BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00000520
         (4423 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1593   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1584   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1559   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...  1558   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1547   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1542   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1529   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1523   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1518   0.0  
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...  1510   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1494   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1493   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1486   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1477   0.0  
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...  1439   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]      1437   0.0  
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise...  1434   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...  1431   0.0  
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...  1417   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1416   0.0  

>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1593 bits (4125), Expect = 0.0
 Identities = 781/1095 (71%), Positives = 917/1095 (83%), Gaps = 3/1095 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQVFGFPYL+SAEAV + LE +TGNG++YALEVKQSKGGRRA+A+VQF +N+SAE 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II +AS + LYYG SYLKAWEM  D+V +PRT+V  M+ + LNFGCQ+S  KFAVL    
Sbjct: 61   IIDLAS-KGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGSK- 117

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
            + S+KFGIGLKKIYFFLS A  DYKL+L  EN+WQ+VLH P GQ+A+FLL+QLFGAPRI+
Sbjct: 118  DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIY 177

Query: 3320 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 3141
            K++E S YS+F +T DDQWVRTTDFT S IG SS +CLE  +GVQLP F++ F +YKES 
Sbjct: 178  KRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKESM 237

Query: 3140 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2967
            N F+L+TG ++S+S+   LVPIVH P G++LP+ ILFKI SL+Q GC PG  L+ NFFQL
Sbjct: 238  NQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQL 297

Query: 2966 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2787
            ++P++ ++  IE+ALE LY LKECCY+PVRWL E + +++  +++PKSP I+LD+GLVY+
Sbjct: 298  VDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYV 357

Query: 2786 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2607
            RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K+ STDL  R+S+G+
Sbjct: 358  RRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGN 417

Query: 2606 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 2427
            G +T+IY RILS L+ G  IGDK+F+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 418  GTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGD 477

Query: 2426 FSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 2247
            F  IRNVAKYAARLGQ            R E+E+IPD+        YIFSDGIGKISA+F
Sbjct: 478  FRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISADF 537

Query: 2246 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 2067
            A RV IKCGL+  TPS+FQIRYGG+KGVVAVDP SS KLSLRKSM+KY+S+NIKLDVL W
Sbjct: 538  AHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGW 596

Query: 2066 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 1887
            SKYQPC+LNRQL+TLLSTLGV D VLE+KQ EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 597  SKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENT 656

Query: 1886 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 1707
            NIL+E+L CGY PD+EPFLSMML  FRASK+LDLR + RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 657  NILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEY 716

Query: 1706 GQVFVQLSGACRRQLYDDSELFYENYSDKT-FILERMVVVAKNPCLHPGDIRVLKAVDVP 1530
            GQVFVQ SGA RRQ +++S  F ++ S    FIL+  VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 717  GQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVP 776

Query: 1529 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 1350
            ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD DLIPP Q   MDYTPAPT QL
Sbjct: 777  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQL 836

Query: 1349 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 1170
            DH+VTIEE+ EYFTNYI+NDSLGII+NAH VFADREP  AMSDPC +LA LFSIAVDFPK
Sbjct: 837  DHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPK 896

Query: 1169 TGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAK 990
            TGVPAEIPS LR KEYPDFMEKPDKPTY SE VIGKLF++VK+  P  SSI +FTR+VA+
Sbjct: 897  TGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVAR 956

Query: 989  RSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 810
            +SYD+D+ V GFEDY+DEAF YK+EYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDRR
Sbjct: 957  KSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR 1016

Query: 809  KDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHYI 630
            KDAEA+G+AVR LRKEAR+WFKR  D+DD  AKASAWYHVTYH TYWG+YNEGL R H+I
Sbjct: 1017 KDAEAIGVAVRCLRKEARAWFKRRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFI 1076

Query: 629  SFPWCVYDKLIHIKR 585
            SFPWCVYD+LI IK+
Sbjct: 1077 SFPWCVYDQLIQIKK 1091


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1584 bits (4102), Expect = 0.0
 Identities = 777/1096 (70%), Positives = 911/1096 (83%), Gaps = 4/1096 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQVFGFPYL+SAEAV   LE +TGNG++YALEVKQSKGGRRA+A+VQF +N+SAEI
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II +AS + LYYG SYLKAWEM   +V +PRT+V  M+ + LNFGCQ+S  KFAVL    
Sbjct: 61   IIDLAS-KGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGSKV 118

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
              S+KFGIGLKKIYFFLS    DYKL+L  EN+WQ+VLH P GQ A+FLL+QL GAPRI+
Sbjct: 119  -VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIY 177

Query: 3320 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 3141
            K++E S YS+F +T DDQWVRTTDFT S IG SS +CLE  +GV+LP F++ F +YKES 
Sbjct: 178  KRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGVRLPNFSESFFYYKESA 237

Query: 3140 NPFVLETGPSYSYSR---VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQ 2970
            N  +L+TG ++S+S+    LVPIVH P G++LP+ ILFKI SL+Q GC PG  L+ NFFQ
Sbjct: 238  NQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQ 297

Query: 2969 LLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVY 2790
            L++P++ ++  IE+ALE LY LKECCY+PVRWL E + +++  +++PKSP+I+LD+GLVY
Sbjct: 298  LVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVY 357

Query: 2789 IRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSG 2610
            +RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K+ STDL  R+S+G
Sbjct: 358  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTG 417

Query: 2609 SGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMG 2430
            +G +T+IY RILS L+ G  IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMG
Sbjct: 418  NGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMG 477

Query: 2429 DFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAE 2250
             F  IRNVAKYAARLGQ            R E+E+IPD+V       YIFSDGIGKISA+
Sbjct: 478  GFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISAD 537

Query: 2249 FARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLA 2070
            FARRVA+KCGL+  TPS FQIRYGG+KGVVAVDP SS KLSLR SM+KY+S+NIKLDVL 
Sbjct: 538  FARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLG 596

Query: 2069 WSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGEN 1890
            WSKYQPC+LNRQL+TLLSTLGVKD V E+KQ EA+ QLD IL D L+A EALELM+PGEN
Sbjct: 597  WSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGEN 656

Query: 1889 TNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLE 1710
            TNIL+E+L CGY PD+EPFLSMML  FRASK+LDLR ++RIFIP+ R+MMGCLDE+ TLE
Sbjct: 657  TNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLE 716

Query: 1709 YGQVFVQLSGACRRQLYDDSELFYENYSDKT-FILERMVVVAKNPCLHPGDIRVLKAVDV 1533
            YGQVFVQ +G  RRQ Y++S  F ++ S    FILE  VVVAKNPCLHPGDIRVL+AVDV
Sbjct: 717  YGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDV 776

Query: 1532 PALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQ 1353
            PALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD DL+PP Q  PMDYTPAP+ Q
Sbjct: 777  PALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQ 836

Query: 1352 LDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFP 1173
            LDH+VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP  AMSDPC +LA LFSIAVDFP
Sbjct: 837  LDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFP 896

Query: 1172 KTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 993
            KTGVPAEIPS LR KEYPDFMEKPDKPTY SE VIGKLF++VKD  P  SSI +FT +VA
Sbjct: 897  KTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVA 956

Query: 992  KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 813
            ++SYD D+ V GFEDY+DEAF YK+EYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 957  RKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1016

Query: 812  RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHY 633
            RKDA+A+G+AVRSLRKEAR+WFKR  D+DD  AKASAWYHVTYH TYWG YNEGL R H+
Sbjct: 1017 RKDADAIGVAVRSLRKEARTWFKRRSDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRDHF 1076

Query: 632  ISFPWCVYDKLIHIKR 585
            ISFPWC+YD+LI IK+
Sbjct: 1077 ISFPWCIYDQLIQIKK 1092


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1559 bits (4036), Expect = 0.0
 Identities = 769/1123 (68%), Positives = 906/1123 (80%), Gaps = 8/1123 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRR-AYARVQFRDNRSAE 3684
            M KTIQV+GFP ++SA+ + + LEKYTG G+I ALE+KQ + G    +A+VQF     AE
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 3683 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 3504
             II++   ++++YG +YLKA EMDLD++P+PR F+H M+R+ L+FGCQ+S  +F VLWK 
Sbjct: 61   FIITLCK-KKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119

Query: 3503 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 3324
             N SVKFG GL+K YFFLS    +YKLEL  EN+WQI L  P GQ  KFLLIQL GAP+I
Sbjct: 120  INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQI 179

Query: 3323 FKKIEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFADYFAWYKE 3147
            ++K    +  YF +  DDQWVR  DFT SC IGQS  +CLELP+G QLP F + FA+YKE
Sbjct: 180  YEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKE 239

Query: 3146 SENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2967
            ++  F+LE+G SYS++  LVPI+ PP+G  LPF ILFKI +LVQ GCL GP LD +FF+L
Sbjct: 240  NDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRL 299

Query: 2966 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2787
            ++P++F + +IE+ALE LY+LKECCYEPVRWL E ++ ++  + +  SPAISLD GLVY+
Sbjct: 300  VDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVK-KPVAGSPAISLDTGLVYV 358

Query: 2786 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2607
            RRVQ+TPCKVYFCGPEVNVSNRVLR+YPEDI NFLRVSF+DE  +K+ ST +S R S   
Sbjct: 359  RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSK-E 417

Query: 2606 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 2427
            G++T +Y RILSIL+ GI IGDKKFDFLAFSSSQLR+NS WMFASRPGL AA+IR WMGD
Sbjct: 418  GRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGD 477

Query: 2426 FSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 2247
            FS IRNVAKYAARLGQ           ++DEIE IPDI   +    Y+FSDGIGKIS + 
Sbjct: 478  FSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQL 537

Query: 2246 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 2067
            A RVAIKCG K  TPSAFQIRYGG+KGVVAVDPTSSRKLSLRKSM KY+SDN  LDVLAW
Sbjct: 538  AHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAW 597

Query: 2066 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 1887
            SKYQP FLNRQLITLLSTLGVKDHV EKKQR A+ QLD IL DP+ A EALELM+PGENT
Sbjct: 598  SKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENT 657

Query: 1886 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 1707
            N+L+E+L CGYKPD+EPFLSMML  FRA+K+L+LR K RIF+P+ RSMMGCLDET TLEY
Sbjct: 658  NVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEY 717

Query: 1706 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 1530
            G+VFVQ+SG   RQ + DS +F  + S    FILE  +VVAKNPCLHPGD+RVL AV+VP
Sbjct: 718  GEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVP 777

Query: 1529 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 1350
             LHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWDRDLIPP Q +PMDYTPAPT  L
Sbjct: 778  TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVL 837

Query: 1349 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 1170
            DH+V IEE+ EYFTNYIVNDSLGII+NAHTVFAD+E  KA  DPC ELA LFSIAVDFPK
Sbjct: 838  DHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPK 897

Query: 1169 TGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAK 990
            TGVPAEIP +LRVKEYPDFMEK DKPTY S++VIGKLFREVKD APH  +IRSFTR+VA+
Sbjct: 898  TGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVAR 957

Query: 989  RSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 810
            +SYD D+EV GFEDYV +AF YK+EYDYKLGNLMDYYGIKTE+EILSG IM+MSKSFDRR
Sbjct: 958  QSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRR 1017

Query: 809  KDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYWGVYNEGLN 645
            KDAEA+G+AV+SLRKEAR+WF + G     + DD YAKASAWYHVTYHP YWG YNEG++
Sbjct: 1018 KDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMD 1077

Query: 644  RAHYISFPWCVYDKLIHIKRENSINWNRQMSSLEREFNSGLRL 516
            R H++SFPWCVYDKLIH KR+     +  +SSLER  + GLRL
Sbjct: 1078 RDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score = 1558 bits (4033), Expect = 0.0
 Identities = 768/1100 (69%), Positives = 906/1100 (82%), Gaps = 3/1100 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQVFGFPYL+SAE V   LEKYTG G++ ALEVKQSKGG RA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II++A+ R LY+GSSYLKAWEM  D+V + R +V QM+ + LNFGCQ+S +KFAVL  + 
Sbjct: 61   IITLANNR-LYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLG-ST 117

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
              S++FGIGLKK +FFLS    DYKL+L  EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 118  EVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177

Query: 3320 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 3141
            K++E S YS+F +T DDQWVRTTDF  S IG SS +CL+   GV+LP F + F  Y E E
Sbjct: 178  KRLENSCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAERE 237

Query: 3140 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2967
            N   L+TG ++  S+   LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+  FF+L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRL 297

Query: 2966 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2787
            ++P++ +V  IE+ALE LY +KECCY+PVRWL E +  ++  ++ PKSP+I+LD+GLVY+
Sbjct: 298  VDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357

Query: 2786 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2607
            RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++STDL  ++S+GS
Sbjct: 358  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGS 417

Query: 2606 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 2427
            G +T IY RILS L++G  IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 418  GVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGD 477

Query: 2426 FSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 2247
            FS I+NVAKYAARLGQ            R EIE+IPD+     S  Y+FSDGIGKIS +F
Sbjct: 478  FSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISGDF 535

Query: 2246 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 2067
            A RVA KCGL+  TPSAFQIRYGG+KGVV VDP SS KLSLRKSM KY+SDNIKLDVL W
Sbjct: 536  AHRVASKCGLQY-TPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGW 594

Query: 2066 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 1887
            SKYQPC+LNRQLITLLSTLGVKD VLE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 595  SKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654

Query: 1886 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 1707
            NIL+ +L CGYKPD+EPFLSMML  FRASK+LDLR ++RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEY 714

Query: 1706 GQVFVQLSGACRRQLYDDSELFYENYS-DKTFILERMVVVAKNPCLHPGDIRVLKAVDVP 1530
            GQVFVQ +GA   +  DD   F  + S +  FIL+  VVVAKNPCLHPGDIRVLKAV+V 
Sbjct: 715  GQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVR 774

Query: 1529 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 1350
            ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q  PM+Y PAP++QL
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 834

Query: 1349 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 1170
            DH+VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP  AMSDPC +LA LFSIAVDFPK
Sbjct: 835  DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894

Query: 1169 TGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAK 990
            TGVPAEIPS LR KEYPDFM+KPDK +Y+SE VIGKLFR+VKD AP  SSI +FTR+VA+
Sbjct: 895  TGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVAR 954

Query: 989  RSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 810
            RSYD D+EV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDRR
Sbjct: 955  RSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR 1014

Query: 809  KDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHYI 630
            KDAEA+ +AVR+LRKEAR+WFKR  D+DD   KASAWYHVTYHPTYWG YN+GL RAH+I
Sbjct: 1015 KDAEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFI 1074

Query: 629  SFPWCVYDKLIHIKRENSIN 570
            SFPWCVYD+LI IK++ + N
Sbjct: 1075 SFPWCVYDQLIQIKKDKARN 1094


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score = 1547 bits (4006), Expect = 0.0
 Identities = 768/1101 (69%), Positives = 903/1101 (82%), Gaps = 4/1101 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQV+GFP L+SAE V   LEK+TG G++ ALEVKQSKGG RA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II++AS +RLY+GSSYLKAWEM  D+V + R +V  M+ + LNFGCQ+S +KFAVL  + 
Sbjct: 61   IINLAS-KRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVLG-ST 117

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
              S+KFGIGLKK +FFLS    DYKL+L  EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 118  EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177

Query: 3320 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 3141
            K++E S YS+F +T DDQWVRTTDF  S IG SS +CL+   GV LP F + F  Y E E
Sbjct: 178  KRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237

Query: 3140 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2967
            N   L+TG ++  S+   LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+ NFF+L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRL 297

Query: 2966 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2787
            ++PQ+ +V  IE ALE LY LKECCY+PVRWL E +  ++  ++ PKSP+I+LD+GLVY+
Sbjct: 298  VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYV 357

Query: 2786 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2607
            RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++STDL  ++S+G+
Sbjct: 358  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN 417

Query: 2606 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 2427
            G +T IY RILS L++G  IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 418  GIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGD 477

Query: 2426 FSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 2247
            FS I+NVAKYAARLGQ            R EIE+IPD+     S  Y+FSDGIGKISA+F
Sbjct: 478  FSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKVHGTS--YVFSDGIGKISADF 535

Query: 2246 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 2067
            ARRVA KCGL+  TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536  ARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEW 594

Query: 2066 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 1887
            SKYQPCFLNRQL+TLLSTLGVKD VLE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 595  SKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654

Query: 1886 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 1707
            NIL+ +L CGY PD+EPFLSMML  FRASK+LDLR ++RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEY 714

Query: 1706 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 1530
            GQVFVQ +G+  R+  +D   F  + S    FIL+  VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 715  GQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774

Query: 1529 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 1350
            ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q   M+Y PAP++QL
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834

Query: 1349 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 1170
            DH+VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP  AMSDPC +LA LFSIAVDFPK
Sbjct: 835  DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894

Query: 1169 TGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 993
            TGVPAEIPS LR KEYPDFM+K PDK TY+SE VIGKL+R+VKD AP  SS   FTR+VA
Sbjct: 895  TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 954

Query: 992  KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 813
            +RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 955  RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1014

Query: 812  RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHY 633
            RKDAEA+ +AVR+LRKEAR+WFKR  D+DD   KASAWYHVTYHPTYWG YN+GL R H+
Sbjct: 1015 RKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHF 1074

Query: 632  ISFPWCVYDKLIHIKRENSIN 570
            ISFPWCVYD+LI IK+E ++N
Sbjct: 1075 ISFPWCVYDQLIQIKKEKALN 1095


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score = 1542 bits (3993), Expect = 0.0
 Identities = 769/1101 (69%), Positives = 900/1101 (81%), Gaps = 4/1101 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQVFGFP L+SAE V   LEK+TG G+I ALEVKQSKGG RA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II++AS +RLY+GSSYLKAWEM  D+V + R +V  M+ + LNFGCQ+S +KFAVL  + 
Sbjct: 61   IINLAS-KRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLG-ST 117

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
              S+KFGIGLKK +FFLS    DYKL+L  EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 118  EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177

Query: 3320 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 3141
            K++E S YS+F +T DDQWVRTTDFT S IG SS +CL+   GV LP F + F  Y E E
Sbjct: 178  KRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237

Query: 3140 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2967
            N   L+TG ++  S+   LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+  FF+L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297

Query: 2966 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2787
            ++PQ+ +V  IE ALE LY LKECCY+PVRWL E +  ++  ++ PKSP+I+LD+GLVY+
Sbjct: 298  VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357

Query: 2786 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2607
            RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++ST+L  ++S+G+
Sbjct: 358  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGN 417

Query: 2606 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 2427
            G +T IY RILS L++G  IGDKKF+FLAFSSSQLR+NS+WMFASR GL   DIR WMGD
Sbjct: 418  GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGD 477

Query: 2426 FSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 2247
            FS I+NVAKYAARLGQ            R EIE+IPD+     S  Y+FSDGIGKISA+F
Sbjct: 478  FSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADF 535

Query: 2246 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 2067
            ARRVA KCGL+  TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536  ARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 594

Query: 2066 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 1887
            SKYQPC+LNRQL+TLLSTLGVKD VLE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 595  SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENT 654

Query: 1886 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 1707
            NIL+ +L CGY PD+EPFLSMML  FRASK+LDLR ++RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEY 714

Query: 1706 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 1530
            GQVFVQ +GA  R+  +D   F  + S    FIL+  VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 715  GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774

Query: 1529 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 1350
            ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q   M+Y PAP++QL
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834

Query: 1349 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 1170
            DH VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP  AMSDPC +LA LFSIAVDFPK
Sbjct: 835  DHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894

Query: 1169 TGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 993
            TGVPAEIPS LR KEYPDFM+K PDK TY+SE VIGKLFR+VKD AP  SSI  FTR+VA
Sbjct: 895  TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVA 954

Query: 992  KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 813
            +RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 955  RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1014

Query: 812  RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHY 633
            RKDAEA+ +AVR+LRKEAR+WFKR  D+DD   KASAWYHVTYHPTYWG YN+GL R H+
Sbjct: 1015 RKDAEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHF 1074

Query: 632  ISFPWCVYDKLIHIKRENSIN 570
            ISFPWCVYD+LI IK+E + N
Sbjct: 1075 ISFPWCVYDQLIQIKKEKARN 1095


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score = 1529 bits (3959), Expect = 0.0
 Identities = 763/1101 (69%), Positives = 897/1101 (81%), Gaps = 4/1101 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQV+GFP L+SAE V   LEK+TG G++ ALEVKQSKGG RA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II++AS +RLY+GSSYLKA EM+ D+V +   +V  M+ + LNFGCQ+S +KFAVL  + 
Sbjct: 61   IINLAS-KRLYFGSSYLKAREMETDLV-QLWEYVDHMDGITLNFGCQISDDKFAVLG-ST 117

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
              S+KFGIGLKK +FFLS    DYKL+L  EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 118  EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177

Query: 3320 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 3141
            K++E S YS+F +T DDQWVRTTDF  S IG SS +CL+   GV LP F + F  Y E E
Sbjct: 178  KRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237

Query: 3140 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2967
            N   L+TG ++  S+   LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+  FF+L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297

Query: 2966 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2787
            ++PQ+ +V  IE ALE LY LKECCY+PVRWL E +  ++  ++ PKSP+I+LD+GLVY+
Sbjct: 298  VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYV 357

Query: 2786 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2607
            RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++STDL  ++S+G+
Sbjct: 358  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN 417

Query: 2606 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 2427
            G +T IY RILS L++G  IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 418  GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGD 477

Query: 2426 FSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 2247
            FS I+NVAKYAARLGQ            R EIE+IPD+     S  Y+FSDGIGKISA+F
Sbjct: 478  FSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADF 535

Query: 2246 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 2067
            ARRVA KCGL+  TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536  ARRVASKCGLQ-HTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 594

Query: 2066 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 1887
            SKYQPC+LNRQL+TLLSTLGVKD VLE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 595  SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654

Query: 1886 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 1707
            NIL+ +L CGY PD+EPFLSMML  FRASK+LDLR K+RIFIP+ R MMGCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEY 714

Query: 1706 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 1530
            GQVFVQ +G+  R+  +D   F  + S    FIL+  VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 715  GQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774

Query: 1529 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 1350
            ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q   M+Y PAP++QL
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834

Query: 1349 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 1170
            DH+VTIEE+ EYFTNYIVNDSLGII+NAH VFADREP  AMSDPC +LA L SIAVDFPK
Sbjct: 835  DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDFPK 894

Query: 1169 TGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 993
            TGVPAEIP  LR KEYPDFM+K PDK TY+SE VIGKL+R+VKD AP  SS   FTR+VA
Sbjct: 895  TGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 954

Query: 992  KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 813
            +RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 955  RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1014

Query: 812  RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHY 633
            RKDAEA+ +AVR+LRKEAR+WFKR  D+DD   KASAWYHVTYHPTYWG YN+GL R H+
Sbjct: 1015 RKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHF 1074

Query: 632  ISFPWCVYDKLIHIKRENSIN 570
            ISFPWCVYD+LI IK+E + N
Sbjct: 1075 ISFPWCVYDQLIQIKKEKARN 1095


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1523 bits (3942), Expect = 0.0
 Identities = 761/1132 (67%), Positives = 904/1132 (79%), Gaps = 17/1132 (1%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGG-RRAYARVQFRDNRSAE 3684
            MGKTIQVFGFP  ++AEAV   LE  TG G++YAL+++  K G  R YA VQF    +A+
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAAD 60

Query: 3683 IIISIASG-RRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWK 3507
             IIS+A    +L+YG SYL A  M+ D VPRPRTF+H ME + L+FGC++S+ KFAVLW+
Sbjct: 61   TIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWR 120

Query: 3506 NANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPR 3327
              N +V FG G++KI F LS    +Y+LEL  EN+W+I LHCP  Q  K+LLIQL GAPR
Sbjct: 121  GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPR 180

Query: 3326 IFKK--------IEASVYSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKF 3174
            IF+K         E+ V+++F +  DDQWVRTTDFT S  IGQS+G+C+ELP+ ++LP F
Sbjct: 181  IFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDF 240

Query: 3173 ADYFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGP 2994
             + FA+YKESE+ FVLETG +YS S  LVPIV PP G+ LP+ ILFKI  LVQ GC+ GP
Sbjct: 241  KENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGP 300

Query: 2993 KLDANFFQLLNPQKFDVRY--IENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSP 2820
             LD+NF++L++P +  V    IE+AL+ LY+LKECCYEP RWL + ++K++  +  P SP
Sbjct: 301  LLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSP 360

Query: 2819 AISLDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFS 2640
            AISLD+GLVY+ RVQVTP +VYFCGPE+NVSNRVLRH+  DI NFLR+SFIDE+ DK+ S
Sbjct: 361  AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 420

Query: 2639 TDLSHRSSSGSG-KKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPG 2463
            TDLS R SS +   +T IY RILS L+ GI IGD+KF+FLAFSSSQLRE+S WMFASR G
Sbjct: 421  TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 480

Query: 2462 LNAADIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYI 2283
            L AA+IR WMG+F  IRNVAKYAARLGQ             DEIE+IPD+       KY+
Sbjct: 481  LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 540

Query: 2282 FSDGIGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKY 2103
            FSDGIGK+SAEFAR+VA KCGLK   PSAFQIRYGG+KGVVA DPTSS+KLSLR SM KY
Sbjct: 541  FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY 600

Query: 2102 DSDNIKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAH 1923
            +S+  KLDVLAWSKYQPCFLNRQLI+LLSTLG+ D + EKKQREA+ QLD ILTDPL+A 
Sbjct: 601  ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 660

Query: 1922 EALELMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSM 1743
            EALELM+PGENTNIL+ELL CGYKPD+EPFLSMML  FRASK+L+LR K RIFIP+ RSM
Sbjct: 661  EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 720

Query: 1742 MGCLDETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPG 1563
            MGCLDET TL YGQVFVQ+SGA  RQL+ +S LF  + S + FI++ +VVVAKNPCLHPG
Sbjct: 721  MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 780

Query: 1562 DIRVLKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASP 1383
            D+RVLKAV+VPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIPP Q  P
Sbjct: 781  DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 840

Query: 1382 MDYTPAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELA 1203
            MDYTPA +MQLDH+V IE++ EYFTNYIVNDSLGII+NAHTVFADREP KA S+PCL+LA
Sbjct: 841  MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLA 900

Query: 1202 ALFSIAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTS 1023
              FSIAVDFPKTGVPAEIP HL VKEYPDFMEKPDKPTY S+NVIGKLFR VKD APHTS
Sbjct: 901  EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTS 960

Query: 1022 SIRSFTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGG 843
             IR FT+EVA+RSYD D+EV GFED++D+A  +K  YDYKLGNLMDYYGIKTEAEIL+G 
Sbjct: 961  CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGS 1020

Query: 842  IMKMSKSFDRRKDAEAVGMAVRSLRKEARSWFKR--GGDL-DDAYAKASAWYHVTYHPTY 672
            IMKMSKSF +R+DAEA+GMAVR+LRKEAR+WFK   G D  DDAYAKASAWYHVTYHP Y
Sbjct: 1021 IMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDY 1080

Query: 671  WGVYNEGLNRAHYISFPWCVYDKLIHIKRENSINWNRQMSSLEREFNSGLRL 516
            WG YN G+NR H++SFPWCVYD+L+ IK++ +   N    +LE++F  GLR+
Sbjct: 1081 WGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGN-AFPALEQQFRQGLRM 1131


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1518 bits (3930), Expect = 0.0
 Identities = 758/1101 (68%), Positives = 889/1101 (80%), Gaps = 8/1101 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGG-RRAYARVQFRDNRSAE 3684
            MGKTIQV+G P  +SA  + + LEKYTG G+I ALE+KQ K G    +A+VQF   R AE
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60

Query: 3683 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 3504
            +IIS+A  ++L+YG +YLKA EMDLD++P+PRTF+H M+R+ L+FG Q+S+ +F VLWK 
Sbjct: 61   LIISLA--KQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA 118

Query: 3503 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 3324
             N SVKFG GL+K YFFLS    +YKLEL  EN+WQI L  P GQ+ KFLLIQL  AP+I
Sbjct: 119  INVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQI 178

Query: 3323 FKKIEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFADYFAWYKE 3147
            ++K + S  SYF +T DDQWVR  DFT SC IGQSS +CLELPHG QLP F + FA YKE
Sbjct: 179  YEK-DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKE 237

Query: 3146 SENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2967
            ++  F+LE+G S+S +  LVPIV PP+G +LPF ILFKI +LVQ GCL GP LD NFF+ 
Sbjct: 238  NDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRW 297

Query: 2966 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2787
            ++PQ+ ++ +IE+ALE LY L+ECCYEPVRWL E ++ +I+ Q +  SPAISLD GLVY+
Sbjct: 298  VDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQ-VAGSPAISLDTGLVYV 356

Query: 2786 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2607
            RRVQ+TPCKVYFCGPEVNVSNRVLR+YPEDI NFLRVSF+DE  +K+ ST +S R S+  
Sbjct: 357  RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMSN-E 415

Query: 2606 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 2427
            G++T +Y RILSIL+ GI IGDKKFDFLA SSSQLR+NS WMFASRPGL AADIR  MGD
Sbjct: 416  GRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGD 475

Query: 2426 FSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 2247
            FS IRNVAKYAARLGQ           ++ EIE+IPDI   +    Y+FSDGIGKISAE 
Sbjct: 476  FSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAEL 535

Query: 2246 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 2067
            A RVAIKCG K  TPSAFQIRYGG+KGVVAVDPTSSRKLSLRKSM KY+S+N  LDVL+W
Sbjct: 536  AHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSW 595

Query: 2066 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 1887
            SKY+PCFLNRQLITLLSTLGVKDHV EKKQREA+ QLD IL DPLRA EALELM+PGENT
Sbjct: 596  SKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENT 655

Query: 1886 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 1707
            NIL+E+L CGYKPD+EPFLSMML  FRA+K+L+LR K RIF+P+ RSMMGCLDET TLEY
Sbjct: 656  NILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEY 715

Query: 1706 GQVFVQLSGACRRQLYDDSELFYENYS-DKTFILERMVVVAKNPCLHPGDIRVLKAVDVP 1530
            G+VFVQ+SG   RQ + DS +FY + S    FILE  VVVAKNPCLHPGD+R+L AVDVP
Sbjct: 716  GEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVP 775

Query: 1529 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 1350
            ALHHMVDCVVFPQ+G RPHP+ECSGSDLDGDIYFVCWD DLIPP Q +PMDYTPAPT  L
Sbjct: 776  ALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVL 835

Query: 1349 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 1170
            DH+V IEE+ EYFTNYI ND LGII+NAHTVFAD+E  KA+  PC ELA LFSIA++FPK
Sbjct: 836  DHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPK 895

Query: 1169 TGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAK 990
            TGVPAEIP HL VKEYPDFMEK +KPTY S++VIGKLFREVKD APH   +RSFTR+VA 
Sbjct: 896  TGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAM 955

Query: 989  RSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 810
            +SYD D+EV GFEDYV +AF YK++YD+KLG+LMD  GI+TE+EILSG IMKMSKSFD+R
Sbjct: 956  QSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKR 1015

Query: 809  KDAEAVGMAVRSLRKEARSWFKRGGD-----LDDAYAKASAWYHVTYHPTYWGVYNEGLN 645
            KDAEA+ +AVRSLRKEAR+WF + G       DD YA ASAWYHVTYHP YWG YNEG+ 
Sbjct: 1016 KDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMY 1075

Query: 644  RAHYISFPWCVYDKLIHIKRE 582
              H++SFPWCVYDKLI IKR+
Sbjct: 1076 HDHFLSFPWCVYDKLIQIKRD 1096


>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao]
          Length = 1109

 Score = 1510 bits (3910), Expect = 0.0
 Identities = 757/1129 (67%), Positives = 900/1129 (79%), Gaps = 14/1129 (1%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQV  FP  + AE V   LE YTG  ++YAL+++Q K G RAYA VQF  +  AE+
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGRAYAIVQFTKSTDAEL 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II + + +RLYYGSSYLKA EM+ D+VP+PRTF+H ME + L+FGCQVS+ KF VLW+  
Sbjct: 61   IIRLTN-QRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 119

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
            + +V FG+G++K+ F LS   V+Y+L+L  EN+WQI LH P  Q++K+LLIQLFGAPRI+
Sbjct: 120  DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIY 179

Query: 3320 KK--------IEASVYSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFAD 3168
            +K         E  + +YFMD  DDQWVRTTDFTQS CIGQSS +CLELP+ +QLP F +
Sbjct: 180  EKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRE 239

Query: 3167 YFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKL 2988
             FA+YKESE  FVLE+G SYS +  LVPIV P  G+DLP+ ILFKI  LVQ GC+PGP L
Sbjct: 240  NFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPAL 299

Query: 2987 DANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISL 2808
            DANF++L+NP + D  YI++ALE LY LKECC+EP +WL+E +K +I  +K P SP ISL
Sbjct: 300  DANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISL 359

Query: 2807 DEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLS 2628
            D+GLV +RRVQ+TP +VYFCGPE+NVSNRVLRH+ +DI NFLR++F+DEE +K+ STDL 
Sbjct: 360  DDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLL 419

Query: 2627 HRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAAD 2448
             R+     + TEIYGRILS LK GI IGDK+F+FLAFSSSQLRENS WMFASR GL AAD
Sbjct: 420  TRN-----RITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAAD 474

Query: 2447 IRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGI 2268
            IR WMG+FS IRNVAKYAARLGQ           ++DEIE+I D+  ++    Y+FSDGI
Sbjct: 475  IRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDGI 534

Query: 2267 GKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNI 2088
            GKISA+FA++VA KC L   TPSAFQIR GGFKGVVAVDPTSS+KLSLR SM KY+S+N 
Sbjct: 535  GKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESENT 594

Query: 2087 KLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALEL 1908
            KLDVLAWSKYQPCFLNRQLITLLSTLGV DH  E+KQRE + QL+ ILTDPL+A EALEL
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEALEL 654

Query: 1907 MAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLD 1728
            M+PGENTNIL+E+L CGY+PD+EPFLSMML  FRASK+L+LR K+RIF+ + RSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGCLD 714

Query: 1727 ETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVL 1548
            ET TL+YGQVFVQ+SG+                S++ FI++  VVVAKNPCLHPGD+RVL
Sbjct: 715  ETRTLDYGQVFVQVSGS---------------RSEQRFIVQGKVVVAKNPCLHPGDVRVL 759

Query: 1547 KAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTP 1368
             AV+VP LHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIP  Q  PMDY+P
Sbjct: 760  TAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSP 819

Query: 1367 APTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSI 1188
            APT  L+HEVTIEE+ EYFTNYIVNDSLGII+NAHTVFADREP+KAMS  C  LA LFSI
Sbjct: 820  APTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSI 879

Query: 1187 AVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSF 1008
            AVDFPKTGVPAEIP  LRVKEYPDFMEKPDKPTY S NVIGKLFREVKD AP+   IRS 
Sbjct: 880  AVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSL 939

Query: 1007 TREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 828
            TRE  +R YD D+EV G+EDYVD+AF +K+ YDYKLGNLM+YYGIKTEAEILSGGIMKMS
Sbjct: 940  TRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKMS 999

Query: 827  KSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYWGV 663
            +SF +++DAEA+G+AVRSLRKEARSWF   G     + DD YAKASAWYHVTYHP+YWG+
Sbjct: 1000 RSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWGL 1059

Query: 662  YNEGLNRAHYISFPWCVYDKLIHIKRENSINWNRQMSSLEREFNSGLRL 516
            YNEG+NR H++SFPWCVYDKLI IK++ +   N ++SSLE  F  GLRL
Sbjct: 1060 YNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score = 1494 bits (3867), Expect = 0.0
 Identities = 746/1072 (69%), Positives = 874/1072 (81%), Gaps = 4/1072 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQV+GFP L+ AE V   LEK+TG G++ AL+VKQSKGG RA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II++AS +RLY+GSSYLKAWEM  D+V     +V  M+ + LNFGCQ+S +KFAVL  + 
Sbjct: 61   IINLAS-KRLYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLG-ST 116

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
              S+KFGIGLKKIYFFLS    DYKL+L  EN+WQ+VLH P GQ+A+FLLIQLFGAPRI+
Sbjct: 117  EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 176

Query: 3320 KKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAWYKESE 3141
            K++E S YS+F +T DDQWVRTTDF  S IG SS +CL+   GV LP F + F  Y E E
Sbjct: 177  KRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 236

Query: 3140 NPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQL 2967
            N   L+TG ++  S+   LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+  FF+L
Sbjct: 237  NNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRL 296

Query: 2966 LNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYI 2787
            ++PQ+ +V  IE ALE LY LKECCY+PVRWL E +  ++  ++ PKSP+I+LD+GLVY+
Sbjct: 297  VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 356

Query: 2786 RRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGS 2607
            RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++ST+L  ++S+G+
Sbjct: 357  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGN 416

Query: 2606 GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGD 2427
            G +T IY RILS +++G  IGDKKF+FLAFSSSQLR+NS+WMFASRPGL A DIR WMGD
Sbjct: 417  GIRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGD 476

Query: 2426 FSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAEF 2247
            FS I+NVAKYAARLGQ            R EIE+IPD+     S  Y+FSDGIGKISA+F
Sbjct: 477  FSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADF 534

Query: 2246 ARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAW 2067
            ARRVA KCGL+  TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 535  ARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 593

Query: 2066 SKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENT 1887
            SKYQPC+LNRQLITLLSTLGVKD +LE+KQ+EA+ QLD IL D L+A EALELM+PGENT
Sbjct: 594  SKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 653

Query: 1886 NILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEY 1707
            NIL+ +L CGY PD+EPFLSMML  FRASK+LDLR K+RIFIP+ R+MMGCLDE+ TLEY
Sbjct: 654  NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEY 713

Query: 1706 GQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLKAVDVP 1530
            GQVFVQ +GA  R+  +D   F  + S    FIL+  VVVAKNPCLHPGDIRVL+AVDVP
Sbjct: 714  GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 773

Query: 1529 ALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQL 1350
            ALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q  PM+Y PAP++QL
Sbjct: 774  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 833

Query: 1349 DHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPK 1170
            DH+VTIEE+ EYFTNYIVNDSLGIISNAH VFADREP  AMSDPC +LA L SIAVDFPK
Sbjct: 834  DHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPK 893

Query: 1169 TGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVA 993
            TGVPAEIPS  R KEYPDFM+K PDK TY+SE VIGKL+R+VKD AP  SS   FTR+VA
Sbjct: 894  TGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 953

Query: 992  KRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 813
            +RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 954  RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1013

Query: 812  RKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYN 657
            RKDAEA+ +AVR+LRKEAR+WFKR  D+DD   KASAWYHVTYHPTYWG YN
Sbjct: 1014 RKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYN 1065


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1493 bits (3865), Expect = 0.0
 Identities = 744/1133 (65%), Positives = 893/1133 (78%), Gaps = 18/1133 (1%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSK-GGRRAYARVQFRDNRSAE 3684
            M KT++V GFP   +A AV   LE +TG G++ AL++++ + GG R YA VQF   R+AE
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 3683 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 3504
             IIS+A+ R L+YG SYL A  MD D++P+PR+F+H ME + L+FG Q S  KF+ +W  
Sbjct: 61   QIISLANPR-LWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSG 119

Query: 3503 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 3324
             N SV FG+G++K++FFLS    +YKL LL EN+WQI LH P GQ+ K+LLIQL+GAPRI
Sbjct: 120  NNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRI 179

Query: 3323 FKK--------IEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFA 3171
            +++         E  + +YF D  D+QWVRTTDFT SC IG SS +CLELP+ +QLP F 
Sbjct: 180  YERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFN 239

Query: 3170 DYFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPK 2991
            + F +YKE+E  FVLE+G ++S +  LVPIV P  G++LP+ ILF++  LVQ GCL G  
Sbjct: 240  ENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299

Query: 2990 LDANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAIS 2811
            LD  F++L++P +  VR IE ALE LY+LKECCYEP +W  E +KK++     P+SP +S
Sbjct: 300  LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 359

Query: 2810 LDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDL 2631
            LD GLVY+ +VQ+TPCKV+FCGPEVNVSNRVLR Y EDI NFLRVSF+DEE +K+ STD+
Sbjct: 360  LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 419

Query: 2630 SHRSSSGSG-KKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNA 2454
            S R+SS +  ++T IY RILS L+ GI IGDKKF+FLAFSSSQLRENS WMFASR GL A
Sbjct: 420  SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 479

Query: 2453 ADIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSD 2274
            ADIR WMG F  IRNVA+YAARLGQ           S  EIE+IPDI   +   +Y+FSD
Sbjct: 480  ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 539

Query: 2273 GIGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSD 2094
            GIGKISAEFAR+VAIKCG K  TPSAFQIRY G+KGVVAVDPTSS+KLSLR+SM KY+S+
Sbjct: 540  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 599

Query: 2093 NIKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEAL 1914
            N KLDVLA SKYQPCFLNRQLITLLSTLGV DH  E+KQREA+ QLD +LTDPLRA EAL
Sbjct: 600  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 659

Query: 1913 ELMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGC 1734
            ELM+PGENTNIL+E+L CGY+PD+EPFLSMML  FRASK+L+LR K RIFIP+ RSMMGC
Sbjct: 660  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 719

Query: 1733 LDETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIR 1554
            LDET TLE+GQVFV+ SG+  R LYD S++F E    + ++++  VVVAKNPCLHPGD+R
Sbjct: 720  LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 779

Query: 1553 VLKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDY 1374
            +LKAVDVPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIP  Q SPMDY
Sbjct: 780  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 839

Query: 1373 TPAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALF 1194
            TP P +QLDH+VTIEE+ EYFTNYIVNDSLG+I+NAHT  AD+E  KAMS+PC+ELA  F
Sbjct: 840  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 899

Query: 1193 SIAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIR 1014
            SIAVDFPKTGVPAEIPS+LR +EYPDFMEKPDKP+Y S NVIGKLFREVKD AP TSSIR
Sbjct: 900  SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 959

Query: 1013 SFTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMK 834
            SFT +VA++ YD D+EV GFEDY+D+AF YK+ YDYKLGNLM+YYGIKTEAE+LSG  MK
Sbjct: 960  SFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1019

Query: 833  MSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYW 669
            MSKSF +++DAEA+GMAVRSL+KEARSWF   G       DD  AKASAWYHVTYH  YW
Sbjct: 1020 MSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYW 1079

Query: 668  GVYNEGLNRAHYISFPWCVYDKLIHIKRENSINWNRQ--MSSLEREFNSGLRL 516
            G YNEG+NR H++SFPWCVYDKLI IKR NS    R   + S+ER+F+ GL L
Sbjct: 1080 GCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1486 bits (3846), Expect = 0.0
 Identities = 747/1130 (66%), Positives = 879/1130 (77%), Gaps = 15/1130 (1%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQV+GF   +SA  V   LE YTG  ++YAL+++Q K   RA+A VQF  +  A +
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II +A+ +RLYYG SYLKA EM+ D+VP+PR F+H MER+ +NFGCQVS  KF VLWK  
Sbjct: 61   IIRLAN-QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD 119

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
            N ++ FG G++K+ F LS     YKLEL  EN+WQI L CP  Q++K LLIQLFGAPRI+
Sbjct: 120  NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIY 179

Query: 3320 KK--------IEASVYSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFAD 3168
            +K         +  + +YF D  DDQWVRTTDFT+S CIGQSS + LELPH +QLP F +
Sbjct: 180  EKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRE 239

Query: 3167 YFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKL 2988
             FA+YKE+E   VLE+G SYS +  LVPIV P R +DLPF ILFK+  LVQ GC+PGP L
Sbjct: 240  NFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPAL 299

Query: 2987 DANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISL 2808
            D  F++L++P +    YI++ALE LY L+ECCYEP RWL E +K     +K   SP ISL
Sbjct: 300  DDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISL 359

Query: 2807 DEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLS 2628
            DEGLVY+RRVQ+TP +VYFCGPE+NVSNRVLR +  DI NFLR+SF+DEE +K+ ST++ 
Sbjct: 360  DEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQ 419

Query: 2627 HRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAAD 2448
             R     G++T IY RILS L+ GI IG+K+F+FLAFSSSQLRENS WMFASR GL AAD
Sbjct: 420  AR-----GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAAD 474

Query: 2447 IRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGI 2268
            IR WMG+FS IRNVAKYAARLGQ           S+DEI +IPDI   +   KY+FSDGI
Sbjct: 475  IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGI 534

Query: 2267 GKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNI 2088
            GKISAEFA++VA KC LK CTPSAFQIR GGFKGVVA+DPTSS KLSLRKSM KY+S+N 
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594

Query: 2087 KLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALEL 1908
            KLDVLAWSKYQPCFLNRQLITLLSTLGV D   EKKQRE + QL+ +LTDPL A EALEL
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALEL 654

Query: 1907 MAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLD 1728
            M+PGENTNIL+E+L CGYKPD+EPFLSMML  FRASK+L+LR KARIF+   RSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714

Query: 1727 ETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVL 1548
            ET TL YGQVFVQ SG+                S++ FI++  V+VAKNPCLHPGD+RVL
Sbjct: 715  ETRTLNYGQVFVQFSGS---------------RSERRFIVQGKVIVAKNPCLHPGDVRVL 759

Query: 1547 KAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTP 1368
            +AV+VP LHHMVDCVVFPQ+G RPHPNECSGSDLDGD+YFVCWD +LIP  Q  PMDY+P
Sbjct: 760  RAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSP 819

Query: 1367 APTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSI 1188
            A T +LDHEVTIEEI EYFTNYIVNDSLGIISNAHT FADREP KAMS PCLELA LFSI
Sbjct: 820  ASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSI 879

Query: 1187 AVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSF 1008
            AVDFPKTGVPAEIP  LRVKEYPDFMEKPDKP+Y S NVIGKLFREVK+ AP+  SI+  
Sbjct: 880  AVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFL 939

Query: 1007 TREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 828
            TRE  +R YD D+EV GFEDY+D+AF +K++YDYKLGNLMDYYG+KTEAEIL GGIMKMS
Sbjct: 940  TREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMS 999

Query: 827  KSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYWGV 663
            +SF +++DAEA+ MAVRSLRKEARSWF   G     ++DDAYAKASAWY+VTYHP+YWG 
Sbjct: 1000 RSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQ 1059

Query: 662  YNEGLNRAHYISFPWCVYDKLIHIKREN-SINWNRQMSSLEREFNSGLRL 516
            YNEG+NR H++SFPWCVYDKLI IK+E  ++     +SSLE  F  GL L
Sbjct: 1060 YNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1477 bits (3824), Expect = 0.0
 Identities = 743/1130 (65%), Positives = 876/1130 (77%), Gaps = 15/1130 (1%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQV+GF   +SA  V   LE YTG  ++YAL+++Q K   RA+A VQF  +  A +
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            II +A+ +RLYYG SYLKA EM+ D+VP+PR F+H MER+ +NF C VS  KF VLWK  
Sbjct: 61   IIRLAN-QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD 119

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
            N ++ FG G++K+ F LS     YKLEL  EN+WQI L CP  Q++K LLIQLFGAPRI+
Sbjct: 120  NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIY 179

Query: 3320 KK--------IEASVYSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFAD 3168
            +K         +  + +YF D  DDQWVRTTDFT+S CIGQSS +CLELPH +QLP F +
Sbjct: 180  EKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRE 239

Query: 3167 YFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKL 2988
             FA+YKE+E   VLE+G SYS +  LVPIV P R +DLPF ILFK+  LVQ GC+PGP L
Sbjct: 240  NFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPAL 299

Query: 2987 DANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISL 2808
            D  F++L++P +    YI++ALE LY L+ECCYEP RWL E +K     +K   SP ISL
Sbjct: 300  DDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISL 359

Query: 2807 DEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLS 2628
            DEGLVY+RRVQ+TP +VYFCGPE+NVSNRVLR +  DI NFLR+SF+DEE +K+ ST++ 
Sbjct: 360  DEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQ 419

Query: 2627 HRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAAD 2448
             R     G++T IY RILS L+ GI IG+K+F+FLAFSSSQLRENS WMFASR GL AAD
Sbjct: 420  AR-----GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAAD 474

Query: 2447 IRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGI 2268
            IR WMG+FS IRNVAKYAARLGQ           S+DEI +IPDI   +   KY+F DGI
Sbjct: 475  IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGI 534

Query: 2267 GKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNI 2088
            GKISAEFA++VA KC LK CTPSAFQIR GGFKGVVA+DPTSS KLSLRKSM KY+S+N 
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594

Query: 2087 KLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALEL 1908
            KLDVLAWSKYQPCFLNRQLITLLSTLGV D+  EKKQRE + QL+ +LTDPL A EALEL
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALEL 654

Query: 1907 MAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLD 1728
            M+PGENTNIL+E+L CGYKPD+EPFLSMML  FRASK+L+LR KARIF+   RSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714

Query: 1727 ETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVL 1548
            ET TL YGQVFVQ SG+                S++ FI++  V+VAKNPCLHPGD+RVL
Sbjct: 715  ETRTLNYGQVFVQFSGS---------------RSERRFIVQGKVIVAKNPCLHPGDVRVL 759

Query: 1547 KAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTP 1368
            +AV+VP LHHMVDCVVFPQ+G RPHPNECSGSDLDGD+YFVCWD +LIP  Q  PMDY+P
Sbjct: 760  RAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSP 819

Query: 1367 APTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSI 1188
            A T +LDHEVTIEEI EYFTNYIVNDSLGIISNAHT FADREP KAMS PCLELA LFSI
Sbjct: 820  ASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSI 879

Query: 1187 AVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSF 1008
            AVDFPKTGVPAEIP  LRVKE+PDFMEKPDKP+Y S NVIGKLFREVK+ AP+  SI+  
Sbjct: 880  AVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLL 939

Query: 1007 TREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 828
            TRE  KR YD D+EV GF DY+D+AF YK++YDYKLGNLMDYYG+KTEAEILSGGIMKMS
Sbjct: 940  TREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMS 999

Query: 827  KSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----DLDDAYAKASAWYHVTYHPTYWGV 663
            +SF +++DAE++ MAVRSLRKEARSWF   G     ++DDAYAKASAWY+VTYH +YWG 
Sbjct: 1000 RSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQ 1059

Query: 662  YNEGLNRAHYISFPWCVYDKLIHIKREN-SINWNRQMSSLEREFNSGLRL 516
            YNEG+NR H++SFPWCVYDKLI IK+E  ++     +SSLE  F  G  L
Sbjct: 1060 YNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score = 1439 bits (3726), Expect = 0.0
 Identities = 728/1106 (65%), Positives = 860/1106 (77%), Gaps = 4/1106 (0%)
 Frame = -3

Query: 3875 LIFCLMGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDN 3696
            L F  MGKTIQV+GFP L+SAE V   LEK+TG G++ ALEVKQSKGG RA+A+VQF DN
Sbjct: 66   LEFGYMGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDN 125

Query: 3695 RSAEIIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAV 3516
             SA+ II++AS +RLY+GSSYLKAWE++ D+V +   +V  M+ + LNFGCQ+S +KFAV
Sbjct: 126  ISADKIINLAS-KRLYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAV 183

Query: 3515 LWKNANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFG 3336
            L                                      ++VLH P GQ+A+FLLIQLFG
Sbjct: 184  LGST-----------------------------------EVVLHRPYGQNAQFLLIQLFG 208

Query: 3335 APRIFKKIEASVYSYFMDTQDDQWVRTTDFTQSCIGQSSGICLELPHGVQLPKFADYFAW 3156
            APRI+K++E S YS+F +T DDQWVRTTDFT S IG SS +CL+   GV LP F + F  
Sbjct: 209  APRIYKRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFH 268

Query: 3155 YKESENPFVLETGPSYSYSR--VLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDA 2982
            Y E EN   L+TG ++  S+   LVP V PP G+ +P+ ILFKI SLVQ GC+PGP L+ 
Sbjct: 269  YAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNV 328

Query: 2981 NFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDE 2802
             FF+L++PQ+ +V  IE ALE LY LKECCY+PVRWL E +  +   ++ PKSP+I+LD+
Sbjct: 329  YFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDD 388

Query: 2801 GLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHR 2622
            GLVY+RRV VTPCKVYFCGPEVNVSNRVLR+Y EDI NFLRVSF+DEEW+K++ST+L  +
Sbjct: 389  GLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPK 448

Query: 2621 SSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIR 2442
            +S+G+G +T IY RILS L++G  IGDKKF+FLAFSSSQLR+NS+WMFASR GL A DIR
Sbjct: 449  ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIR 508

Query: 2441 GWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGK 2262
             WMGDFS I+NVAKYAAR GQ            R EIE+IPD+     S  Y+FSDGIGK
Sbjct: 509  SWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGK 566

Query: 2261 ISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKL 2082
            ISA+FAR+VA  CGL+  TPSAFQIRYGG+KGVVAVDP SS KLSLRKSM KY+SDN KL
Sbjct: 567  ISADFARKVASNCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKL 625

Query: 2081 DVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMA 1902
            DVL WSKYQPC+LNRQL+TLLSTLGVKD VLE+KQ+EA+ QLD IL D L+A EALELM+
Sbjct: 626  DVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMS 685

Query: 1901 PGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDET 1722
            PGENTNIL+ +L CGY PD+EPFLSMML  FRASK+LDLR K+RIFIP+ R+MMGCLDE+
Sbjct: 686  PGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDES 745

Query: 1721 NTLEYGQVFVQLSGACRRQLYDDSELFYENYSDK-TFILERMVVVAKNPCLHPGDIRVLK 1545
             TLEYGQVFVQ +GA  R+  +D   F  + S    FIL+  VVVAKNPCLHPGDIRVL+
Sbjct: 746  RTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLR 805

Query: 1544 AVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPA 1365
            AVDVPALHHMVDCVVFPQ+G+RPHPNECSGSDLDGDIYFVCWD+D+IPP Q   M++ P 
Sbjct: 806  AVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPP 865

Query: 1364 PTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIA 1185
            P++QLDH+VTIEE+ EYFTNYIVND LGII+NAH VFADREP  AM              
Sbjct: 866  PSIQLDHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFADREPDMAM-------------- 911

Query: 1184 VDFPKTGVPAEIPSHLRVKEYPDFMEK-PDKPTYVSENVIGKLFREVKDHAPHTSSIRSF 1008
            +DFPKTGVPAEIPS LR KEYPDFM+K PDK TY+SE VIGKLFR+VKD AP  SSI  F
Sbjct: 912  MDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIF 971

Query: 1007 TREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 828
            TR+ A+RSYD DLEV GFEDY+DEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK S
Sbjct: 972  TRDDARRSYDTDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTS 1031

Query: 827  KSFDRRKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGL 648
            K+FDRRKDAEA+ +AVR+LRKEAR+WFKR  D+DD   KASAWYHVTYHPTYWG YN+GL
Sbjct: 1032 KTFDRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGL 1091

Query: 647  NRAHYISFPWCVYDKLIHIKRENSIN 570
             R H+ISFPWCVYD+LI IK+E + N
Sbjct: 1092 KRDHFISFPWCVYDQLIQIKKEKARN 1117


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 1437 bits (3721), Expect = 0.0
 Identities = 719/1133 (63%), Positives = 881/1133 (77%), Gaps = 18/1133 (1%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSK-GGRRAYARVQFRDNRSAE 3684
            MGKTIQ+ GFP  +SAE+V + LE +TG G++YA++++ +K GG R+YA VQF    +AE
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60

Query: 3683 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 3504
            +II +A+ R L+YG SYL A  M+ D+VP+PR  ++ ++ + L+FGCQ+S  KF+ LW+ 
Sbjct: 61   LIIRLANPR-LWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRV 119

Query: 3503 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 3324
             N SV FG+GL+++ F+L+   V+Y+L+LL ENVWQI LH P GQ+AK+LLIQL GAPR+
Sbjct: 120  GNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 179

Query: 3323 FKK--------IEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFA 3171
            ++K        +E  +++YF DT DDQWVR TDFT+SC IG SS + LELP+GV LP   
Sbjct: 180  YEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLR 239

Query: 3170 DYFAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPK 2991
            + F +YKESE  F+LE+G S+S +  LVPIV PP G++LPF  +FKI  L+Q GCL GP 
Sbjct: 240  ENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPT 299

Query: 2990 LDANFFQLLNPQKF-DVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAI 2814
            LD +F++L++PQ+  +V  I  ALE L+NLKEC YEP  WL E ++K++   + PK PAI
Sbjct: 300  LDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAI 359

Query: 2813 SLDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTD 2634
            +LD GLVY+RRVQVTP KVYFCGPE+NVSNRVLR Y + I  FLRVSF+DEE +K+FSTD
Sbjct: 360  ALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTD 419

Query: 2633 LSHRSSSGS-GKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLN 2457
            LS R+S+ +  ++T IY RILS+L+ GI IGD+KF+FLAFSSSQLR+NSLWMFA+  G +
Sbjct: 420  LSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHS 479

Query: 2456 AADIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFS 2277
            A  IR W+GDF  IRNVAKYAARLGQ              E E+I DI   + + KY+FS
Sbjct: 480  ADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFS 539

Query: 2276 DGIGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDS 2097
            DGIGKIS+ FA+RVA KCGLK C PSAFQIRY G+KGVVAVDPTSS KLSLRKSM KY+S
Sbjct: 540  DGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYES 599

Query: 2096 DNIKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEA 1917
            +  KLDVLA+SK Q C+LNRQLITLLSTLGV D V EKKQREA+ QL+ IL DPLRA EA
Sbjct: 600  ELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREA 659

Query: 1916 LELMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMG 1737
            L+LM+ GE TNIL+ELL CGY+P++EPFLSMML AFRASK+ +LR K RI IP  R+MMG
Sbjct: 660  LDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMG 719

Query: 1736 CLDETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDI 1557
            CLDE  TLEYG+VFVQ SG   R  ++DS +     S + +I+   VVVAKNPCLHPGD+
Sbjct: 720  CLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGDV 779

Query: 1556 RVLKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMD 1377
            RVL+AV+VPALHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIP  Q  PMD
Sbjct: 780  RVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMD 839

Query: 1376 YTPAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAAL 1197
            Y+PAPT +LDH+V IEE+ EYFTNYIVNDSLGII+NAHT FAD+EP KAMS  C+ELA L
Sbjct: 840  YSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARL 899

Query: 1196 FSIAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSI 1017
            FSIAVDFPKTGVPA IP  L VKEYPDFMEK +KPTY S+NVIGKLFREVKD AP+  S+
Sbjct: 900  FSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSL 959

Query: 1016 RSFTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIM 837
              FT+EVA RSYD D+E  GFEDY+D+AF YK+ YDYKLGNL+DYYGIK+EAEI+ G IM
Sbjct: 960  HFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIM 1019

Query: 836  KMSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGD-----LDDAYAKASAWYHVTYHPTY 672
            +MSKSF +R+DAE++ MAVR+LRKEAR+WF   G       DD YAKASAWY+VTYH +Y
Sbjct: 1020 RMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSY 1079

Query: 671  WGVYNEGLNRAHYISFPWCVYDKLIHIKREN-SINWNRQMSSLEREFNSGLRL 516
            WG YNEG+NR HY+SFPWCVYDKL+ IKR   S+  + QMSSLER F+  L L
Sbjct: 1080 WGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132


>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
          Length = 1095

 Score = 1434 bits (3713), Expect = 0.0
 Identities = 710/1095 (64%), Positives = 862/1095 (78%), Gaps = 1/1095 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MG T+ +FGFP  + A++V QL+E+YTG G++ AL+V+ SK G RAYA VQF D RSAE+
Sbjct: 1    MGLTVMIFGFPSRVPADSVKQLVERYTGQGTVVALKVEASKSGPRAYAVVQFLDARSAEM 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            I+   +   LYYGSSYLK    D ++V  P T +  ++++ L+FGCQ+S NKF+VLW  +
Sbjct: 61   IVHAQNS--LYYGSSYLKVRYSDKELVRNPATNLQLIDQVTLHFGCQISGNKFSVLWSCS 118

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
            + +VKFG  LK I F L     +Y L+L  +++W+ VL+ P     K LLIQLFGAPRI 
Sbjct: 119  DVTVKFGTQLKTISFILFDGLYNYMLQLSYKSIWKTVLYNPSSGRRK-LLIQLFGAPRIS 177

Query: 3320 KKIEASVYSYFMDTQDDQWVRTTDFTQSC-IGQSSGICLELPHGVQLPKFADYFAWYKES 3144
            KK+E S YSY+    +DQWVRTTDFT++  IGQSSG+CLE PHG +LP+F D F ++KE 
Sbjct: 178  KKVEGSPYSYYNVYTEDQWVRTTDFTRAALIGQSSGLCLEFPHGSRLPRFRDDFVYFKEK 237

Query: 3143 ENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLDANFFQLL 2964
            E  F L+ G S+S + VL PIV PPRGL LP+ I+FKICSLVQ GC+PGP+LDANF++++
Sbjct: 238  EEEFHLQEGYSFSQNSVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELDANFYRMV 297

Query: 2963 NPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLDEGLVYIR 2784
            NPQ  D+RYIE+ALE ++ LKECCY+PV+WL   ++++   +  P SP ISL+ GLVY+R
Sbjct: 298  NPQLVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQTSK--PSSPTISLEGGLVYVR 355

Query: 2783 RVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSHRSSSGSG 2604
            RVQ+TP +VYF GPE+NVSNRVLR Y + I +FLRVSF+DE+WDK+FS  LS ++  G  
Sbjct: 356  RVQITPSRVYFTGPEINVSNRVLRQYKDRIDDFLRVSFVDEDWDKLFSLTLSSKTEIG-- 413

Query: 2603 KKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADIRGWMGDF 2424
             KT IY RILS+L+EGI IGDK+FDFLAFSSSQLRENSLWMFA   G+ A DIR WMGDF
Sbjct: 414  -KTRIYERILSVLREGIRIGDKRFDFLAFSSSQLRENSLWMFAPSNGVTADDIRKWMGDF 472

Query: 2423 SGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIGKISAEFA 2244
              IRNVAKYAARLGQ            RDE  +IPDI  +     Y FSDGIGKISA+FA
Sbjct: 473  RSIRNVAKYAARLGQSFGSSTETLTVQRDEYLLIPDITRQTGDKTYTFSDGIGKISADFA 532

Query: 2243 RRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIKLDVLAWS 2064
            RRVA KC      PSAFQIRYGGFKGVVAVDP+S+ KLSLR SM KY+SDN KLDVL+WS
Sbjct: 533  RRVAAKCRFTHRVPSAFQIRYGGFKGVVAVDPSSNMKLSLRPSMKKYESDNTKLDVLSWS 592

Query: 2063 KYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELMAPGENTN 1884
            KY PCFLNRQ+ITLLSTLGV+D V  KKQREA++QLD+IL DPLRA E L+LMAPGEN++
Sbjct: 593  KYLPCFLNRQIITLLSTLGVEDRVFLKKQREAVAQLDEILVDPLRAQEVLDLMAPGENSH 652

Query: 1883 ILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDETNTLEYG 1704
            IL+E+LKCGYKPD EPFLSMML AFR+SK+LDLR K+RIF+P AR +MGCLDET TLEYG
Sbjct: 653  ILKEMLKCGYKPDEEPFLSMMLRAFRSSKLLDLRTKSRIFVPEARQLMGCLDETGTLEYG 712

Query: 1703 QVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVLKAVDVPAL 1524
            +VFVQ+SG+ +RQ + D        +D   ++   V VAKNPCLHPGDIRV+KAVDVP L
Sbjct: 713  EVFVQISGSRQRQFFFDGPA-VGTVNDYNSVVSGTVFVAKNPCLHPGDIRVVKAVDVPIL 771

Query: 1523 HHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPAPTMQLDH 1344
            HHMVDC+VFPQ+G RP P+ECSGSDLDGDIYFVCWD DL P  Q  PMDY PAPT +LDH
Sbjct: 772  HHMVDCLVFPQKGHRPLPDECSGSDLDGDIYFVCWDTDLFPLQQDPPMDYDPAPTTRLDH 831

Query: 1343 EVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIAVDFPKTG 1164
            +VT++E+ +YFT+YIVND+LG+I+NAHT FADRE  KA S PCLELA LFS+AVDFPKTG
Sbjct: 832  DVTMQEVQKYFTDYIVNDTLGVIANAHTAFADRERAKARSPPCLELAKLFSVAVDFPKTG 891

Query: 1163 VPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFTREVAKRS 984
            VPA IP +LRVKE+PDFMEK D+ +Y SENV+GKL+REV+D  P   SI +FTR+VA+RS
Sbjct: 892  VPANIPYNLRVKEFPDFMEKSDRVSYQSENVLGKLYREVRDIEP--LSITAFTRDVAERS 949

Query: 983  YDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRRKD 804
            YD DLE+PG+EDYV+EA  YK EYDYKLGNLMDYYG+KTEAE+L+GGI+KMSK+FDRRKD
Sbjct: 950  YDPDLEIPGYEDYVEEAHSYKDEYDYKLGNLMDYYGVKTEAEMLTGGILKMSKTFDRRKD 1009

Query: 803  AEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEGLNRAHYISF 624
            AEAV  AVR+LR EARSWF+   + DDAYAKASAWYHVTYHP YWG YNEGL R H+ISF
Sbjct: 1010 AEAVADAVRALRNEARSWFR--AEDDDAYAKASAWYHVTYHPDYWGCYNEGLRRDHFISF 1067

Query: 623  PWCVYDKLIHIKREN 579
            PWCV+DKLI IKR++
Sbjct: 1068 PWCVHDKLIKIKRDS 1082


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score = 1431 bits (3703), Expect = 0.0
 Identities = 718/1113 (64%), Positives = 855/1113 (76%), Gaps = 12/1113 (1%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSK-GGRRAYARVQFRDNRSAE 3684
            MGKTIQVFGFP  ++ + V   LE+ TG+G++YA++V+Q K GG R +A VQF   R A 
Sbjct: 1    MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGGPRVFAIVQFTSERHAR 60

Query: 3683 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 3504
            +II++A+  RLYYG SYLKA+EM+ D+VP+PR  +H +  L + FGCQVS  K   LW  
Sbjct: 61   LIITMAA-ERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWSA 119

Query: 3503 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 3324
             N  V FG G++K++F +S    DY+LEL  EN+WQI LH P G S+KFL+IQ+ GAP+I
Sbjct: 120  HNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPKI 179

Query: 3323 FKKIEASV------YSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFADY 3165
            F+K +  V        ++ D  D+QW+RTTDFT S CIGQS+  CLELP  V +P F + 
Sbjct: 180  FEKEDQPVNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPDFREN 239

Query: 3164 FAWYKESE-NPFVLETGPSYSYS-RVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPK 2991
            FA Y E   + F++++G SYS +   LVP+V PP G DLPF ILFK+ +LVQ  CLPGP 
Sbjct: 240  FANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACLPGPA 299

Query: 2990 LDANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAIS 2811
            LD  F+QLLNP+K+D   I+++LE L++L ECCYEP RWL E +KK  + +K+P SP IS
Sbjct: 300  LDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLPLSPTIS 359

Query: 2810 LDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDL 2631
            LD+GLVYI RV VTP +VYF GPEVNVSNRVLRHY E I NFLR+SF+DE+ +K+ S DL
Sbjct: 360  LDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIHSMDL 419

Query: 2630 SHRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAA 2451
            S RSS+   ++T++Y RI S+L++GI IGDKKF+FLAFSSSQLRENS WMFA R  L AA
Sbjct: 420  SPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPRDRLTAA 477

Query: 2450 DIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDG 2271
             IR WMGDF  IRNVAKYAARLGQ             DEIE+IPD+       +Y+FSDG
Sbjct: 478  HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTRYVFSDG 537

Query: 2270 IGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDN 2091
            IGKISAEFAR+VA KCGL   +PSAFQIRYGG+KGVVAVDP SS+KLSLRKSM K++S N
Sbjct: 538  IGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESGN 597

Query: 2090 IKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALE 1911
             KLDVLAWSKYQPC+LNRQ+ITLLSTLGVKD+V EKKQRE + +LD ILTDPL AHEAL 
Sbjct: 598  TKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPLEAHEALG 657

Query: 1910 LMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCL 1731
            LMAPGENTNIL++LL CGYKPD+EPFLSMML  FRASK+L+LR K RIFIP  RSMMGCL
Sbjct: 658  LMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGGRSMMGCL 717

Query: 1730 DETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRV 1551
            DET TLEYGQV VQ S                    K +I+   VVVAKNPCLHPGD+RV
Sbjct: 718  DETRTLEYGQVVVQYSNP--------------TMPGKRYIITGPVVVAKNPCLHPGDVRV 763

Query: 1550 LKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYT 1371
            L+AV+VPAL+HMVDCVVFPQ+G RPHPNECSGSDLDGDIYF+CWD +LIPP  + PMDYT
Sbjct: 764  LQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSEPMDYT 823

Query: 1370 PAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFS 1191
            P P   LDH+VTIEE+ EYF NYIVNDSLGII+NAHT FAD+EP KA SDPC+ELA  FS
Sbjct: 824  PEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFS 883

Query: 1190 IAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRS 1011
            IAVDFPKTG+ AEIP HL VKEYPDFM+KPDKPTY S+NVIGKLFREVK+ AP   SIRS
Sbjct: 884  IAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERAPPLISIRS 943

Query: 1010 FTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKM 831
            FT +VA +SYD D+EV GFE+Y+DEAF +K  YDY+LGNLMDYYGIKTEAEILSGGIM+M
Sbjct: 944  FTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEILSGGIMRM 1003

Query: 830  SKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGDLD--DAYAKASAWYHVTYHPTYWGVYN 657
            SKSF +R+DAE++G AVR+LRKEA SWF    D +  D  AKASAWYHVTYH +YWGVYN
Sbjct: 1004 SKSFTKRRDAESIGRAVRALRKEALSWFNNAEDKNDFDESAKASAWYHVTYHSSYWGVYN 1063

Query: 656  EGLNRAHYISFPWCVYDKLIHIKRENSINWNRQ 558
            EGLNR H++SF WCVYDKL+ IK+ N     RQ
Sbjct: 1064 EGLNRDHFLSFAWCVYDKLVRIKKANVGRRQRQ 1096


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score = 1417 bits (3667), Expect = 0.0
 Identities = 715/1117 (64%), Positives = 861/1117 (77%), Gaps = 10/1117 (0%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQ-SKGGRRAYARVQFRDNRSAE 3684
            MGKTIQVFGFP  +SAE V + LE+ TG+G++YA++V+Q  KGG R +A VQF + R A 
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60

Query: 3683 IIISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKN 3504
             II+ A+ RRLYYG SYL A+E+D D+VP+PR  +H +  L + FGCQVS+ KF  LW  
Sbjct: 61   QIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120

Query: 3503 ANTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRI 3324
             +  V FGIG++K++F  S    DY+LEL  EN+WQI LH P G+S+KFL+IQ+ GAP+I
Sbjct: 121  QDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKI 180

Query: 3323 FKKIEASV------YSYFMDTQDDQWVRTTDFTQS-CIGQSSGICLELPHGVQLPKFADY 3165
            F+K +  +        ++ D  D+QW+RTTDFT S CIGQS+  CLELP  + +P F + 
Sbjct: 181  FEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFREN 240

Query: 3164 FAWYKESE-NPFVLETGPSYSYS-RVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPK 2991
            FA Y E   +PF++E+G SYS +   LVP+V PP G DLPF ILFK+ +LVQ  CLPGP 
Sbjct: 241  FANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPA 300

Query: 2990 LDANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAIS 2811
            LD + +QLLNP+K++   I++ LE L++L E CYEP RWL + +K+  +  K+P SP IS
Sbjct: 301  LDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPLSPTIS 360

Query: 2810 LDEGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDL 2631
            LD+GLVY+ RVQVTP +VYF GPEVNVSNRVLRHY + I NFLRVSF+DE+ +K+ S DL
Sbjct: 361  LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDL 420

Query: 2630 SHRSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAA 2451
            S RSS+   ++T++Y RI S+L++GI IGDKKF+FLAFSSSQLRENS WMFA   GL +A
Sbjct: 421  SPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSA 478

Query: 2450 DIRGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDG 2271
             IR WMGDF  IRNVAKYAARLGQ             DEIE+IPD+       +Y+FSDG
Sbjct: 479  HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDG 538

Query: 2270 IGKISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDN 2091
            IGKISAEFARRVA KCGL   +PSAFQIRYGG+KGVVAVDP SS+KLSLRKSM K++S+N
Sbjct: 539  IGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESEN 598

Query: 2090 IKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALE 1911
             KLDVLAWSKYQPC++NRQLITLLSTLGVKD V +KKQRE + +LD ILTDPL AHEAL 
Sbjct: 599  TKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHEALG 658

Query: 1910 LMAPGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCL 1731
            LMAPGENTNIL+ L+ CGYKPD+EPFLSMML  FRASK+L+LR K RIFI   RSMMGCL
Sbjct: 659  LMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCL 718

Query: 1730 DETNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRV 1551
            DET TLEYGQV VQ S   R                + FI+   VVVAKNPCLHPGD+RV
Sbjct: 719  DETRTLEYGQVVVQYSDPMR--------------PGRRFIITGPVVVAKNPCLHPGDVRV 764

Query: 1550 LKAVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYT 1371
            L+AV+VPAL+HMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD++LIPP  + PMDYT
Sbjct: 765  LEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDYT 824

Query: 1370 PAPTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFS 1191
            P P   LDH+VTIEE+ EYF NYIVNDSLGII+NAHT FAD+EP KA SDPC+ELA  FS
Sbjct: 825  PEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFS 884

Query: 1190 IAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRS 1011
            +AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTY S+NVIGKLFREVK+ AP   SI+S
Sbjct: 885  VAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS 944

Query: 1010 FTREVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKM 831
            FT +VA +SYD D+EV GFE+YVDEAF YK  YD+KLGNLMDYYGIKTEAEILSGGIM+M
Sbjct: 945  FTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRM 1004

Query: 830  SKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGDLDDAYAKASAWYHVTYHPTYWGVYNEG 651
            SKSF +R+DAE++G AVR+LRKE  S F    + +++ AKASAWYHVTYH +YWG+YNEG
Sbjct: 1005 SKSFTKRRDAESIGRAVRALRKETLSLFNATEEENES-AKASAWYHVTYHSSYWGLYNEG 1063

Query: 650  LNRAHYISFPWCVYDKLIHIKRENSINWNRQMSSLER 540
            LNR H++ F WCVYDKL+ IK+ N+    RQ  +LER
Sbjct: 1064 LNRDHFLIFAWCVYDKLVRIKKTNAGRRQRQ-ETLER 1099


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score = 1416 bits (3666), Expect = 0.0
 Identities = 721/1128 (63%), Positives = 867/1128 (76%), Gaps = 14/1128 (1%)
 Frame = -3

Query: 3860 MGKTIQVFGFPYLISAEAVIQLLEKYTGNGSIYALEVKQSKGGRRAYARVQFRDNRSAEI 3681
            MGKTIQ+ GFP   +AE + + LEK+TG GS++AL+++ +K G R YA +QF+    AE 
Sbjct: 1    MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGGRFYAIIQFQSISQAEK 60

Query: 3680 IISIASGRRLYYGSSYLKAWEMDLDMVPRPRTFVHQMERLVLNFGCQVSSNKFAVLWKNA 3501
            IIS+A+ R L+YG SYL A     D+VP+PRTF+H +  LVL+ GCQV+ +KF+VLW  A
Sbjct: 61   IISLANAR-LWYGRSYLNARPAH-DIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGTA 118

Query: 3500 NTSVKFGIGLKKIYFFLSVAHVDYKLELLNENVWQIVLHCPPGQSAKFLLIQLFGAPRIF 3321
              SV FG G++ + F L      Y+L+L  EN+WQI LH   G+SAK+L+IQL+G PRI+
Sbjct: 119  EVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIY 178

Query: 3320 KKIEASV-------YSYFMDTQDDQWVRTTDFTQ-SCIGQSSGICLELPHGVQLPKFADY 3165
            ++   S         +YF D  D  WVRTTDFT  SCIGQSS +CL L    +LP F + 
Sbjct: 179  QQEVCSSGGNGYEDMNYFRDPDD--WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEEN 236

Query: 3164 FAWYKESENPFVLETGPSYSYSRVLVPIVHPPRGLDLPFGILFKICSLVQTGCLPGPKLD 2985
            FA+YK+++  F+LE G ++S +R LVPIV  P G+DLP+ ILFKI  LVQ GCL GP LD
Sbjct: 237  FAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLD 296

Query: 2984 ANFFQLLNPQKFDVRYIENALENLYNLKECCYEPVRWLIEHFKKHINLQKMPKSPAISLD 2805
             NF++L++P++     IE AL+ L NLKE CYEP  WL E ++K++  +K PK   ISLD
Sbjct: 297  NNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALISLD 356

Query: 2804 EGLVYIRRVQVTPCKVYFCGPEVNVSNRVLRHYPEDIGNFLRVSFIDEEWDKMFSTDLSH 2625
             GLVY+RRVQ+TP KVYF GPEVNVSNR+LR Y  DI NFLRVSF+DEE +K++STDLS 
Sbjct: 357  SGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLSP 416

Query: 2624 RSSSGSGKKTEIYGRILSILKEGISIGDKKFDFLAFSSSQLRENSLWMFASRPGLNAADI 2445
            R+S+   +KT IY R+LS+L++GI +G KKF+FLAFSSSQLRENSLWMFA     +A  I
Sbjct: 417  RTST---RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSADTI 473

Query: 2444 RGWMGDFSGIRNVAKYAARLGQXXXXXXXXXXXSRDEIEMIPDIVGRQASGKYIFSDGIG 2265
            R  MGDF  IRNVAKYAARLGQ            R+E+E+IPD+       KY+FSDGIG
Sbjct: 474  RAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDGIG 533

Query: 2264 KISAEFARRVAIKCGLKICTPSAFQIRYGGFKGVVAVDPTSSRKLSLRKSMMKYDSDNIK 2085
            KISA+FA RVA KCG K  TPSAFQIRYGG+KGVVAVDPTSS KLSLRKSM KY+S+N K
Sbjct: 534  KISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYESENTK 593

Query: 2084 LDVLAWSKYQPCFLNRQLITLLSTLGVKDHVLEKKQREAISQLDKILTDPLRAHEALELM 1905
            LDVLA SKYQPCFLNRQLITLLSTL V+DHV  KKQR A+ QL+ ILTDPL+A EAL+LM
Sbjct: 594  LDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLM 653

Query: 1904 APGENTNILRELLKCGYKPDSEPFLSMMLHAFRASKMLDLRLKARIFIPSARSMMGCLDE 1725
            + GE+TN+L+ELL CGYKP+ EPFLSMML  FRASK+L+LR K RIFIP  R+MMGCLDE
Sbjct: 654  SAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDE 713

Query: 1724 TNTLEYGQVFVQLSGACRRQLYDDSELFYENYSDKTFILERMVVVAKNPCLHPGDIRVLK 1545
            T TLEYGQVFVQ SG  RRQL+DD  +   +  D  FI+E  VVVAKNPCLHPGD+RVL+
Sbjct: 714  TRTLEYGQVFVQFSGKRRRQLFDD--ICIHSSLDSCFIIEGKVVVAKNPCLHPGDVRVLR 771

Query: 1544 AVDVPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDRDLIPPSQASPMDYTPA 1365
            AV+VP LHHMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +LIPP Q  PMDYTPA
Sbjct: 772  AVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTPA 831

Query: 1364 PTMQLDHEVTIEEILEYFTNYIVNDSLGIISNAHTVFADREPKKAMSDPCLELAALFSIA 1185
            P +++D +VTIEE+ EYF NYIVNDSLGII+NAHTVFAD +  KAMS PCL+LA LFSIA
Sbjct: 832  PPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIA 891

Query: 1184 VDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYVSENVIGKLFREVKDHAPHTSSIRSFT 1005
            VDFPKTGVPAEIP  L  KEYPDFMEKPDK TY+S NVIG+LFREVKD APH SSI SFT
Sbjct: 892  VDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASFT 951

Query: 1004 REVAKRSYDNDLEVPGFEDYVDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSK 825
            R+VA + YD D+EV GFEDY+++AF +K  YDYKLGN++DYYGIKTEAEILSG IM +SK
Sbjct: 952  RQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLSK 1011

Query: 824  SFDRRKDAEAVGMAVRSLRKEARSWFKR------GGDLDDAYAKASAWYHVTYHPTYWGV 663
            SF +R+DA+A+ +AV+SLRKEAR+WF         GD DD YAKASAWYHVTYHP Y+G+
Sbjct: 1012 SFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGD-DDVYAKASAWYHVTYHPNYFGL 1070

Query: 662  YNEGLNRAHYISFPWCVYDKLIHIKRENSINWNRQMSSLEREFNSGLR 519
            YNEG+NRAH+ISFPWCV+DKL HIK+E  +N  R +SSLE     GLR
Sbjct: 1071 YNEGMNRAHFISFPWCVFDKLGHIKKE-KVNQARLISSLENRLRYGLR 1117