+STV+LPSS K R AI+ KL SSRG  T+ GK  +  FEGK+VYR ++
Sbjct: 486  DVHPGATHYSDKLSTVKLPSSVKERTAIANKLLSSRGATTELGKTCDINFEGKVVYRQMR 545

Query: 2426 DGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEI 2605
            DGD+VLVNRQPTLHKPS+MAH+VRVLKGEKTLR+HYANCS+YNADFDGDEMNVH PQDEI
Sbjct: 546  DGDVVLVNRQPTLHKPSLMAHIVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEI 605

Query: 2606 SRAEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIF 2785
            SRAEAYNIVNAN QY  P+ GD +R LIQDHIVS+VLLT +DTFL  D FNQLL+ SG+ 
Sbjct: 606  SRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKRDTFLDKDLFNQLLFSSGVT 665

Query: 2786 AMAPGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTL 2965
             M   SFS   GKKV++  S+  +  V+PA+ KP PLWTGKQVIT +LN +T+G  PFT+
Sbjct: 666  DMVLSSFSGKSGKKVTISASDAELLTVMPAILKPVPLWTGKQVITTVLNLITKGHPPFTV 725

Query: 2966 EKEIKIPDQYFQREHKNVQQIKHEMKN------------SENSLVIWKNELVQGVIDKAQ 3109
            EK  K+P  +F+   + V+    ++              +E+ L+I KNE V GVIDKAQ
Sbjct: 726  EKATKLPVDFFKCRSREVKPNTGDLTKKKDIDESWKQDLNEDKLLIRKNEFVCGVIDKAQ 785

Query: 3110 FGQFGLVHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEIL 3289
            F  FG+VHT+ ELYGSN+AG LLS FSRLFT FLQ HGFTCGVDDL+IL D D +R + L
Sbjct: 786  FADFGMVHTVHELYGSNAAGNLLSVFSRLFTAFLQIHGFTCGVDDLIILKDMDEERTKQL 845

Query: 3290 D--QDVGKEVHSQFVNRDPD--IAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQE 3457
               + VG+ V  +    D D  I P ++++ +E+++  + ESA  SLD  +         
Sbjct: 846  QECEKVGERVLRKTFGIDVDRQIDPQDMRSRIERILYEDGESALASLDRSIVNDLNQCSS 905

Query: 3458 K-ISKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGK 3634
            K +  +LL   LLK   KNCISLMT+SGAKG  VNFQQISS LGQQDLEGKRVPRMVSGK
Sbjct: 906  KGVMNDLLSDGLLKTPGKNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGK 965

Query: 3635 TLPCFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLV 3814
            TLPCF PWD++ RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+
Sbjct: 966  TLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLM 1025

Query: 3815 KNLESLKVCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYD- 3991
            KNLESLKV YD +VRDADGSI+QF+YGEDG DVHR+SF+  F  L  NQ+ + Q+   D 
Sbjct: 1026 KNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIGKFKELTVNQDMVLQRCSEDM 1085

Query: 3992 -HGFNAYIDKLPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAP 4168
              G ++YI  LP  L+KDAE F++ +  P ++  +  SK     + LKLV  KY  SLA 
Sbjct: 1086 LSGSSSYISDLPISLKKDAEKFVEAM--PMNERIA--SKFVRQEELLKLVKSKYFESLAQ 1141

Query: 4169 PGEPVGVIAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTC 4348
            PGEPVGV+AAQS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+  IKTP++TC
Sbjct: 1142 PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTC 1201

Query: 4349 PFLCLKSKDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------F 4510
            P L  K+K+DAN +  K++KITVADII+ ME+ ++P ++ +N +  I+KL I       +
Sbjct: 1202 PLLKGKTKEDANDITDKLRKITVADIIKDMELSVVPYTIHKNDICSIHKLKINLYKPEHY 1261

Query: 4511 KSHDFISLEDLEETLTHAFLRELEDAIQKHVDLLYGIGGIMN 4636
              +  I+ ED EET+   FLR+LEDAI+ H+ +L+ + GI N
Sbjct: 1262 PKNTDITEEDWEETMKVVFLRKLEDAIEIHMKMLHRMRGIRN 1303


>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1415 bits (3664), Expect = 0.0
 Identities = 759/1353 (56%), Positives = 937/1353 (69%), Gaps = 22/1353 (1%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDD 817
            M   TEGV+ +V+ V FSF+T +E+ R S VKITNP+LL+ +  P  GGLYDPA+GPLDD
Sbjct: 1    MVLFTEGVTNSVKAVGFSFLTSDELLRSSRVKITNPILLNPLLNPVSGGLYDPALGPLDD 60

Query: 818  QSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHC 997
            +S CKSCGQ + HCPGH GHI+LVSP YNPLMFN+L ++L+ TCF C HF +S++EV   
Sbjct: 61   KSLCKSCGQGSKHCPGHFGHIELVSPVYNPLMFNILSSILQRTCFSCHHFHASRKEVEMR 120

Query: 998  VSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASE 1177
             SQ ELI KGD+I A+ LD+ +S+                         E    GD    
Sbjct: 121  TSQFELIMKGDIIRAKSLDSIISD-------------------------ESNHSGDG--- 152

Query: 1178 DDFTEHEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSN 1357
                  ++S+            G E   EN    W S QF+EAM VL KFL  K +KC N
Sbjct: 153  ------DESQ------------GVEQLGEN----WSSLQFSEAMSVLRKFLLRKYKKCQN 190

Query: 1358 CEAKNPKIKKPTFGWFLMETVSGSAVRANIIRG---HKIEDEYSSLVVNSSWEDDLNTTE 1528
            C   NP+I KPTFGWF M  +S    RAN +R      I D+ S     ++ E+D+ +T 
Sbjct: 191  CGVVNPRISKPTFGWFHMNVLSDDEARANTMRALESETINDDMSLGGGETTEEEDITSTG 250

Query: 1529 TDXXXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCS 1708
            T               +D   +  L       N   G LLPS+V+ ++  LW NEA LCS
Sbjct: 251  T-------------AKRDKRKKGKLSSKLAAQNKLSGSLLPSQVKGILELLWENEARLCS 297

Query: 1709 FICDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSX 1888
            +I DIQ +      K  G S+FFL +I VPP KFRP  KGGD VMEH QT+LL KVLQ  
Sbjct: 298  YISDIQDQGFG---KKAGHSMFFLENIFVPPIKFRPPTKGGDDVMEHPQTVLLTKVLQGN 354

Query: 1889 XXXXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFR 2068
                       +  ++++RW+DLQQS+N+L+D+KT    G+ E ++GICQLLEKKEGIFR
Sbjct: 355  ISLGDAHINKLDPSKVLSRWMDLQQSVNLLFDNKT---SGQGEVAAGICQLLEKKEGIFR 411

Query: 2069 QKMMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPE 2248
            QKMMGKRVNFACR+VISPDPY+AVNEIGIPPYFALRL+YPERVTPWNV  LR+AI+NGP+
Sbjct: 412  QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNVTMLRNAILNGPQ 471

Query: 2249 VHPGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQD 2428
             HPGA  Y D+ +TV+LP + K+   ISRKLPSSRGV+   GK S+ EFEGKIVYRHL+D
Sbjct: 472  SHPGATHYTDQQATVKLPPNGKLLSFISRKLPSSRGVILDHGKISDQEFEGKIVYRHLKD 531

Query: 2429 GDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEIS 2608
            GD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEIS
Sbjct: 532  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEIS 591

Query: 2609 RAEAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFA 2788
            RAEAYNIVNAN QY+ PT GD +R LIQDHIVSA LLT KDTF+T + F QLLY SG+  
Sbjct: 592  RAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFITYEVFIQLLYSSGVSM 651

Query: 2789 MAPGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLE 2968
               GSFS   G+KV + +SE  M    PA+WKP+PLWTGKQVI+ALL ++TR   PFT+E
Sbjct: 652  TGLGSFSGKHGQKVFMTNSEFEMFLFPPAIWKPEPLWTGKQVISALLYYITRDSPPFTVE 711

Query: 2969 KEIKIPDQYFQ---REHKNVQQIKHEMK---NSENSLVIWKNELVQGVIDKAQFGQFGLV 3130
            K  KIP  +F+   R+ K   + K   K   + E+ L+I+KN+LV+GV+DKAQFG +G++
Sbjct: 712  KNAKIPSNFFKTQVRDGKRHTRDKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYGII 771

Query: 3131 HTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVG 3304
            HT+QELYGS  AG LLSA SRLFT FLQ HGFTCGVDDL+I  +KD++R + L   +++G
Sbjct: 772  HTVQELYGSKVAGNLLSALSRLFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIG 831

Query: 3305 KEVHSQFVN--RDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKEL 3475
              VH +F+       I P  LQ  +EK I  N E+A T LD +M      +    I K+L
Sbjct: 832  DIVHREFIGVMNSDIIDPITLQLNIEKKIRSNGEAALTYLDRKMTSNLNSRTSSGILKDL 891

Query: 3476 LLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPP 3655
            L   +LKP  KNCISLMT SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCF P
Sbjct: 892  LSDGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAP 951

Query: 3656 WDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLK 3835
            WD + RAGG++ DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LK
Sbjct: 952  WDCSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLK 1011

Query: 3836 VCYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKF--QYDHGFNAY 4009
            VCYD++VRDADGSI+QF YGEDG DVH TSF+  F AL  N+E +      Q D   + Y
Sbjct: 1012 VCYDHTVRDADGSIIQFHYGEDGVDVHHTSFINKFEALSTNKELVYGNCCRQLDRS-SPY 1070

Query: 4010 IDKLPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGV 4189
            I+KLP+ L++ AE+F ++  + + +    + +    A+FLKL+  KY+S LA PGE VGV
Sbjct: 1071 INKLPDALKEKAENFFRD--SLKQRNLGSLKR----AEFLKLMEHKYVSCLAQPGESVGV 1124

Query: 4190 IAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKS 4369
            +A+QS+GEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEI+M A+  IKTP +TCP    KS
Sbjct: 1125 LASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRSNKS 1184

Query: 4370 KDDANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFIS 4531
             ++A  L  K+KKITVADII+SM+V ++P SV    V  IYKL++K      +  +  I+
Sbjct: 1185 MEEAICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYSDIT 1244

Query: 4532 LEDLEETLTHAFLRELEDAIQKHVDLLYGIGGI 4630
            LED E+TL  +F+RELEDAI+ H+ LL  I GI
Sbjct: 1245 LEDWEDTLRISFVRELEDAIENHMALLSKISGI 1277


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 1414 bits (3659), Expect = 0.0
 Identities = 746/1371 (54%), Positives = 951/1371 (69%), Gaps = 25/1371 (1%)
 Frame = +2

Query: 656  GVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKS 835
            G S+ VE V FSFMT+++VR+HS +K+T+P+LLD+V  P PGGLYDP +GP++D+ +C +
Sbjct: 22   GASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVGEPYPGGLYDPKLGPIEDKKACDT 81

Query: 836  CGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLEL 1015
            CGQ    CPGHCGHI+LV P Y+PL+FN+L+  L+ TCF C HF +   +V   VSQL+L
Sbjct: 82   CGQLNLACPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFICHHFMAKPYDVERAVSQLKL 141

Query: 1016 IAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASEDDFTEH 1195
            I KGD++ A++L++                       SD++        D + E   T  
Sbjct: 142  IIKGDIVSAKQLESNTPTK------------------SDSS--------DVSCESGVTTD 175

Query: 1196 EDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNP 1375
                           +G ED S+   +RW S QF E   V+  F++   + C+ C+A NP
Sbjct: 176  SS-------------EGCED-SDMEDQRWTSLQFAEVTAVMKNFMRLSSKSCNRCKAVNP 221

Query: 1376 KIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTETDXXXXXXX 1555
            +++KP FGW  M+ + GS + AN+IRG K++   SS+       DD + +  D       
Sbjct: 222  QLEKPMFGWVRMKAMKGSDIVANVIRGLKLKKSTSSV----ENPDDFDDSGIDALSEVED 277

Query: 1556 XXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQ 1735
                   K   + E + EFE+ NN     LLP+EVRE++  LW NE   CSFI D+ +  
Sbjct: 278  GDKETREK---STEVVKEFEEHNNSSKRDLLPTEVREILKDLWENEHDFCSFIGDLWQS- 333

Query: 1736 LSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXX 1915
                S+    S+FFL S+LVPP KFRP+ KGGDSVMEH QT+ L KVL S          
Sbjct: 334  ---GSEKIDYSMFFLESVLVPPIKFRPSTKGGDSVMEHPQTVGLNKVLGSNIQLGNACTN 390

Query: 1916 XXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVN 2095
              ++ +I++RW++LQ+S+NVL+DSKT   Q ++EGS GICQLLEKKEG+FRQKMMGKRVN
Sbjct: 391  KLDQSKIISRWMNLQESVNVLFDSKTATVQSQREGS-GICQLLEKKEGLFRQKMMGKRVN 449

Query: 2096 FACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYA 2275
             ACR+VISPDPYIAVN+IGIPP FAL+LTYPERVTPWNV KLR+AI+NGP++HPGA  Y+
Sbjct: 450  HACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYS 509

Query: 2276 DKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQ 2455
            DK+STV+LPS+EK R AI+RKL SSRG  T+ GK  +  FEGK V+RH++DGD+VLVNRQ
Sbjct: 510  DKLSTVKLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDVVLVNRQ 569

Query: 2456 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVN 2635
            PTLHKPS+MAH+VRVL+GEKTLR+HYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVN
Sbjct: 570  PTLHKPSLMAHIVRVLRGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVN 629

Query: 2636 ANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNN 2815
            AN QY  P+ GD +R LIQDHIVS+VLLT +DTFL  D FNQLL+ SG+  M   SFS  
Sbjct: 630  ANNQYARPSNGDPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSSFSGR 689

Query: 2816 QGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEKEIKIPDQY 2995
             GKKV +  S+  +  V PA+ KP PLWTGKQVITA+LN +T+G  PFT+EK  K+P  +
Sbjct: 690  SGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDF 749

Query: 2996 FQREHKNVQQIKHEMKN------------SENSLVIWKNELVQGVIDKAQFGQFGLVHTI 3139
            F+   + V+    ++              +E+ L+I KNE V GVIDKAQF  +GLVHT+
Sbjct: 750  FKCRSREVKPNSGDLTKKKKIDESWKQNLNEDKLLIRKNEFVCGVIDKAQFADYGLVHTV 809

Query: 3140 QELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEV 3313
             ELYGSN+AG LLS FSRLFT+FLQ HGFTCGVDDL+IL D D +R + L   ++VG+ V
Sbjct: 810  HELYGSNAAGNLLSVFSRLFTVFLQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERV 869

Query: 3314 HSQFVNRDPD--IAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLT 3484
              +    D D  I P ++++ +E+++  + ESA  SLD  +         K +  +LL  
Sbjct: 870  LRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSD 929

Query: 3485 ELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDF 3664
             LLK    NCISLMT+SGAKG  VNFQQISS LGQQDLEGKRVPRMVSGKTLPCF PWD+
Sbjct: 930  GLLKTPGMNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDW 989

Query: 3665 TSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCY 3844
            + RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+ Y
Sbjct: 990  SPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINY 1049

Query: 3845 DYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYD--HGFNAYIDK 4018
            D +VRDADGSI+QF+YGEDG DVHR+SF+  F  L  NQ+ + Q+   D   G N+YI  
Sbjct: 1050 DCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELAINQDMVLQRCSEDMLSGANSYISD 1109

Query: 4019 LPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAA 4198
            LP  L+  AE F++ +  P ++  +  SK     + LKLV  K+ +SLA PGEPVGV+AA
Sbjct: 1110 LPISLKNGAEKFVEAM--PMNERIA--SKFVRQEELLKLVKSKFFASLAQPGEPVGVLAA 1165

Query: 4199 QSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDD 4378
            QS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+  IKTP++TCP L  K+K+D
Sbjct: 1166 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKED 1225

Query: 4379 ANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLED 4540
            AN + GK++KITVADII+SM++ ++P +V +N V  I+KL I       +  H  I+ +D
Sbjct: 1226 ANDITGKLRKITVADIIKSMDLSVVPYTVYKNEVCSIHKLKINLYKPEHYPKHTDITEKD 1285

Query: 4541 LEETLTHAFLRELEDAIQKHVDLLYGIGGIMNSTPGGCSDEVETYEDGSVS 4693
             EET+T  FLR+LEDAI+ H+ +L+ I GI N    G     ET  D SVS
Sbjct: 1286 WEETMTVVFLRKLEDAIEIHMKMLHRIRGICNDK--GPEAGNETDNDDSVS 1334


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score = 1399 bits (3622), Expect = 0.0
 Identities = 749/1371 (54%), Positives = 941/1371 (68%), Gaps = 25/1371 (1%)
 Frame = +2

Query: 656  GVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCKS 835
            G S+ VE V FSFMT+++VR+HS +K+T+P+L D+V  P PGGLYD  +GP DD+ +C S
Sbjct: 22   GASQVVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNS 81

Query: 836  CGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLEL 1015
            CGQ    CPGHCGHI+LV P Y+PL+FN+L   L+  CFFC HF +  E+V   VSQL+L
Sbjct: 82   CGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKL 141

Query: 1016 IAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASEDDFTEH 1195
            I KGD++ A++L++      K    S  +V                      + D   E 
Sbjct: 142  IIKGDIVSAKQLESNTPTKSKSSDESCESV---------------------VTTDSSEEC 180

Query: 1196 EDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEAKNP 1375
            EDS+              ED      +RW S QF E   VL  F++   + CS C+  NP
Sbjct: 181  EDSD-------------VED------QRWTSLQFAEVTAVLKNFMRLSSKSCSRCKGINP 221

Query: 1376 KIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTETDXXXXXXX 1555
            K++KP FGW  M  +  S V AN+IRG K++   SS+     ++D    +  D       
Sbjct: 222  KLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKSTSSVENPDGFDD----SGIDALSEVED 277

Query: 1556 XXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFICDIQREQ 1735
                   K   + E   EFE+ N+     LLPSEVR ++ HLW NE   CSFI D+ +  
Sbjct: 278  GDKETREK---STEVAAEFEEHNS--KRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQS- 331

Query: 1736 LSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXX 1915
                S+    S+FFL S+LVPPTKFRP   GGDSVMEH QT+ L KV++S          
Sbjct: 332  ---GSEKIDYSMFFLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESNNILGNACTN 388

Query: 1916 XXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVN 2095
              ++ +++ RW +LQ+S+NVL+DSKT   Q +++ SSGICQLLEKKEG+FRQKMMGKRVN
Sbjct: 389  KLDQSKVIFRWRNLQESVNVLFDSKTATVQSQRD-SSGICQLLEKKEGLFRQKMMGKRVN 447

Query: 2096 FACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYA 2275
             ACR+VISPDPYIAVN+IGIPP FAL+LTYPERVTPWNV KLR+AI+NGP++HPGA  Y+
Sbjct: 448  HACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYS 507

Query: 2276 DKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQ 2455
            DK ST++LPS+EK R AI+RKL SSRG  T+ GK  +  FEGK V+RH++DGDIVLVNRQ
Sbjct: 508  DKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQ 567

Query: 2456 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVN 2635
            PTLHKPS+MAH VRVLKGEKTLR+HYANCS+YNADFDGDEMNVH PQDEISRAEAYNIVN
Sbjct: 568  PTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVN 627

Query: 2636 ANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSFSNN 2815
            AN QY  P+ G+ +R LIQDHIVS+VLLT +DTFL  D FNQLL+ SG+  M   +FS  
Sbjct: 628  ANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGR 687

Query: 2816 QGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEKEIKIPDQY 2995
             GKKV +  S+  +  V PA+ KP PLWTGKQVITA+LN +T+G  PFT+EK  K+P  +
Sbjct: 688  SGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDF 747

Query: 2996 FQREHKNV----------QQIKHEMKN--SENSLVIWKNELVQGVIDKAQFGQFGLVHTI 3139
            F+   + V          ++I    K   +E+ L I KNE V GVIDKAQF  +GLVHT+
Sbjct: 748  FKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTV 807

Query: 3140 QELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEV 3313
             ELYGSN+AG LLS FSRLFT+FLQ+HGFTCGVDDL+IL D D +R + L   ++VG+ V
Sbjct: 808  HELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERV 867

Query: 3314 HSQFVNRDPD--IAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLT 3484
              +    D D  I P ++++ +E+++  + ESA  SLD  +         K +  +LL  
Sbjct: 868  LRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSD 927

Query: 3485 ELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDF 3664
             LLK   +NCISLMT+SGAKG  VNFQQISS LGQQDLEGKRVPRMVSGKTLPCF PWD+
Sbjct: 928  GLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDW 987

Query: 3665 TSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCY 3844
            + RAGG+++DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV Y
Sbjct: 988  SPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNY 1047

Query: 3845 DYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYD--HGFNAYIDK 4018
            D +VRDADGSI+QF+YGEDG DVHR+SF+  F  L  NQ+ + QK   D   G ++YI  
Sbjct: 1048 DCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISD 1107

Query: 4019 LPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAA 4198
            LP  L+K AE F++ +  P ++  +  SK     + LKLV  K+ +SLA PGEPVGV+AA
Sbjct: 1108 LPISLKKGAEKFVEAM--PMNERIA--SKFVRQEELLKLVKSKFFASLAQPGEPVGVLAA 1163

Query: 4199 QSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDD 4378
            QS+GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA+  IKTP++TCP L  K+K+D
Sbjct: 1164 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKED 1223

Query: 4379 ANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLED 4540
            AN +  +++KITVADII+SME+ ++P +V EN V  I+KL I       +  H  I+ ED
Sbjct: 1224 ANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEED 1283

Query: 4541 LEETLTHAFLRELEDAIQKHVDLLYGIGGIMNSTPGGCSDEVETYEDGSVS 4693
             EET+   FLR+LEDAI+ H+ +L+ I GI N   G  +   ET  D SVS
Sbjct: 1284 WEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTGPIAGN-ETDNDDSVS 1333


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1398 bits (3618), Expect = 0.0
 Identities = 743/1352 (54%), Positives = 934/1352 (69%), Gaps = 19/1352 (1%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDD 817
            MA  TEG + +V+ V+FSF+TDEE+ + S VKITNP+LLD++  P  GGLYDPA+GP  +
Sbjct: 1    MALATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHSPVAGGLYDPALGPFHE 60

Query: 818  QSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHC 997
            +S C+SCGQ ++HCPGH GHI+LVSPAYNPLMF+ML  +L  TCF C HF++S++EV   
Sbjct: 61   KSPCQSCGQNSYHCPGHFGHIELVSPAYNPLMFSMLSNVLRRTCFSCHHFQASRKEVELR 120

Query: 998  VSQLELIAKGDVIGARKLDAA-LSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAAS 1174
             +QLELI KG++  A+ LD   L ES                                  
Sbjct: 121  ANQLELIMKGNIAKAKNLDEINLDESA--------------------------------- 147

Query: 1175 EDDFTEHEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCS 1354
              D  + +DS+ S           AE   EN    W S QF+EAM VL KFLK + RKC 
Sbjct: 148  --DLCDGDDSQCS----------SAEQLGEN----WTSLQFSEAMSVLRKFLKKEYRKCQ 191

Query: 1355 NCEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTETD 1534
            NC   NPKI  PTFGWF ++ +S +  RAN+I G+ +       + +    DD++    D
Sbjct: 192  NCGYINPKITIPTFGWFHVKALSAAQARANVISGNDVS------LASEIIHDDISLGNGD 245

Query: 1535 XXXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFI 1714
                           +  A+    E +  ++   G LLPS+V+ ++  LW N+A LC +I
Sbjct: 246  TTDVEDITSGDIANSN--AKRHNKEKQISSHTLAGSLLPSQVQRILELLWENDARLCLYI 303

Query: 1715 CDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXX 1894
             DIQ   +    K  G S+FFL +I VPP KFRP  KG D V EHAQT+LL +VL+S   
Sbjct: 304  SDIQGLGIG---KKAGHSMFFLENIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNIS 360

Query: 1895 XXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQK 2074
                     +   ++ RW+DLQ+S+N+L+D+KT   + +K+  +GICQLLEKKEGIFRQK
Sbjct: 361  LGQAHLNKSDASVVLRRWMDLQRSVNLLFDNKTASGESQKDLVTGICQLLEKKEGIFRQK 420

Query: 2075 MMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVH 2254
            MMGKRVN+ACR+VISPDPY+AVNEIGIPPYFALRLTYPERVTPWNV +LR+AI+NGPE H
Sbjct: 421  MMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETH 480

Query: 2255 PGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGD 2434
            PGA  YADK ST++LP   + R   SR+L SSRGV+  +GK  + EFEGK+VYRHL+DGD
Sbjct: 481  PGATLYADKTSTLKLPLDRRSRSLTSRRLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGD 540

Query: 2435 IVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRA 2614
            +VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRA
Sbjct: 541  VVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRA 600

Query: 2615 EAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMA 2794
            EAYNIVNAN QY+ PT GD +R LIQDHIVSA LLT KDTFL+ +EFNQLLY SG+    
Sbjct: 601  EAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTG 660

Query: 2795 PGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEKE 2974
             G F    G+K+ + +S+  M    PA++KP+PLWTGKQVI+ALL ++T+G  PFT+EK 
Sbjct: 661  MGPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKN 720

Query: 2975 IKIPDQYFQ---REHKNVQQIKHEMKN--SENSLVIWKNELVQGVIDKAQFGQFGLVHTI 3139
             KIP  +F+   RE K   +     K+   E+ L+I+KN+LV+GV+DKAQFG +G+VHT+
Sbjct: 721  AKIPSSFFKTRMREGKKRTKDTSIKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTV 780

Query: 3140 QELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEV 3313
            QE YGSN+AG LLSA SRLFT FLQ HGFTCGVDDL++   KD +R   L+  +++G  V
Sbjct: 781  QEFYGSNTAGFLLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIV 840

Query: 3314 HSQFVN--RDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLT 3484
            H +F+      +I P  +Q  +EK I  N E+A T LD +M      +    + KELL  
Sbjct: 841  HREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSE 900

Query: 3485 ELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDF 3664
             +LKP  KN ISLMT SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCF  WD 
Sbjct: 901  GILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDC 960

Query: 3665 TSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCY 3844
            + RAGG++ DRFL+ LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCY
Sbjct: 961  SPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCY 1020

Query: 3845 DYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKF--QYDHGFNAYIDK 4018
            D++VRDADGSI+QF YGEDG DVH+TSF+  F AL  N+E +      + D   + YI+K
Sbjct: 1021 DHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDES-SPYINK 1079

Query: 4019 LPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAA 4198
            LP+ L+  AE F++     +S    + S    H +FL+L+  KY+SSLA PGEPVGV+A+
Sbjct: 1080 LPDALKGKAEKFIR-----DSSSKQRNSGSMTHTNFLQLMEHKYVSSLAQPGEPVGVLAS 1134

Query: 4199 QSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDD 4378
            QS+GEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS  IKTP +TCP    KS +D
Sbjct: 1135 QSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMED 1194

Query: 4379 ANSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLED 4540
            A  L  KMKKITVADIIESM+V ++P +VQ+  +  IYKL++K      +  +  ++L+D
Sbjct: 1195 AIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKD 1254

Query: 4541 LEETLTHAFLRELEDAIQKHVDLLYGIGGIMN 4636
             EETL  +F+R LEDAI+ ++ LL  I GI N
Sbjct: 1255 WEETLRVSFVRGLEDAIENNIALLAKISGITN 1286


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1395 bits (3611), Expect = 0.0
 Identities = 745/1351 (55%), Positives = 934/1351 (69%), Gaps = 18/1351 (1%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDD 817
            MA  TEG + +V+ V+FSF+TDEE+ + S VKITNP+LLD++  P  GGLYDPA+GP  +
Sbjct: 1    MALATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHSPVAGGLYDPALGPFHE 60

Query: 818  QSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHC 997
            +S C+SCGQ ++HCPGH GHI+LVSP YNPLMF+ML  +L  TCF C HF++S+ EV   
Sbjct: 61   KSPCQSCGQNSYHCPGHFGHIELVSPVYNPLMFSMLSNVLRRTCFSCHHFQASRNEVELR 120

Query: 998  VSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASE 1177
             +QLELI KG++  A+ LDA                                      + 
Sbjct: 121  ANQLELIMKGNIAKAKNLDAI-------------------------------------NL 143

Query: 1178 DDFTEHEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCSN 1357
            D+  +  D   S  SS        E   EN    W S QF+EAM VL KFLK + RKC N
Sbjct: 144  DESADLSDGNDSQCSSD-------EQLGEN----WTSLQFSEAMSVLRKFLKKEFRKCQN 192

Query: 1358 CEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTETDX 1537
            C   NPKI KPTFGWF ++ +S +  RAN+I G  I+   +S +++    DD++    D 
Sbjct: 193  CGNINPKITKPTFGWFHVKALSAAQARANVISG--IDASLASEIIH----DDISLGNGDT 246

Query: 1538 XXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFIC 1717
                          +   Q  L     ++N   G LLPS+V+ ++  LW NEA LC +I 
Sbjct: 247  TDVEDITSGDTANSNAKRQNKLA----RHNKLSGSLLPSQVQGILELLWENEARLCLYIS 302

Query: 1718 DIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXX 1897
            DIQ +      K  G S+FFL +I VPP KFRP  KG D V EHAQT+LL +VL+S    
Sbjct: 303  DIQGQGFG---KKAGHSMFFLDNIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISL 359

Query: 1898 XXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKM 2077
                    +   ++ RW+DLQ+S+N+L+D+KT  + G+K+  +GICQLLEKKEGIFRQKM
Sbjct: 360  GQAHLNKSDASVVLRRWMDLQRSVNLLFDNKT--ASGQKDLVTGICQLLEKKEGIFRQKM 417

Query: 2078 MGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHP 2257
            MGKRVN+ACR+VISPDPY+AVNEIGIPPYFALRLTYPERVTPWNV +LR+AI+NGPE HP
Sbjct: 418  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETHP 477

Query: 2258 GAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDI 2437
            GA  YADK ST++LP   + R   SRKL SSRGV+  +GK  + EFEGK+VYRHL+DGD+
Sbjct: 478  GATLYADKTSTLKLPLDRRSRSLTSRKLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDV 537

Query: 2438 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRAE 2617
            VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRAE
Sbjct: 538  VLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAE 597

Query: 2618 AYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAP 2797
            AYNIVNAN QY+ PT GD +R LIQDHIVSA LLT KDTFL+ +EFNQLLY SG+     
Sbjct: 598  AYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGM 657

Query: 2798 GSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEKEI 2977
            G F    G+K+ + +S+  M    PA++KP+PLWTGKQVI+ALL ++T+G  PFT+EK  
Sbjct: 658  GPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNA 717

Query: 2978 KIPDQYFQ---REHKNVQQIKHEMKN--SENSLVIWKNELVQGVIDKAQFGQFGLVHTIQ 3142
            KIP  +F+   RE K   +     K+   E+ L+I++N+LV+GV+DKAQFG +G+VHT+Q
Sbjct: 718  KIPSSFFKTRMREGKKRTKDTSIKKDEPDEDKLLIYRNDLVRGVVDKAQFGDYGIVHTVQ 777

Query: 3143 ELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVH 3316
            E YGSN+AG+LLSA SRLFT FLQ HGFTCGVDDL++   KD +R   L+  +++G  VH
Sbjct: 778  EFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVH 837

Query: 3317 SQFVN--RDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEKISKELLLTE- 3487
             +F+      +I P  +Q  +EK I  N E+A T LD +M      +      ++LL+E 
Sbjct: 838  REFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSTGVLKVLLSEG 897

Query: 3488 LLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFT 3667
            +LKP  KN ISLMT SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCF  WD +
Sbjct: 898  ILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCS 957

Query: 3668 SRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYD 3847
             RAGG++ DRFL+ LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD
Sbjct: 958  PRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYD 1017

Query: 3848 YSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKF--QYDHGFNAYIDKL 4021
            ++VRDADGSI+QF YGEDG DVH+TSF+  F AL  N+E +      + D   + YI+KL
Sbjct: 1018 HTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDKS-SPYINKL 1076

Query: 4022 PEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQ 4201
            P+ L+  AE F+      +S    + S    H +FL L+  KY+SSLA PGEPVGV+A+Q
Sbjct: 1077 PDALKGKAEKFIL-----DSSSKQRNSGSMTHTNFLHLMEHKYVSSLAQPGEPVGVLASQ 1131

Query: 4202 SIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDA 4381
            S+GEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS  IKTP +TCP    KS +DA
Sbjct: 1132 SVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDA 1191

Query: 4382 NSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDL 4543
              L  KMKKITVADIIESM+V ++P +VQ+  +  IYKL++K      +  +  ++L+D 
Sbjct: 1192 IRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDW 1251

Query: 4544 EETLTHAFLRELEDAIQKHVDLLYGIGGIMN 4636
            EETL  +F+R LEDAI+ ++ LL  I GI N
Sbjct: 1252 EETLRVSFVRGLEDAIENNIALLAKISGITN 1282


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score = 1394 bits (3607), Expect = 0.0
 Identities = 749/1318 (56%), Positives = 910/1318 (69%), Gaps = 78/1318 (5%)
 Frame = +2

Query: 653  EGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPLDDQSSCK 832
            EG +E VE V FSF TDEEVR++S  KIT+P++LDSV RP PGGLYDPA+G +D+ +   
Sbjct: 99   EGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENT--- 155

Query: 833  SCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTHCVSQLE 1012
                     PG+ G I L+      L   + H           HF +   +V   VSQLE
Sbjct: 156  ---------PGN-GRILLIVKKREELQX-VNHAA-------SVHFIA---QVQKYVSQLE 194

Query: 1013 LIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAASEDDFTE 1192
            LI+KGDV+GA+ LD+                                      S  + + 
Sbjct: 195  LISKGDVVGAKNLDSI-------------------------------------SPSESSY 217

Query: 1193 HEDSERSHLSSSITVYDGAEDYSENN--QRRWDSFQFTEAMRVLNKFLKSKPRKCSNCEA 1366
             EDS+ SH+S S TV   A D    +  Q+ W S Q  EAM V++ FLK K R C NC+A
Sbjct: 218  PEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKA 277

Query: 1367 KNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSS------------WED 1510
            K+P++ KPTFGWF M  +S +  RAN+IRG K+E   S +    S            W D
Sbjct: 278  KSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLSRVAEEKSSSEVENVNDMFPWGD 337

Query: 1511 DLNTTETDXXXXXXXXXXXXXXK--DPLAQESLPEFEKQNNFFPGHLLPSEV-------- 1660
             ++T ET               K  +    ++  EF KQ +FF G LLPSEV        
Sbjct: 338  GVDTDETHSSIAPTDGIQDTVTKXLERKGAQAPIEFIKQKSFFSGPLLPSEVCFLXALEH 397

Query: 1661 --------------------REVVNHLWNNEASLCSFICDIQREQLSMSSKTEGDSIFFL 1780
                                R+++  LW NEA LCSFI DI +E+L  S    G S+FFL
Sbjct: 398  HHQLPWLMSVVVVNYVVTKVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFL 457

Query: 1781 RSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXXXXXXXXXXXERLRIVNRWLDLQ 1960
             +ILVPP KFRP +KG  SVMEH QT+LLGKVLQ+            ER +I++RW+DLQ
Sbjct: 458  ETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQ 517

Query: 1961 QSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQKMMGKRVNFACRTVISPDPYIAV 2140
            QSINVL+D KT   QG+++  SGICQLLEKKEG+FRQKMMGKRVNFACR+VISPDPY+AV
Sbjct: 518  QSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAV 577

Query: 2141 NEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVRLPSSEKIR 2320
            NEIGIPPYFALRLTYPE+VTPWNV KLRDAI+NGPE+HPGA  Y DK+STV+L  ++K+R
Sbjct: 578  NEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMR 637

Query: 2321 IAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 2500
            I+ISRKLPSSRGVV + G++S+ EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV
Sbjct: 638  ISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 697

Query: 2501 LKGEKTLRMHYANC------------------SSYNADFDGDEMNVHLPQDEISRAEAYN 2626
            LKGEKTLRMHYANC                  S+YNADFDGDEMNVH PQDEISRAEAYN
Sbjct: 698  LKGEKTLRMHYANCRVESEHISMLDLDDCSDSSTYNADFDGDEMNVHFPQDEISRAEAYN 757

Query: 2627 IVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMAPGSF 2806
            IVNAN QYI+P++GD +RGLIQDHIVSAVLLT KDTFLT +++NQLLY SG+ +   GSF
Sbjct: 758  IVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSF 816

Query: 2807 SNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEKEIKIP 2986
                GKKVS++DSE  M  +LPA+WKP+PLW+GKQVITA+LNH+TRG +PFT EK+ KIP
Sbjct: 817  IGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIP 876

Query: 2987 DQYFQRE-------------HKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGL 3127
             +YF  E                 ++ + E K+ E  L+I KNELV+GVIDKAQF ++GL
Sbjct: 877  REYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGL 936

Query: 3128 VHTIQELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDV 3301
            VH +QELYGSN+AG+LLS  SRLFT+FLQ HGFTCGVDDL+I P+ D+ RK  LD  +++
Sbjct: 937  VHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENI 996

Query: 3302 GKEVHSQFV-NRDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEKISKELL 3478
            G+ VH +F+ +    I P +LQ E+EK+I  N E+A T LD  M+ +  +   K++K+LL
Sbjct: 997  GELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLL 1056

Query: 3479 LTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPW 3658
            L  L+KPFPKNC+SLMT +GAKG TVNF QISSFLGQQDLEGKRVPRMVSGKTLPCFPPW
Sbjct: 1057 LKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPW 1116

Query: 3659 DFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKV 3838
            D  +RAGG+++DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKV
Sbjct: 1117 DCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKV 1176

Query: 3839 CYDYSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKFQYDHGFNAYIDK 4018
            CYDY+VRD+DGSIVQF YG+DG DVH+TSF+  F AL  NQE + +KF  D  FN YI K
Sbjct: 1177 CYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNQEVVCEKFGQDGKFNGYIQK 1236

Query: 4019 LPEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAA 4198
            LP+ L K  + F++     E ++F  + K     DF+ LV QKY+SSLA PGEPVGV+AA
Sbjct: 1237 LPKELRKKTKKFIEGFME-ERQDFDNMKK---QKDFVNLVKQKYISSLAQPGEPVGVLAA 1292

Query: 4199 QSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSK 4372
            QS+GEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA+  IKTP++TCP    +SK
Sbjct: 1293 QSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSK 1350


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1364 bits (3531), Expect = 0.0
 Identities = 733/1349 (54%), Positives = 921/1349 (68%), Gaps = 18/1349 (1%)
 Frame = +2

Query: 638  MAQTTEGVSEAVEKVSFSFMTDEEVRRHSVVKITNPVLLDSVDRPTPGGLYDPAMGPL-D 814
            MA   EG + A+E V+FSF+T+EE+ + S VK+T+  L +++  P  GGLYDPA GPL D
Sbjct: 1    MALANEGATNAIESVAFSFLTNEELLKSSRVKVTDTNLCNNIGHPVRGGLYDPAFGPLLD 60

Query: 815  DQSSCKSCGQRAFHCPGHCGHIDLVSPAYNPLMFNMLHTLLENTCFFCFHFRSSQEEVTH 994
            ++S+C+SCG    HC GH GHI+LVSP YNPLMF  L  +L  TCF C +FR+S++EV  
Sbjct: 61   NRSNCESCGMSKDHCSGHFGHIELVSPVYNPLMFLFLGKILNRTCFSCHYFRASRDEVKR 120

Query: 995  CVSQLELIAKGDVIGARKLDAALSESQKEKVLSAVAVKNKKRRASDAASVEGKKKGDAAS 1174
              SQLELI KG++  A+ L                              ++  +  D+  
Sbjct: 121  RASQLELILKGNISKAKSL----------------------------GEIKLNETIDSVD 152

Query: 1175 EDDFTEHEDSERSHLSSSITVYDGAEDYSENNQRRWDSFQFTEAMRVLNKFLKSKPRKCS 1354
            +DD    +DS+          + GAE   E+    W S QF+EAM V+ +FL    +KC 
Sbjct: 153  DDD----DDSQ----------WSGAEQLGES----WTSLQFSEAMSVIYEFLAKDYKKCL 194

Query: 1355 NCEAKNPKIKKPTFGWFLMETVSGSAVRANIIRGHKIEDEYSSLVVNSSWEDDLNTTETD 1534
            NC   +PKI KPTFG F ++ +S    RAN+I   K  D  +        E+D+ +    
Sbjct: 195  NCGCISPKITKPTFGRFNVKALSSVQARANVISSAKAADVQAD-------EEDITS---- 243

Query: 1535 XXXXXXXXXXXXXXKDPLAQESLPEFEKQNNFFPGHLLPSEVREVVNHLWNNEASLCSFI 1714
                           + +    L E     +   G LLPS+V+E++  LW NE+ LCS I
Sbjct: 244  ------GGAGNSNGNNQILSIKLVE----QSSLSGSLLPSQVQEMIKLLWKNESRLCSHI 293

Query: 1715 CDIQREQLSMSSKTEGDSIFFLRSILVPPTKFRPAAKGGDSVMEHAQTLLLGKVLQSXXX 1894
             DIQ +      K  G S+FFL +I VPP KFRP  K GD+V EH QT+LL KVL+S   
Sbjct: 294  SDIQDQGFG---KKAGHSMFFLENIFVPPIKFRPPLKAGDNVAEHPQTVLLSKVLESNIS 350

Query: 1895 XXXXXXXXXERLRIVNRWLDLQQSINVLYDSKTMMSQGKKEGSSGICQLLEKKEGIFRQK 2074
                     +   I+ RW DLQ S+N+L+D+KT +   K   +SGICQLL+KKEGIFRQK
Sbjct: 351  LADAHRTKSDAYYILRRWQDLQGSVNLLFDNKTSLRSQKD--ASGICQLLDKKEGIFRQK 408

Query: 2075 MMGKRVNFACRTVISPDPYIAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIVNGPEVH 2254
            MMGKRVN+ACR+VISPDPY+AVNEIGIPPYFALRLTYPERVTPWN  KL DAI+NGP+ H
Sbjct: 409  MMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTH 468

Query: 2255 PGAISYADKVSTVRLPSSEKIRIAISRKLPSSRGVVTKSGKNSEYEFEGKIVYRHLQDGD 2434
            PGAI Y DK ST+RL   + +R + SR+L SSRGV+   GK  E+EFEGK+VYRHL+DGD
Sbjct: 469  PGAILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGD 528

Query: 2435 IVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSSYNADFDGDEMNVHLPQDEISRA 2614
            +VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS+YNADFDGDE+NVH PQDEISRA
Sbjct: 529  VVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRA 588

Query: 2615 EAYNIVNANEQYIIPTKGDTVRGLIQDHIVSAVLLTMKDTFLTLDEFNQLLYGSGIFAMA 2794
            EAYNIVNAN QY+ PT GD +R LIQDHIVSA LLT KDTFL+  EFNQLLY SG+    
Sbjct: 589  EAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTG 648

Query: 2795 PGSFSNNQGKKVSLVDSEGVMPHVLPAVWKPKPLWTGKQVITALLNHLTRGCEPFTLEKE 2974
             GSFS   G+KV + +SE  M    PA++KP+PLWTGKQVI+ALL ++T+G  PFT+EK 
Sbjct: 649  MGSFSCKPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKN 708

Query: 2975 IKIPDQYFQRE----HKNVQQIKHEMKNSENSLVIWKNELVQGVIDKAQFGQFGLVHTIQ 3142
             KIP  +F+ +     K+ +    +    E+ L+I++N+LV+GV+DKAQFG +G+VHT+Q
Sbjct: 709  AKIPSSFFKTQTGEIKKHTKDTSRKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQ 768

Query: 3143 ELYGSNSAGLLLSAFSRLFTIFLQSHGFTCGVDDLVILPDKDMKRKEILD--QDVGKEVH 3316
            E YGSN+AG+LLSA SRLFT FLQ HGFTCGVDDL+I   KD +R   L+  +++G  VH
Sbjct: 769  EFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVH 828

Query: 3317 SQFVN--RDPDIAPTELQAELEKVICRNRESATTSLDLRMRRKFKDQQEK-ISKELLLTE 3487
             +F+      +I P  +Q  +EK I  N E+A T LD +M      +    + KELL   
Sbjct: 829  REFIGVMESENIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKG 888

Query: 3488 LLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFT 3667
             LKP  KN ISLMT SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCFP WD +
Sbjct: 889  SLKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCS 948

Query: 3668 SRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYD 3847
             RAGG++ DRFL+ LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYD
Sbjct: 949  PRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYD 1008

Query: 3848 YSVRDADGSIVQFKYGEDGADVHRTSFLRNFVALVNNQETLRQKF--QYDHGFNAYIDKL 4021
            ++VRD+DGSI+QF YGEDG DVH+TSF+  F AL  N+E +      Q D   + YI+KL
Sbjct: 1009 HTVRDSDGSIIQFHYGEDGVDVHQTSFINKFEALSINKELIYSNCCRQLDRS-SPYINKL 1067

Query: 4022 PEGLEKDAESFLKNLKNPESKEFSKISKIANHADFLKLVNQKYLSSLAPPGEPVGVIAAQ 4201
            P+ L+  AE+F+++  + +     + S     ADFL+++  KY+SSLA PGEPVGV+A+Q
Sbjct: 1068 PDALKGKAENFIRDFSSKQ-----RNSSSMKEADFLQVMEHKYVSSLAQPGEPVGVLASQ 1122

Query: 4202 SIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIKTPVLTCPFLCLKSKDDA 4381
            S+GEP+TQMTLNTFHLAGRGEMNVTLGIPRL EI++ AS+ IKTP +TCP    KS +DA
Sbjct: 1123 SVGEPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPNKSMEDA 1182

Query: 4382 NSLLGKMKKITVADIIESMEVHLLPPSVQENAVARIYKLLIK------FKSHDFISLEDL 4543
              L  KMKKITVADIIESM+V ++P +V+E  +  IYKL +K      +  +  ++LED 
Sbjct: 1183 IRLADKMKKITVADIIESMKVSVVPVAVKEGRICSIYKLTMKLHKPKHYPKYTDVTLEDW 1242

Query: 4544 EETLTHAFLRELEDAIQKHVDLLYGIGGI 4630
            EETL   F+RELEDAI+ H+ LL  I GI
Sbjct: 1243 EETLRVGFVRELEDAIENHISLLARISGI 1271