BLASTX nr result
ID: Catharanthus22_contig00000407
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Catharanthus22_contig00000407 (1864 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_008081256.1| RNA polymerase beta' subunit (chloroplast) [... 87 3e-25 gb|ADD31169.1| RNA polymerase beta' subunit protein [Nerium olea... 87 4e-24 ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum in... 85 6e-24 gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum] 85 6e-24 gb|AFI56047.1| RNA polymerase beta subunit, partial (chloroplast... 87 6e-24 ref|YP_817473.1| RNA polymerase beta [Coffea arabica] gi|1221536... 87 8e-24 gb|AFI56067.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI56059.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI56057.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI56053.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55987.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55979.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55971.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55961.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55953.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55949.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55943.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55941.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55933.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 gb|AFI55921.1| RNA polymerase beta subunit, partial (chloroplast... 87 8e-24 >ref|YP_008081256.1| RNA polymerase beta' subunit (chloroplast) [Catharanthus roseus] gi|474452067|gb|AGI51135.1| RNA polymerase beta' subunit (chloroplast) [Catharanthus roseus] Length = 684 Score = 86.7 bits (213), Expect(2) = 3e-25 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 503 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 551 Score = 57.8 bits (138), Expect(2) = 3e-25 Identities = 25/33 (75%), Positives = 27/33 (81%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNPGNR NYQN+RSDNNNY + FF Sbjct: 553 GICVNRYNPGNRRNYQNQRSDNNNYEYTKEPFF 585 >gb|ADD31169.1| RNA polymerase beta' subunit protein [Nerium oleander] Length = 687 Score = 86.7 bits (213), Expect(2) = 4e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 506 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 554 Score = 53.9 bits (128), Expect(2) = 4e-24 Identities = 23/33 (69%), Positives = 26/33 (78%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNPGN NYQN+RSDNN+Y + FF Sbjct: 556 GICVNRYNPGNHGNYQNQRSDNNHYDYMKEPFF 588 >ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum indicum] gi|347448286|gb|AEO92697.1| RNA polymerase beta' subunit (chloroplast) [Sesamum indicum] Length = 691 Score = 85.1 bits (209), Expect(2) = 6e-24 Identities = 43/49 (87%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDML+GLYVLTS R Sbjct: 510 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNR 558 Score = 54.7 bits (130), Expect(2) = 6e-24 Identities = 24/33 (72%), Positives = 26/33 (78%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQNKRS+NNNY + FF Sbjct: 560 GICVNRYNPWNRRNYQNKRSENNNYKYTKEPFF 592 >gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum] Length = 687 Score = 85.1 bits (209), Expect(2) = 6e-24 Identities = 43/49 (87%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDML+GLYVLTS R Sbjct: 506 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNR 554 Score = 54.7 bits (130), Expect(2) = 6e-24 Identities = 24/33 (72%), Positives = 26/33 (78%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQNKRS+NNNY + FF Sbjct: 556 GICVNRYNPWNRRNYQNKRSENNNYKYTKEPFF 588 >gb|AFI56047.1| RNA polymerase beta subunit, partial (chloroplast) [Tricalysia perrieri] Length = 262 Score = 87.0 bits (214), Expect(2) = 6e-24 Identities = 45/49 (91%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 IPLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 IPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 6e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >ref|YP_817473.1| RNA polymerase beta [Coffea arabica] gi|122153612|sp|A0A326.1|RPOC1_COFAR RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta'; Short=RNA polymerase subunit beta' gi|116242155|gb|ABJ89670.1| RNA polymerase beta [Coffea arabica] Length = 683 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 502 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 550 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 552 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 584 >gb|AFI56067.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea kianjavatensis] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI56059.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea pervilleana] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI56057.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea farafanganensis] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI56053.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea humblotiana] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55987.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea sahafaryensis] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55979.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea mauritiana] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55971.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea jumellei] gi|385267882|gb|AFI56063.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea jumellei] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55961.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea tricalysioides] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55953.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea lancifolia var. auriculata] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55949.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea vatovavyensis] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55943.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea ambongensis] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55941.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea mogeneti] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55933.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea bertrandii] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163 >gb|AFI55921.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea pterocarpa] gi|385267804|gb|AFI56011.1| RNA polymerase beta subunit, partial (chloroplast) [Coffea tricalysioides] Length = 262 Score = 86.7 bits (213), Expect(2) = 8e-24 Identities = 44/49 (89%), Positives = 45/49 (91%) Frame = +3 Query: 1602 IPLSLEAQAEARLLMFSHMNLLSPATGDPISVTTQDMLMGLYVLTSRYR 1748 +PLSLEAQAEARLLMFSHMNLLSPA GDPISV TQDMLMGLYVLTS R Sbjct: 81 VPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNR 129 Score = 52.8 bits (125), Expect(2) = 8e-24 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2 Query: 1751 GICVNRYNPGNRINYQNKRSDNNNY*VYERTFF 1849 GICVNRYNP NR NYQ K+SDNNNY + FF Sbjct: 131 GICVNRYNPWNRRNYQTKKSDNNNYEYTKEPFF 163