BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00000762
         (1963 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Popu...   632   e-178
ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mi...   632   e-178
ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus ...   631   e-178
ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mi...   627   e-177
ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mi...   626   e-176
gb|EOY18823.1| Pseudouridine synthase [Theobroma cacao]               625   e-176
ref|XP_004238400.1| PREDICTED: tRNA pseudouridine synthase A, mi...   623   e-175
ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citr...   622   e-175
ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mi...   616   e-173
gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucum...   614   e-173
ref|XP_006473737.1| PREDICTED: tRNA pseudouridine synthase A, mi...   613   e-173
gb|ESW26894.1| hypothetical protein PHAVU_003G157400g [Phaseolus...   613   e-172
ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mi...   613   e-172
ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudou...   611   e-172
gb|ESW26895.1| hypothetical protein PHAVU_003G157400g [Phaseolus...   603   e-170
ref|XP_004292926.1| PREDICTED: tRNA pseudouridine synthase A, mi...   595   e-167
emb|CBI18897.3| unnamed protein product [Vitis vinifera]              593   e-167
ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago trunca...   588   e-165
ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago trunca...   588   e-165
ref|XP_004507719.1| PREDICTED: tRNA pseudouridine synthase A, mi...   586   e-164

>ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Populus trichocarpa]
            gi|550339814|gb|EEE94755.2| hypothetical protein
            POPTR_0005s26830g [Populus trichocarpa]
          Length = 497

 Score =  632 bits (1631), Expect = e-178
 Identities = 328/497 (65%), Positives = 381/497 (76%)
 Frame = +3

Query: 204  PGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYC 383
            P  + +P  K+ KMS+T  TS+D++   T  G D   +              IAIF  YC
Sbjct: 12   PPRQQEPDLKRPKMSTT--TSEDEDAATTTPGDDTTIK------KQRYKRRKIAIFLTYC 63

Query: 384  GVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVV 563
            GVGYQGMQKNPGAKTIEG+LEEALFHAGAVP+HDRG P+RYDWARSARTDKGVSAVGQVV
Sbjct: 64   GVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEHDRGIPKRYDWARSARTDKGVSAVGQVV 123

Query: 564  SGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRH 743
            SGRFY+DPPGLVERL+S L  QIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FAL+P  H
Sbjct: 124  SGRFYIDPPGLVERLHSNLSPQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFALNPCSH 183

Query: 744  RDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEVNVAESGILSNTGGP 923
            RDRESV ASLGSG+ELVKCL+CSERGRKV+G +GKR F++++D    V+ + I SN    
Sbjct: 184  RDRESVLASLGSGSELVKCLQCSERGRKVVGAVGKRSFESKSD----VSPTEIWSNDKDT 239

Query: 924  KSNSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELK 1103
               SE++EE   ++    NS D N + E   +    +ENG     KS+ E ++       
Sbjct: 240  TLKSEIKEEVSISS----NSEDANANPEIKDEIMVSIENGDDKNTKSEEEAIKG------ 289

Query: 1104 VEKSDFCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDG 1283
               S FCYG+KE ERFNRIL  Y G+HNFHNFTTRTKAEDP+A+RYIISF+AKTTV V+G
Sbjct: 290  ---SGFCYGEKEKERFNRILNYYLGSHNFHNFTTRTKAEDPSAQRYIISFDAKTTVAVEG 346

Query: 1284 IEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYL 1463
            IEFVKCEV+GQSFMLHQIRKMIG+AVAIMRN A ESLI+TA +++VNINVP APEVGLYL
Sbjct: 347  IEFVKCEVVGQSFMLHQIRKMIGVAVAIMRNCASESLIQTALQKNVNINVPTAPEVGLYL 406

Query: 1464 DECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHR 1643
            DECFFTSYN+KW D H ELSMK Y EEAE+FKMK+IYSHIA+TEHKEG  ALWLHSLNHR
Sbjct: 407  DECFFTSYNQKWKDSHEELSMKDYEEEAEEFKMKHIYSHIATTEHKEGSVALWLHSLNHR 466

Query: 1644 NYPDLRAGGNNMETNTE 1694
            NYPDLRA  N     +E
Sbjct: 467  NYPDLRACDNGDNITSE 483


>ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
            vinifera]
          Length = 503

 Score =  632 bits (1631), Expect = e-178
 Identities = 325/494 (65%), Positives = 374/494 (75%), Gaps = 9/494 (1%)
 Frame = +3

Query: 219  QPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYCGVGYQ 398
            +P PK+ KMS T+ TSDD++ + T A                     IAIFFAYCGVGYQ
Sbjct: 5    EPDPKRPKMSQTTTTSDDEDCDTTTA-----------TKKPRYKRRKIAIFFAYCGVGYQ 53

Query: 399  GMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFY 578
            GMQKNPGAKTIEG+LEEALF +GAVP+ DRG P+R+DWARSARTDKGVSAVGQVVSGRFY
Sbjct: 54   GMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFY 113

Query: 579  VDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRES 758
            +DPPGLVERLNS LP QIRIFG+KRVT SFNAKKFCD+RRYVYLIP+FALDPS H DRES
Sbjct: 114  IDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRES 173

Query: 759  VFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEVNVAESGILSN-TGGPKSNS 935
            V AS+GS NELVKCLECSERGRKV+G MGKR F+++   +      G   N  G     S
Sbjct: 174  VLASVGSENELVKCLECSERGRKVVGIMGKRSFESKVSVDDREDVEGESKNIVGAAILKS 233

Query: 936  EMQEESQQAADSLENSNDMNVS-----CEKTKQTARELENGAIDIVKSDGEKVENQD--G 1094
            E +EES  ++D+  + N ++       C +  +T+    +         G     Q   G
Sbjct: 234  EAKEESMASSDNRHDGNSISQPIKEGRCFQDNETSESTPDSRASAQNEPGVSHSEQSDKG 293

Query: 1095 ELKVEK-SDFCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTV 1271
            E K+EK S FCYGDKE ERFNRIL  Y GTHNFHNFTTR KAEDP+A+R+I+SF+  T V
Sbjct: 294  ENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIV 353

Query: 1272 IVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEV 1451
             V+GIEFVKCEV+GQSFMLHQIRKMIGLAVAIMRN APESL+ETA  +DVNINVP APEV
Sbjct: 354  TVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEV 413

Query: 1452 GLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHS 1631
            GLYLDECFF+SYNKKW D H E+SMK+YAEEAE+FKMK++YSHIA+TEHKEGV ALWLHS
Sbjct: 414  GLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHS 473

Query: 1632 LNHRNYPDLRAGGN 1673
            LNHRNYPDL  G N
Sbjct: 474  LNHRNYPDLCIGDN 487


>ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223551320|gb|EEF52806.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 584

 Score =  631 bits (1628), Expect = e-178
 Identities = 348/565 (61%), Positives = 401/565 (70%), Gaps = 48/565 (8%)
 Frame = +3

Query: 204  PGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYC 383
            P  + +P  K+ +MS+T  TSD++E   TA G + A                +AIFFAYC
Sbjct: 11   PPPQEEPERKRPRMSTT--TSDEEEIATTAPGDEAAT-----VKKQRYKRRKMAIFFAYC 63

Query: 384  GVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVV 563
            GVGYQGMQKNPGAKTIEG+LEEALFH+GAVP+ DRGCP+RYDWARSARTDKGVSAVGQV+
Sbjct: 64   GVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYDWARSARTDKGVSAVGQVI 123

Query: 564  SGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRH 743
            SGRFYVDPPGLV+RLNSILPSQIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FALDPS H
Sbjct: 124  SGRFYVDPPGLVDRLNSILPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSSH 183

Query: 744  RDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDP---------------- 875
            RDRESV ASLGSG+ELVKCLECSERGRKVIG +GKR F+++++                 
Sbjct: 184  RDRESVLASLGSGDELVKCLECSERGRKVIGAVGKRSFESKSEAFQTDILLNGGCAIANC 243

Query: 876  EVNVAESGILSNTGGPKSNSEMQEESQQA-------------ADSLENSNDMNVSCEKTK 1016
            E+    S  + N  G + +SE  E++  +              D L NS D NV  +  +
Sbjct: 244  EIKEDISMSMDNAHGVRMHSEFVEQTNVSHNEDSETESAMPRTDILSNSEDGNVKSDSKQ 303

Query: 1017 QTA-----------RELENGAIDIVKSDGEKVENQDGELKVEK-SDFCYGDKEGERFNRI 1160
            +             +E E    D   S GE  E  +GE  V K S+FCYG++E E+FNRI
Sbjct: 304  EEVMVSEDAADGGNKESETMEKDSKASVGE--ERVNGEEHVMKGSEFCYGEEEKEKFNRI 361

Query: 1161 LKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIR 1340
            LK Y G+HNFHNFTTRTKAEDP+A+RYIISF+A+TTV V+GIEFVKCEV+GQSFMLHQIR
Sbjct: 362  LKYYVGSHNFHNFTTRTKAEDPSAQRYIISFDARTTVTVEGIEFVKCEVIGQSFMLHQIR 421

Query: 1341 KMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGEL 1520
            KMIGLAVAIMRN APESLI TA ++DV INVP APEVGLYLDECFFTSYN+KW D H EL
Sbjct: 422  KMIGLAVAIMRNCAPESLISTALQKDVKINVPTAPEVGLYLDECFFTSYNQKWKD-HEEL 480

Query: 1521 SMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLR---AGGNNMETNT 1691
             MK Y E AEDFKMKYIYSHIASTE KEGV  LWLHSLN+RNYPDLR       N E +T
Sbjct: 481  CMKDYEEVAEDFKMKYIYSHIASTEQKEGVVGLWLHSLNYRNYPDLRFCYTLDANNEKST 540

Query: 1692 ESLKADAAVGVLS----NSSKADAE 1754
            E +    A    S    NS  AD E
Sbjct: 541  EVVNNGDANSEESAQEKNSEDADVE 565


>ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 548

 Score =  627 bits (1616), Expect = e-177
 Identities = 346/560 (61%), Positives = 401/560 (71%), Gaps = 13/560 (2%)
 Frame = +3

Query: 153  SPLTMEAESLSPSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXX 332
            S  T+ + SL P     P    +P PKK KMS+T  TSDD+E         G ++     
Sbjct: 4    SDTTLTSSSLPPPP---PVSAEEPEPKKLKMSTT--TSDDEET--------GTKK----- 45

Query: 333  XXXXXXXXXIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDW 512
                     +AIFFAYCGVGYQGMQKNPGAKTIEG+LEEAL+ +GAVP+ DRG P+RYDW
Sbjct: 46   ---RYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYVSGAVPEQDRGVPKRYDW 102

Query: 513  ARSARTDKGVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDK 692
            ARSARTDKGVSAVGQVVSGRFY+DPPGLV+RLNS LPSQIRIFGYKRVT SFNAKKFCD+
Sbjct: 103  ARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDR 162

Query: 693  RRYVYLIPLFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETD 872
            RRYVYLIP+FALDPS HRDRE+V ASLGSGNELVKCLECSERGRKV+G +G RK + E  
Sbjct: 163  RRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVVGLVGNRKQNLEL- 221

Query: 873  PEVNVAESGILSN-TGGPKSNSEM---QEESQQAADSLENSNDMNVSCEKTKQTARELEN 1040
             E    E+GI SN   G   + E+   + +     +   N N   ++C+   +T   ++ 
Sbjct: 222  -EAVDVEAGISSNRDSGVTEDVEVSLSKGDDNHLNEESGNDNKGGMNCKTGLETVIPVQE 280

Query: 1041 GAIDIVKSDGEKVENQD--GELKVEKSD-------FCYGDKEGERFNRILKTYEGTHNFH 1193
                +   +GE V N D   E KV   D       FCYG+KE ERFN+ILK + GTHNFH
Sbjct: 281  EGTPL---NGESVNNSDILEEEKVNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFH 337

Query: 1194 NFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMR 1373
            NFTTRTKAEDPAA+RYIISF A TT++V+G+EFVKCEV+GQSFMLHQIRKMIGLAVAIMR
Sbjct: 338  NFTTRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMR 397

Query: 1374 NSAPESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAED 1553
            N APESLI+ A +QDVNINVP APEVGLYLDECFFTSYN+KW D H ELSMK+Y +EA++
Sbjct: 398  NCAPESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADE 456

Query: 1554 FKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNNMETNTESLKADAAVGVLSN 1733
            FKMKYIYSHIASTE KEG  ALWLHSLNHRNYPDLR        N +S  AD    +  N
Sbjct: 457  FKMKYIYSHIASTEQKEGTVALWLHSLNHRNYPDLRVINEEAIPNNKS--ADPKEAITDN 514

Query: 1734 SSKADAEGLEPEGIPA*IKE 1793
             S AD E    +   A +KE
Sbjct: 515  KS-ADPEDATTKNKGADLKE 533


>ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Solanum
            tuberosum]
          Length = 569

 Score =  626 bits (1614), Expect = e-176
 Identities = 330/518 (63%), Positives = 380/518 (73%), Gaps = 7/518 (1%)
 Frame = +3

Query: 219  QPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYCGVGYQ 398
            +P PKK KMS+T+ TSDD+E         GA +G             +AIFFAYCGVGYQ
Sbjct: 13   EPQPKKLKMSTTT-TSDDEEYAA------GAGDGSAPERKPRYKRRKVAIFFAYCGVGYQ 65

Query: 399  GMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFY 578
            GMQKNPGAKTIEG+LEEAL+ AG VPDHD+  PR+Y+WARSARTDKGVSAVGQVVSGRFY
Sbjct: 66   GMQKNPGAKTIEGDLEEALYQAGGVPDHDKCQPRKYEWARSARTDKGVSAVGQVVSGRFY 125

Query: 579  VDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRES 758
            VDPPG ++RLNSIL  QIRIFG+KRVT +F+AKKFCDKRRYVYL+P+FALDP  HRDRES
Sbjct: 126  VDPPGFIDRLNSILVPQIRIFGFKRVTNAFSAKKFCDKRRYVYLVPVFALDPYAHRDRES 185

Query: 759  VFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEVNVAESGILSNTGGPKSNSE 938
            V ASLGSG EL KCL C ERGRKV+G MG+R FD  T   V + ++ ++ N   P +++ 
Sbjct: 186  VLASLGSGKELAKCLNCPERGRKVVGVMGRRVFDPITQ-SVIIVDAPVV-NANDPTTDTN 243

Query: 939  MQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELKVEKSD 1118
            M  E++ +              EK ++   E+E              EN   E +VE+S 
Sbjct: 244  MVIENEASLS------------EKVEERNGEVEGSN-----------ENAKMEEQVEESV 280

Query: 1119 FCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVK 1298
            FCYG+KE ERFNRILK YEGTHNFHNFTTRTKA+DPAAKRYIISF A T V VDGI+FVK
Sbjct: 281  FCYGEKEKERFNRILKYYEGTHNFHNFTTRTKADDPAAKRYIISFNANTVVNVDGIDFVK 340

Query: 1299 CEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYLDECFF 1478
            CEV+GQSFMLHQIRKMIGLAVAIMRN APESLI TAFR+DVNINVPMAPEVGLYLDECFF
Sbjct: 341  CEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIVTAFRRDVNINVPMAPEVGLYLDECFF 400

Query: 1479 TSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDL 1658
            TSYN KW D H E+S+K+Y EEAE+FKMKYIYSHIASTE KEG  A+WLHSLNHRNYPDL
Sbjct: 401  TSYNSKWKDTHEEVSLKAYLEEAEEFKMKYIYSHIASTEQKEGTMAVWLHSLNHRNYPDL 460

Query: 1659 R-------AGGNNMETNTESLKADAAVGVLSNSSKADA 1751
            R       AGG      T     +A +G + N    D+
Sbjct: 461  RAVDIVKPAGGGPEVVET---AVEAGLGAVKNGESTDS 495


>gb|EOY18823.1| Pseudouridine synthase [Theobroma cacao]
          Length = 507

 Score =  625 bits (1611), Expect = e-176
 Identities = 331/522 (63%), Positives = 389/522 (74%)
 Frame = +3

Query: 204  PGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYC 383
            P    +P PK+ KMS+T+ TSDD+E   TA+  +G ++              IAIFFAYC
Sbjct: 19   PPTTQEPDPKRLKMSTTT-TSDDEE---TASATNGTKK-------QRYKRRKIAIFFAYC 67

Query: 384  GVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVV 563
            GVGYQGMQKNPGAKTIEG+LEEALFH+GAVP+ DRG P+RYDWARSARTDKGVSAVGQVV
Sbjct: 68   GVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGNPKRYDWARSARTDKGVSAVGQVV 127

Query: 564  SGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRH 743
            SGRFY+DPPGLVERLN ILP+QIRIFGYKRVT SFN+KKFCD+RRYVYLIP+FALDPS H
Sbjct: 128  SGRFYIDPPGLVERLNRILPAQIRIFGYKRVTASFNSKKFCDRRRYVYLIPVFALDPSCH 187

Query: 744  RDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEVNVAESGILSNTGGP 923
            RDRESV ASLGSGNELVKCLECSERGRKV G MGKR F+ ++     +  S + SN G  
Sbjct: 188  RDRESVLASLGSGNELVKCLECSERGRKVAGVMGKRSFEAKS----TIVHSDVSSNNG-- 241

Query: 924  KSNSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELK 1103
            +S + ++E               N++ E  + T   ++N   ++ K + EK+        
Sbjct: 242  ESGNVIKEH--------------NLTSELEEVTDSSVQNEFTEVDKVNVEKI-------P 280

Query: 1104 VEKSDFCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDG 1283
            +E+  FCYG++E   FNRILK Y G+HNFHNFTTRTKAEDP+A+RYI+SF A T V V+G
Sbjct: 281  LEERRFCYGEEEKGLFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIVSFHANTVVNVEG 340

Query: 1284 IEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYL 1463
            I+FVKCEV+GQSFMLHQIRKMIG+AVA+MRN APESLIETA R+DV+INVP APEVGLYL
Sbjct: 341  IDFVKCEVVGQSFMLHQIRKMIGMAVAVMRNCAPESLIETALRKDVSINVPTAPEVGLYL 400

Query: 1464 DECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHR 1643
            DEC F SYN+KW D H ELSMK+Y EEAE+FKMK+IYSHIASTE +EGV ALWLHSLNHR
Sbjct: 401  DECLFASYNQKWKDSHEELSMKAYEEEAEEFKMKFIYSHIASTEREEGVVALWLHSLNHR 460

Query: 1644 NYPDLRAGGNNMETNTESLKADAAVGVLSNSSKADAEGLEPE 1769
            NYPDLR G N       SLK D       N+   DA+    E
Sbjct: 461  NYPDLR-GCNVEMIEGMSLKVD------DNTDNTDAKSASVE 495


>ref|XP_004238400.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Solanum
            lycopersicum]
          Length = 598

 Score =  623 bits (1606), Expect = e-175
 Identities = 324/516 (62%), Positives = 380/516 (73%), Gaps = 6/516 (1%)
 Frame = +3

Query: 219  QPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYCGVGYQ 398
            +P PKKQKMS+T+ TSD++          GA +G             +AIFFAYCGVGYQ
Sbjct: 13   EPQPKKQKMSTTT-TSDEEYAA-------GAGDGSAPERKPRYKRRKVAIFFAYCGVGYQ 64

Query: 399  GMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFY 578
            GMQKNPGAKTIEG+LEEAL+ AG VPDHD+  PR+Y+WARSARTDKGVSAVGQVVSGRFY
Sbjct: 65   GMQKNPGAKTIEGDLEEALYQAGGVPDHDKCQPRKYEWARSARTDKGVSAVGQVVSGRFY 124

Query: 579  VDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRES 758
            VDPPG ++RLNSIL  QIRIFG+KRVT +F+AKKFCDKRRYVYL+P+FALDP  HRDRES
Sbjct: 125  VDPPGFIDRLNSILVPQIRIFGFKRVTNAFSAKKFCDKRRYVYLVPVFALDPYAHRDRES 184

Query: 759  VFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEVNVAESGILSNTGGPKSNSE 938
            V ASLGSG ELVKCL C ERGRKV G MG+R FD  T   + V    + +N         
Sbjct: 185  VLASLGSGKELVKCLNCPERGRKVAGVMGRRVFDPITQSVIIVDAPVVTAN--------- 235

Query: 939  MQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELKVEKSD 1118
                        + + D N+  E     + ++E   ID+V+   E  + ++   +VE+S 
Sbjct: 236  ------------DPTTDTNMIIENEASLSEKVEE-RIDVVERSDENAKKEE---QVEESV 279

Query: 1119 FCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVK 1298
            FCYG+KE ERFNRILK +EGTHNFHNFTTRTKA+DPAAKR+IISF A T V VDGI+FVK
Sbjct: 280  FCYGEKEKERFNRILKYFEGTHNFHNFTTRTKADDPAAKRFIISFNANTVVNVDGIDFVK 339

Query: 1299 CEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYLDECFF 1478
            CEV+GQSFMLHQIRKMIGLAVAIMRN APESLI TAFR+DVNINVPMAPEVGLYLDECFF
Sbjct: 340  CEVIGQSFMLHQIRKMIGLAVAIMRNCAPESLIVTAFRRDVNINVPMAPEVGLYLDECFF 399

Query: 1479 TSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDL 1658
            TSYN KW D H E+S+K+Y EEAE+FK+KYIYSHIASTE KEG  A+WLHSLNHRNYPDL
Sbjct: 400  TSYNSKWKDTHEEVSLKAYLEEAEEFKVKYIYSHIASTEQKEGTMAVWLHSLNHRNYPDL 459

Query: 1659 RA------GGNNMETNTESLKADAAVGVLSNSSKAD 1748
            RA       G  +E    ++  +A +G ++N    D
Sbjct: 460  RAVDIVKPAGGGLEVVETAV--EAGLGAVNNGESTD 493


>ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citrus clementina]
            gi|557537401|gb|ESR48519.1| hypothetical protein
            CICLE_v10000838mg [Citrus clementina]
          Length = 526

 Score =  622 bits (1603), Expect = e-175
 Identities = 330/518 (63%), Positives = 392/518 (75%), Gaps = 21/518 (4%)
 Frame = +3

Query: 186  PSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIA 365
            PS    P +E  P PK+ KMS+TS + D+ +  P AAG D   +              IA
Sbjct: 12   PSPSLSPRQE--PDPKRLKMSATSTSDDERDLIPAAAGADSTTK------RQLCKRRKIA 63

Query: 366  IFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVS 545
            IFFAYCGVGYQGMQKNPGAKTIEG+LEEALFH+GAV + DRG PRRYDWARSARTDKGVS
Sbjct: 64   IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123

Query: 546  AVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFA 725
            AVGQVVSGRF +DPPGLVERLNS LP+QIRIFGYKRVT SFNAKKFCD+RRYVYL+P+FA
Sbjct: 124  AVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183

Query: 726  LDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKF-------DTETDPEVN 884
            LD S HRDRESV ASLGSGNELVKCLECSERGRKVIG MGKR +       D        
Sbjct: 184  LDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQ 243

Query: 885  VAESGILSNTGGPKSNSEMQ--EESQQAADSL--ENSNDMNVSC----EKTKQTAR-ELE 1037
            V    ++S   G + N+ ++  E ++  ++S+  EN+N  +V+      +T +T + E  
Sbjct: 244  VKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENT 303

Query: 1038 NGAIDIVKSDGEKVENQD----GELKVEK-SDFCYGDKEGERFNRILKTYEGTHNFHNFT 1202
            + ++D+   +  KV  ++    GE K+ K S FCYG++E +RFNRILK Y G+HNFHNFT
Sbjct: 304  DLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFT 363

Query: 1203 TRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSA 1382
            TRTKAEDP+A+RYIISF A + V V+GI+F+KCEV+GQSFMLHQIRKMIGLAVA++RN A
Sbjct: 364  TRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCA 423

Query: 1383 PESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKM 1562
            PESLIETA ++DVNINVP APEVGLYLDEC F SYNKKW D H ELSMK+Y EEAE+FKM
Sbjct: 424  PESLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEELSMKAYEEEAENFKM 483

Query: 1563 KYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNN 1676
            K+I+SHIA TE KEGV ALWLHSLN+RNYPDLR  GN+
Sbjct: 484  KHIFSHIARTEQKEGVVALWLHSLNYRNYPDLRFLGND 521


>ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 518

 Score =  616 bits (1589), Expect = e-173
 Identities = 326/491 (66%), Positives = 374/491 (76%), Gaps = 13/491 (2%)
 Frame = +3

Query: 360  IAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKG 539
            +AIFFAYCGVGYQGMQKNPGAKTIEG+LEEAL+ +GAVP+ DRG P+RYDWARSARTDKG
Sbjct: 22   VAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYVSGAVPEQDRGVPKRYDWARSARTDKG 81

Query: 540  VSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPL 719
            VSAVGQVVSGRFY+DPPGLV+RLNS LPSQIRIFGYKRVT SFNAKKFCD+RRYVYLIP+
Sbjct: 82   VSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPV 141

Query: 720  FALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEVNVAESG 899
            FALDPS HRDRE+V ASLGSGNELVKCLECSERGRKV+G +G RK + E   E    E+G
Sbjct: 142  FALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVVGLVGNRKQNLEL--EAVDVEAG 199

Query: 900  ILSN-TGGPKSNSEM---QEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSD 1067
            I SN   G   + E+   + +     +   N N   ++C+   +T   ++     +   +
Sbjct: 200  ISSNRDSGVTEDVEVSLSKGDDNHLNEESGNDNKGGMNCKTGLETVIPVQEEGTPL---N 256

Query: 1068 GEKVENQD--GELKVEKSD-------FCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAE 1220
            GE V N D   E KV   D       FCYG+KE ERFN+ILK + GTHNFHNFTTRTKAE
Sbjct: 257  GESVNNSDILEEEKVNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNFTTRTKAE 316

Query: 1221 DPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIE 1400
            DPAA+RYIISF A TT++V+G+EFVKCEV+GQSFMLHQIRKMIGLAVAIMRN APESLI+
Sbjct: 317  DPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLID 376

Query: 1401 TAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSH 1580
             A +QDVNINVP APEVGLYLDECFFTSYN+KW D H ELSMK+Y +EA++FKMKYIYSH
Sbjct: 377  EALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADEFKMKYIYSH 435

Query: 1581 IASTEHKEGVAALWLHSLNHRNYPDLRAGGNNMETNTESLKADAAVGVLSNSSKADAEGL 1760
            IASTE KEG  ALWLHSLNHRNYPDLR        N +S  AD    +  N S AD E  
Sbjct: 436  IASTEQKEGTVALWLHSLNHRNYPDLRVINEEAIPNNKS--ADPKEAITDNKS-ADPEDA 492

Query: 1761 EPEGIPA*IKE 1793
              +   A +KE
Sbjct: 493  TTKNKGADLKE 503


>gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp. melo]
          Length = 519

 Score =  614 bits (1584), Expect = e-173
 Identities = 327/512 (63%), Positives = 376/512 (73%), Gaps = 13/512 (2%)
 Frame = +3

Query: 165  MEAESLSPSRQFHPGEEVQ-PVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXX 341
            ME E  + +R+  P   ++ P PKK KMSST+ TSDD++    +A     +         
Sbjct: 1    MEEEPPTETRRSPPQPLIEEPDPKKLKMSSTTTTSDDEDVNSNSAAPKKQR--------- 51

Query: 342  XXXXXXIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARS 521
                  +AIFFAYCGVGYQGMQKNPGAKTIE +LEEAL+ AGAVP+ DRG  +RYDWARS
Sbjct: 52   -YKRRKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARS 110

Query: 522  ARTDKGVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRY 701
            ARTDKGVSAVGQVVSGRFY+DPPG V+RLNS L  QIRIFGYKRVT SFNAKKFCD+RRY
Sbjct: 111  ARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRY 170

Query: 702  VYLIPLFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEV 881
            VYLIP+FALDP+ HRDRESV ASLGS NELVKCLECSERGRKV G MGKR F+ +T    
Sbjct: 171  VYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLMGKRNFEVKTA--- 227

Query: 882  NVAESGILSNTGGPKSNSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVK 1061
             + ES I SN       S++Q       DS   S+    +    + TA EL   +  I K
Sbjct: 228  -ITESDISSNIVNAIEVSDVQANGV-LEDSATTSDSNKQTSVLVENTATELTVASEGIAK 285

Query: 1062 SDGEKVEN--QDGELKVEKSD----------FCYGDKEGERFNRILKTYEGTHNFHNFTT 1205
            S+  ++     D E+ V K            F YG++E  RFNRILK Y GTHNFHNFTT
Sbjct: 286  SESSEMSGLGNDSEIVVSKESVNGKEKPSGSFKYGEEEKARFNRILKHYVGTHNFHNFTT 345

Query: 1206 RTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAP 1385
            RTKAEDPAA+R+I+SF+A TTV+V+GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN AP
Sbjct: 346  RTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAP 405

Query: 1386 ESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMK 1565
            ESLIE A ++DVNINVP APEVGLYLDEC FTSYN+KW D H E+SMK+Y E AEDFKMK
Sbjct: 406  ESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEVAEDFKMK 465

Query: 1566 YIYSHIASTEHKEGVAALWLHSLNHRNYPDLR 1661
             IYSHIASTEHK+G  ALWLHSLNHRNYPDLR
Sbjct: 466  QIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497


>ref|XP_006473737.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Citrus
            sinensis]
          Length = 526

 Score =  613 bits (1582), Expect = e-173
 Identities = 325/518 (62%), Positives = 389/518 (75%), Gaps = 21/518 (4%)
 Frame = +3

Query: 186  PSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIA 365
            PS    P +E  P PK+ KMS+T+ + D+ +  P AAG D   +              IA
Sbjct: 12   PSPSLSPRQE--PDPKRLKMSATTTSDDERDLIPAAAGADSTTK------RQLCKRRKIA 63

Query: 366  IFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVS 545
            IFFAYCGVGYQGMQKNPGAKTIEG+LEEALFH+GAV + DRG PRRYDWARSARTDKGVS
Sbjct: 64   IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVS 123

Query: 546  AVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFA 725
            AVGQVVSGRF +DPPGLVERLN  LP+QIRIFGYKRVT SFNAKKFCD+RRYVYL+P+FA
Sbjct: 124  AVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFA 183

Query: 726  LDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKF-------DTETDPEVN 884
            LD S HRDRESV ASLGSGNELVKCLECSERGRKVIG MGKR +       D        
Sbjct: 184  LDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQ 243

Query: 885  VAESGILSNTGGPKSNSEMQ--EESQQAADS--LENSNDMNVSC----EKTKQTAR-ELE 1037
            V    ++S   G + N+ ++  E ++  ++S  +EN+N  +V+      +T +T + E  
Sbjct: 244  VKVDTVVSTCNGDRHNTNLESVESNKTISESAMVENANSESVNETLVESRTSETVQNENT 303

Query: 1038 NGAIDIVKSDGEKVENQD----GELKVEK-SDFCYGDKEGERFNRILKTYEGTHNFHNFT 1202
            + ++D+   +  KV  ++    GE K+ K S FCYG++E +RFNRILK Y G+HNFHNFT
Sbjct: 304  DLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFT 363

Query: 1203 TRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSA 1382
            TRTKAEDP+A+RYIISF A + V V+GI+F+KCEV+GQSFMLHQIRKMIGLAVA++RN A
Sbjct: 364  TRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCA 423

Query: 1383 PESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKM 1562
            P+SLIETA ++DVNINVP APEVGLYLDEC F SYNKKW D H ELSMK+Y EEAE+FKM
Sbjct: 424  PQSLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEELSMKAYEEEAENFKM 483

Query: 1563 KYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNN 1676
            K+I+SHI  TE KEGV ALWLHSLN+RNYPDL   GN+
Sbjct: 484  KHIFSHITRTEQKEGVVALWLHSLNYRNYPDLHFLGND 521


>gb|ESW26894.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
            gi|561028256|gb|ESW26896.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 586

 Score =  613 bits (1580), Expect = e-172
 Identities = 331/531 (62%), Positives = 382/531 (71%), Gaps = 19/531 (3%)
 Frame = +3

Query: 219  QPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYCGVGYQ 398
            +P PKK KMS+TS    DDE   TA G     +              IAIFFAYCGVGYQ
Sbjct: 23   EPEPKKLKMSTTS----DDEECTTAPGAKKRYK-----------RRKIAIFFAYCGVGYQ 67

Query: 399  GMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFY 578
            GMQKNPGAKTIEG+LEEAL+ +GAVP+HDRG P+RYDWARSARTDKGVSAVGQVVSGRFY
Sbjct: 68   GMQKNPGAKTIEGDLEEALYVSGAVPEHDRGIPKRYDWARSARTDKGVSAVGQVVSGRFY 127

Query: 579  VDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRES 758
            +DPPGLV+RLNS L SQIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FALDP  HRDRE+
Sbjct: 128  IDPPGLVDRLNSNLHSQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFALDPCCHRDRET 187

Query: 759  VFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEVNVAESGILSNT-------- 914
            V ASLGS NELVKCLECSERGRKV+G +G RK + E   E    E+GI SNT        
Sbjct: 188  VMASLGSTNELVKCLECSERGRKVVGLVGNRKHNLEL--EAMDVEAGISSNTDVVLDSVV 245

Query: 915  -GGPKSNSEMQEESQQAADS-LENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQ 1088
             G  +++    +++    +S ++N   + V     K    +      +++  +GE V N 
Sbjct: 246  TGDVEASLSKGDDNHLNGESGIDNKGKVLVDGTNLKTGIEKGIPVQDEVMPLNGESVNNS 305

Query: 1089 D--------GELK-VEKSDFCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRY 1241
            D        GE K    S FCYG+KE ERFN+IL  + GTHNFHNFTTRTKAEDPAA+RY
Sbjct: 306  DIIEEEKMNGEDKSTSGSMFCYGEKERERFNKILNCFVGTHNFHNFTTRTKAEDPAARRY 365

Query: 1242 IISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDV 1421
            IISF A T   V+GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN APESLI  A +QDV
Sbjct: 366  IISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLINKALQQDV 425

Query: 1422 NINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHK 1601
            NINVP APEVGLYLDECFF+SYN+KW D H ELSMK+Y +EAE+FKMKYIYSHI+ TE K
Sbjct: 426  NINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMKAYEKEAEEFKMKYIYSHISFTEQK 485

Query: 1602 EGVAALWLHSLNHRNYPDLRAGGNNMETNTESLKADAAVGVLSNSSKADAE 1754
            EG  ALWLHSLNHRNYPDLR       T+ +S   + A+   S+   AD E
Sbjct: 486  EGTVALWLHSLNHRNYPDLRVVNEEAITDNKSADPEQAI---SDRKSADPE 533


>ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis
            sativus]
          Length = 519

 Score =  613 bits (1580), Expect = e-172
 Identities = 329/515 (63%), Positives = 385/515 (74%), Gaps = 16/515 (3%)
 Frame = +3

Query: 165  MEAESLSPSRQFHPGEEVQ-PVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXX 341
            ME E  + +R+  P   ++ P PKK KMSST+ TSDD++    +A     +         
Sbjct: 1    MEEEPPTETRRSPPQPLIEEPQPKKLKMSSTTTTSDDEDVNSNSAAPKKQR--------- 51

Query: 342  XXXXXXIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARS 521
                  +AIFFAYCGVGYQGMQKNPGAKTIE +LEEAL+ AGAVP+ DRG  +RYDWARS
Sbjct: 52   -YKRRKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARS 110

Query: 522  ARTDKGVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRY 701
            ARTDKGVSAVGQVVSGRFY+DPPG V+RLNS L  QIRIFGYKRVT SFNAKKFCD+RRY
Sbjct: 111  ARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRY 170

Query: 702  VYLIPLFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEV 881
            VYLIP+FALDP+ HRDRESV ASLGS NELVKCLECSERGRKV G +GKR F+ +T    
Sbjct: 171  VYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTA--- 227

Query: 882  NVAESGILSNTGGPKSNSEMQ-----EESQQAADS-------LENS-NDMNVSCEKTKQT 1022
             + ES I SNT      S++Q     E+S   +DS       +EN+  ++NV  E T ++
Sbjct: 228  -ITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGSEGTAKS 286

Query: 1023 ARELENGAIDIVKSDGEKVENQDGELKVEKSD--FCYGDKEGERFNRILKTYEGTHNFHN 1196
                E+  +  + SD E V +++     EKS   F YG++E  RFNRILK Y GTHNFHN
Sbjct: 287  ----ESSEMSGLGSDSEIVVSKESVNGKEKSSGSFKYGEEEKARFNRILKHYVGTHNFHN 342

Query: 1197 FTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRN 1376
            FTTRTKAEDPAA+R+I+SF+A   V+V+GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN
Sbjct: 343  FTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRN 402

Query: 1377 SAPESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDF 1556
             APESLIE A ++DVNINVP APEVGLYLDEC FTSYN+KW D H E+SMK+Y E AEDF
Sbjct: 403  CAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDF 462

Query: 1557 KMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLR 1661
            KMK IYSHIASTEHK+G  ALWLHSLNHRNYPDLR
Sbjct: 463  KMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497


>ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
            mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  611 bits (1575), Expect = e-172
 Identities = 328/515 (63%), Positives = 384/515 (74%), Gaps = 16/515 (3%)
 Frame = +3

Query: 165  MEAESLSPSRQFHPGEEVQ-PVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXX 341
            ME E  + +R+  P   ++ P PKK KMSST+ TSDD++    +A     +         
Sbjct: 1    MEEEPPTETRRSPPQPLIEEPQPKKLKMSSTTTTSDDEDVNSNSAAPKKQR--------- 51

Query: 342  XXXXXXIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARS 521
                  +A FFAYCGVGYQGMQKNPGAKTIE +LEEAL+ AGAVP+ DRG  +RYDWARS
Sbjct: 52   -YKRRKVAXFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARS 110

Query: 522  ARTDKGVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRY 701
            ARTDKGVSAVGQVVSGRFY+DPPG V+RLNS L  QIRIFGYKRVT SFNAKKFCD+RRY
Sbjct: 111  ARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRY 170

Query: 702  VYLIPLFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEV 881
            VYLIP+FALDP+ HRDRESV ASLGS NELVKCLECSERGRKV G +GKR F+ +T    
Sbjct: 171  VYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTA--- 227

Query: 882  NVAESGILSNTGGPKSNSEMQ-----EESQQAADS-------LENS-NDMNVSCEKTKQT 1022
             + ES I SNT      S++Q     E+S   +DS       +EN+  ++NV  E T ++
Sbjct: 228  -ITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGSEGTAKS 286

Query: 1023 ARELENGAIDIVKSDGEKVENQDGELKVEKSD--FCYGDKEGERFNRILKTYEGTHNFHN 1196
                E+  +  + SD E V +++     EKS   F YG++E  RFNRILK Y GTHNFHN
Sbjct: 287  ----ESSEMSGLGSDSEIVVSKESVNGKEKSSGSFKYGEEEKARFNRILKHYVGTHNFHN 342

Query: 1197 FTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRN 1376
            FTTRTKAEDPAA+R+I+SF+A   V+V+GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN
Sbjct: 343  FTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRN 402

Query: 1377 SAPESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDF 1556
             APESLIE A ++DVNINVP APEVGLYLDEC FTSYN+KW D H E+SMK+Y E AEDF
Sbjct: 403  CAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDF 462

Query: 1557 KMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLR 1661
            KMK IYSHIASTEHK+G  ALWLHSLNHRNYPDLR
Sbjct: 463  KMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497


>gb|ESW26895.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 556

 Score =  603 bits (1556), Expect = e-170
 Identities = 323/518 (62%), Positives = 374/518 (72%), Gaps = 19/518 (3%)
 Frame = +3

Query: 258  ATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYCGVGYQGMQKNPGAKTIEG 437
            +T+ DDE   TA G     +              IAIFFAYCGVGYQGMQKNPGAKTIEG
Sbjct: 2    STTSDDEECTTAPGAKKRYK-----------RRKIAIFFAYCGVGYQGMQKNPGAKTIEG 50

Query: 438  ELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFYVDPPGLVERLNSI 617
            +LEEAL+ +GAVP+HDRG P+RYDWARSARTDKGVSAVGQVVSGRFY+DPPGLV+RLNS 
Sbjct: 51   DLEEALYVSGAVPEHDRGIPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSN 110

Query: 618  LPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRESVFASLGSGNELVK 797
            L SQIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FALDP  HRDRE+V ASLGS NELVK
Sbjct: 111  LHSQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFALDPCCHRDRETVMASLGSTNELVK 170

Query: 798  CLECSERGRKVIGRMGKRKFDTETDPEVNVAESGILSNT---------GGPKSNSEMQEE 950
            CLECSERGRKV+G +G RK + E   E    E+GI SNT         G  +++    ++
Sbjct: 171  CLECSERGRKVVGLVGNRKHNLEL--EAMDVEAGISSNTDVVLDSVVTGDVEASLSKGDD 228

Query: 951  SQQAADS-LENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQD--------GELK 1103
            +    +S ++N   + V     K    +      +++  +GE V N D        GE K
Sbjct: 229  NHLNGESGIDNKGKVLVDGTNLKTGIEKGIPVQDEVMPLNGESVNNSDIIEEEKMNGEDK 288

Query: 1104 -VEKSDFCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVD 1280
                S FCYG+KE ERFN+IL  + GTHNFHNFTTRTKAEDPAA+RYIISF A T   V+
Sbjct: 289  STSGSMFCYGEKERERFNKILNCFVGTHNFHNFTTRTKAEDPAARRYIISFNANTAFAVE 348

Query: 1281 GIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLY 1460
            GIEFVKCEV+GQSFMLHQIRKM+GLAVAIMRN APESLI  A +QDVNINVP APEVGLY
Sbjct: 349  GIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLINKALQQDVNINVPTAPEVGLY 408

Query: 1461 LDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNH 1640
            LDECFF+SYN+KW D H ELSMK+Y +EAE+FKMKYIYSHI+ TE KEG  ALWLHSLNH
Sbjct: 409  LDECFFSSYNQKWKDSHEELSMKAYEKEAEEFKMKYIYSHISFTEQKEGTVALWLHSLNH 468

Query: 1641 RNYPDLRAGGNNMETNTESLKADAAVGVLSNSSKADAE 1754
            RNYPDLR       T+ +S   + A+   S+   AD E
Sbjct: 469  RNYPDLRVVNEEAITDNKSADPEQAI---SDRKSADPE 503


>ref|XP_004292926.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
            [Fragaria vesca subsp. vesca]
          Length = 591

 Score =  595 bits (1535), Expect = e-167
 Identities = 319/499 (63%), Positives = 355/499 (71%), Gaps = 4/499 (0%)
 Frame = +3

Query: 204  PGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYC 383
            P  + QP PKK KMS+T  T+DD++   T                       +AIFFAYC
Sbjct: 16   PPPQQQPDPKKLKMSTT--TTDDEQTAATTQ-------------KQRLKRRKVAIFFAYC 60

Query: 384  GVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVV 563
            GVGYQGMQKNPGAKTIEG+LEEAL+ +GAVP+ DR  P+RYDWARSARTDKGVSAVGQVV
Sbjct: 61   GVGYQGMQKNPGAKTIEGDLEEALYLSGAVPEQDRSNPKRYDWARSARTDKGVSAVGQVV 120

Query: 564  SGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRH 743
            SGRFYVDPPG V+RLNS L  QIRIFGYKRVT SFNAKKFCD+RRYVYLIP+FALDPS H
Sbjct: 121  SGRFYVDPPGFVDRLNSHLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSAH 180

Query: 744  RDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEVNVAESGILSNTGGP 923
            RDRESV ASLGS  E VKCLECS+RGRKV G MGKR +                   GG 
Sbjct: 181  RDRESVKASLGSDEEFVKCLECSDRGRKVGGLMGKRTYQLR----------------GGN 224

Query: 924  KSNSEMQEESQQAADSLENSNDM----NVSCEKTKQTARELENGAIDIVKSDGEKVENQD 1091
              NSE   E     D ++  ND+    NV        + E  NG        GEK     
Sbjct: 225  SYNSESVTEIS-TNDDMKIDNDIEGEDNVVVGNADMNSAEEVNG--------GEKKA--- 272

Query: 1092 GELKVEKSDFCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTV 1271
                VE S FCYG+KE ERFNRIL  Y+GTHNFHNFTTRTKAEDPAA RYIISF A  TV
Sbjct: 273  ----VEGSGFCYGEKEKERFNRILSCYQGTHNFHNFTTRTKAEDPAAIRYIISFSANATV 328

Query: 1272 IVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEV 1451
             V+GIEFVKCEV+GQSFMLHQIRK+IGLAVAIMRN APESL+E A ++DVN+NVP APEV
Sbjct: 329  TVEGIEFVKCEVVGQSFMLHQIRKLIGLAVAIMRNCAPESLLERALQKDVNVNVPTAPEV 388

Query: 1452 GLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHS 1631
            GLYLDECFF+SYN+KWGD H E+SMK Y  EAE FKMK+IY+HI +TEHKEGV  LWLHS
Sbjct: 389  GLYLDECFFSSYNQKWGDTHEEVSMKGYEAEAEAFKMKHIYTHIGATEHKEGVVGLWLHS 448

Query: 1632 LNHRNYPDLRAGGNNMETN 1688
            LNHRNYPDL A  N   +N
Sbjct: 449  LNHRNYPDLGAENNGDTSN 467


>emb|CBI18897.3| unnamed protein product [Vitis vinifera]
          Length = 419

 Score =  593 bits (1529), Expect = e-167
 Identities = 304/425 (71%), Positives = 346/425 (81%), Gaps = 1/425 (0%)
 Frame = +3

Query: 402  MQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFYV 581
            MQKNPGAKTIEG+LEEALF +GAVP+ DRG P+R+DWARSARTDKGVSAVGQVVSGRFY+
Sbjct: 1    MQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYI 60

Query: 582  DPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRESV 761
            DPPGLVERLNS LP QIRIFG+KRVT SFNAKKFCD+RRYVYLIP+FALDPS H DRESV
Sbjct: 61   DPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESV 120

Query: 762  FASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDPEVNVAESGILSNTGGPKSNSEM 941
             AS+GS NELVKCLECSERGRKV+G MGKRK +++     N+ + GI SN      NSE+
Sbjct: 121  LASVGSENELVKCLECSERGRKVVGIMGKRKGESK-----NIVQLGIPSNDEAAIVNSEV 175

Query: 942  QEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELKVEK-SD 1118
            QEE +  A S  N+ D N S  +T              +K +  K+ ++ GE K+EK S 
Sbjct: 176  QEEIK--ATSNNNNIDANNSISET--------------IKEEAAKLSSE-GENKLEKGSG 218

Query: 1119 FCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVK 1298
            FCYGDKE ERFNRIL  Y GTHNFHNFTTR KAEDP+A+R+I+SF+  T V V+GIEFVK
Sbjct: 219  FCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVK 278

Query: 1299 CEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYLDECFF 1478
            CEV+GQSFMLHQIRKMIGLAVAIMRN APESL+ETA  +DVNINVP APEVGLYLDECFF
Sbjct: 279  CEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFF 338

Query: 1479 TSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPDL 1658
            +SYNKKW D H E+SMK+YAEEAE+FKMK++YSHIA+TEHKEGV ALWLHSLNHRNYPDL
Sbjct: 339  SSYNKKWRDSHEEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDL 398

Query: 1659 RAGGN 1673
              G N
Sbjct: 399  CIGDN 403


>ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula]
            gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase
            [Medicago truncatula] gi|388510220|gb|AFK43176.1| unknown
            [Medicago truncatula]
          Length = 530

 Score =  588 bits (1516), Expect = e-165
 Identities = 315/530 (59%), Positives = 377/530 (71%), Gaps = 19/530 (3%)
 Frame = +3

Query: 177  SLSPSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXX 356
            S+S S         +P  KK KMS+T++   DDE   TA G                   
Sbjct: 9    SISSSPALPSAVAEEPATKKVKMSTTTS---DDEGCTTAEG-----------SKVRYKRR 54

Query: 357  XIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDK 536
             +AIFFAYCGVGYQGMQKNPGAKTIEGELEEAL+ +GAVP+ DRG  +RYDWARSARTDK
Sbjct: 55   KVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDK 114

Query: 537  GVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIP 716
            GVSAVGQVVSGRFY+DPPG V+RLNS LPSQIRIFG+KRVT SF+AKKFCD+RRYVYLIP
Sbjct: 115  GVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174

Query: 717  LFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDP------- 875
            +FALDP  HRDRE+V ASLGS NELVKCL CSERGRKV G +G  K + E +        
Sbjct: 175  VFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGS 234

Query: 876  --EVNVAESGILSNTGGPKSNSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAI 1049
              + +V +SG+  +     S  +    ++++     N N+  VS E+    ++ + +   
Sbjct: 235  SNKNDVVDSGVTKDVEVSLSKGDDNHLNKESI----NDNEGKVSVEEVN--SKTVVSDQD 288

Query: 1050 DIVKSDGEKVENQDGELKVEK----------SDFCYGDKEGERFNRILKTYEGTHNFHNF 1199
            ++   +G   EN  G L+ EK          S FCYG+KE ERFN ILK Y GTHNFHNF
Sbjct: 289  EVAPINGGS-ENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNFHNF 347

Query: 1200 TTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNS 1379
            TTR K EDP+AKR+IISF+A TTV+V+G+EFVKCE++GQSFMLHQIRKM+GLAVAIMRN 
Sbjct: 348  TTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNC 407

Query: 1380 APESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFK 1559
            APESLIE A ++DV+I VP APEVGLYLDECFFTSYN+KW D H E+SMK+Y +EAEDFK
Sbjct: 408  APESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFK 467

Query: 1560 MKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNNMETNTESLKAD 1709
            M+YIY HIASTE+KEG   LWLHSLNHRNYPDLR       TN + ++ D
Sbjct: 468  MQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVD 517


>ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago truncatula]
            gi|355511411|gb|AES92553.1| tRNA pseudouridine synthase
            [Medicago truncatula]
          Length = 530

 Score =  588 bits (1516), Expect = e-165
 Identities = 315/530 (59%), Positives = 377/530 (71%), Gaps = 19/530 (3%)
 Frame = +3

Query: 177  SLSPSRQFHPGEEVQPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXX 356
            S+S S         +P  KK KMS+T++   DDE   TA G                   
Sbjct: 9    SISSSPALPSAVAEEPATKKVKMSTTTS---DDEGCTTAEG-----------SKVRYKRR 54

Query: 357  XIAIFFAYCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDK 536
             +AIFFAYCGVGYQGMQKNPGAKTIEGELEEAL+ +GAVP+ DRG  +RYDWARSARTDK
Sbjct: 55   KVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDK 114

Query: 537  GVSAVGQVVSGRFYVDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIP 716
            GVSAVGQVVSGRFY+DPPG V+RLNS LPSQIRIFG+KRVT SF+AKKFCD+RRYVYLIP
Sbjct: 115  GVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174

Query: 717  LFALDPSRHRDRESVFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDP------- 875
            +FALDP  HRDRE+V ASLGS NELVKCL CSERGRKV G +G  K + E +        
Sbjct: 175  VFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGS 234

Query: 876  --EVNVAESGILSNTGGPKSNSEMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAI 1049
              + +V +SG+  +     S  +    ++++     N N+  VS E+    ++ + +   
Sbjct: 235  SNKNDVVDSGVTKDVEVSLSKGDDNHLNKESI----NDNEGKVSVEEVN--SKTVVSDED 288

Query: 1050 DIVKSDGEKVENQDGELKVEK----------SDFCYGDKEGERFNRILKTYEGTHNFHNF 1199
            ++   +G   EN  G L+ EK          S FCYG+KE ERFN ILK Y GTHNFHNF
Sbjct: 289  EVAPINGGS-ENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNFHNF 347

Query: 1200 TTRTKAEDPAAKRYIISFEAKTTVIVDGIEFVKCEVLGQSFMLHQIRKMIGLAVAIMRNS 1379
            TTR K EDP+AKR+IISF+A TTV+V+G+EFVKCE++GQSFMLHQIRKM+GLAVAIMRN 
Sbjct: 348  TTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNC 407

Query: 1380 APESLIETAFRQDVNINVPMAPEVGLYLDECFFTSYNKKWGDGHGELSMKSYAEEAEDFK 1559
            APESLIE A ++DV+I VP APEVGLYLDECFFTSYN+KW D H E+SMK+Y +EAEDFK
Sbjct: 408  APESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFK 467

Query: 1560 MKYIYSHIASTEHKEGVAALWLHSLNHRNYPDLRAGGNNMETNTESLKAD 1709
            M+YIY HIASTE+KEG   LWLHSLNHRNYPDLR       TN + ++ D
Sbjct: 468  MQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKVEVD 517


>ref|XP_004507719.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X1 [Cicer arietinum]
          Length = 505

 Score =  586 bits (1510), Expect = e-164
 Identities = 303/482 (62%), Positives = 360/482 (74%), Gaps = 1/482 (0%)
 Frame = +3

Query: 219  QPVPKKQKMSSTSATSDDDEREPTAAGVDGAQEGXXXXXXXXXXXXXIAIFFAYCGVGYQ 398
            +P  KK KMS+T++   DDE    AAG     +              +AI FAYCGVGYQ
Sbjct: 23   EPQTKKAKMSTTTS---DDEECTAAAGTKVRYK-----------RRKVAILFAYCGVGYQ 68

Query: 399  GMQKNPGAKTIEGELEEALFHAGAVPDHDRGCPRRYDWARSARTDKGVSAVGQVVSGRFY 578
            GMQKNPGAKTIEGE+EEAL+ +GAVP+ DRG  +RYDWARSARTDKGVSAVGQVVSGRFY
Sbjct: 69   GMQKNPGAKTIEGEIEEALYVSGAVPEQDRGMSKRYDWARSARTDKGVSAVGQVVSGRFY 128

Query: 579  VDPPGLVERLNSILPSQIRIFGYKRVTKSFNAKKFCDKRRYVYLIPLFALDPSRHRDRES 758
            +DPPG V+RLNS LPSQIRIFGYKRVT SF+AKKFCD+RRYVYLIP+FALDP  HRDRE+
Sbjct: 129  IDPPGFVDRLNSNLPSQIRIFGYKRVTASFSAKKFCDRRRYVYLIPVFALDPCCHRDRET 188

Query: 759  VFASLGSGNELVKCLECSERGRKVIGRMGKRKFDTETDP-EVNVAESGILSNTGGPKSNS 935
            V ASLGS NELVKCLECSERGRKV G +G  K + E +  +V   + G  + +     N 
Sbjct: 189  VLASLGSENELVKCLECSERGRKVEGLVGNSKRNLELEAMDVETTDKGDDNRSNKESIND 248

Query: 936  EMQEESQQAADSLENSNDMNVSCEKTKQTARELENGAIDIVKSDGEKVENQDGELKVEKS 1115
               + S +  +S  +   +    ++        EN +  +   + EKV  +D   K  +S
Sbjct: 249  NEGKVSVEDVNSKTSFETVVSGQDEVSPLNGGSENNSAVL---EEEKVNGEDTPAK--RS 303

Query: 1116 DFCYGDKEGERFNRILKTYEGTHNFHNFTTRTKAEDPAAKRYIISFEAKTTVIVDGIEFV 1295
            +FCYG+KE ERFN+ILK+Y GTHNFHNFTTR K EDP+AKR+IISF+A  TV+++G+EFV
Sbjct: 304  EFCYGEKERERFNKILKSYVGTHNFHNFTTRIKPEDPSAKRFIISFDASNTVVIEGMEFV 363

Query: 1296 KCEVLGQSFMLHQIRKMIGLAVAIMRNSAPESLIETAFRQDVNINVPMAPEVGLYLDECF 1475
            KCE++GQSFMLHQIRKM+GLAVAIMRN APESLIE A + DV+I VP APEVGLYLDECF
Sbjct: 364  KCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQTDVSITVPTAPEVGLYLDECF 423

Query: 1476 FTSYNKKWGDGHGELSMKSYAEEAEDFKMKYIYSHIASTEHKEGVAALWLHSLNHRNYPD 1655
            FTSYN+KW D H E+SMK+Y +EAEDFKMK+IYSHIASTE KEG   LWLHSLNHRNY D
Sbjct: 424  FTSYNQKWKDTHEEVSMKAYEKEAEDFKMKFIYSHIASTEQKEGTVGLWLHSLNHRNYSD 483

Query: 1656 LR 1661
            LR
Sbjct: 484  LR 485