BLASTX nr result
ID: Catharanthus22_contig00000235
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00000235
(5202 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 187 0.0
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 170 0.0
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 174 0.0
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 171 0.0
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 174 0.0
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 157 0.0
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 168 e-179
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 163 e-176
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 162 e-175
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 181 e-173
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 177 e-172
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 170 e-162
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 181 e-157
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 169 e-155
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 156 e-154
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 159 e-144
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 163 e-142
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 160 e-128
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 179 e-110
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 179 e-110
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 187 bits (476), Expect(7) = 0.0
Identities = 135/395 (34%), Positives = 198/395 (50%), Gaps = 20/395 (5%)
Frame = +1
Query: 1345 KMKAVVVQNKIAPAICSSEKYPKSWKG--EVLAEKFGDAHSCLILHLIDNVLRE-GEKDN 1515
KMKA++V + A+ + + G + + AHS LIL L D++LRE E+
Sbjct: 23 KMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQNRAHSTLILSLGDSILREISEEKT 82
Query: 1516 TFEIWTK-----LKKTIFREVLVE*NL--FKMSGSNSLFENIDDLNKIVLELQNVGE-KI 1671
IW K +KK++ + ++ L F M ++ ++ID NKI+L+L+ V KI
Sbjct: 83 ALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHIDTFNKIILDLEGVENVKI 142
Query: 1672 SDENVAVILLNSLPESFNDIKSAIKYGRDGLTLSDVKNALKSKDLDLRKE-NKFNGENFY 1848
DE+ A LL+SLP+S+ + YGR LTL DVK +L SK++ E NGE
Sbjct: 143 CDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKASLSSKEIQKNCELETSNGEGLM 202
Query: 1849 IR---RRVDHREXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKIIKEEKQRKQG 2019
R ++ + CFYC KEGH CF+ K+E Q K G
Sbjct: 203 ARTEKKKDQKNKNQGKGHGKNQETADKKKKKRKCFYCRKEGHYIRDCFEKKKKESQEKSG 262
Query: 2020 KGINKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWVSDFKTL 2199
SD G+ Y L S S+ W++DS C+FH+ P K ++ +
Sbjct: 263 DAAVASDD-------GSDGYQSADLLVASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAV 315
Query: 2200 NHGKVFLGNNQVCDIKDIGNVFIKMHN---GMTRKLTEVRYVPDLRRNLISLGIFDSNAY 2370
+ G+V +GNN VC+I +G F K + R L EVR+ P L+RNLISLG+ DS Y
Sbjct: 316 DGGRVLMGNNNVCNI--VGIWFCKRSRCLMELLRSLHEVRHAPRLKRNLISLGMLDSLGY 373
Query: 2371 KSKNRI--MKVCKGALVMLKGFKRDGLYHLIGKTV 2469
K+RI ++V KG +++KG +GLY L G +V
Sbjct: 374 FFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSV 408
Score = 163 bits (413), Expect(7) = 0.0
Identities = 86/193 (44%), Positives = 123/193 (63%), Gaps = 1/193 (0%)
Frame = +1
Query: 4360 SLLKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIA 4539
+LLK+EF+MK LG+ RI GM+I RDRS +LF+SQ +++K++ +F M KPV T +
Sbjct: 1031 NLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLG 1090
Query: 4540 SHF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRD 4719
F K S T ++ M PY A+ S+MY+M+ R DIAY++S++SR++S PG+
Sbjct: 1091 PQF---KLSAATTSEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKV 1147
Query: 4720 HWAALNWLWQYINGTVDRGLLYDNW-SDNFELVGYVDSDFASDKDGRKSTTSRILNNLFT 4896
HW A+ W+ +Y+ G+ GLLY SD E++G+VDSDFA D D RKST+ +F
Sbjct: 1148 HWNAVKWIMRYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAGDLDRRKSTS----RYMFV 1203
Query: 4897 LAGNCIFWKSQLQ 4935
L I WKS LQ
Sbjct: 1204 LNSCLISWKSSLQ 1216
Score = 159 bits (403), Expect(7) = 0.0
Identities = 81/157 (51%), Positives = 104/157 (66%), Gaps = 3/157 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
+ + L+P ++LI+CKWIF K++ + + F Q EG+DFN IF
Sbjct: 842 RNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSP 901
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
VK+ +IRI+LA+VA DLELEQ+D+KT FLHG LEE I M QP GFE K KE CLL
Sbjct: 902 VVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLH 961
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYF 4262
KSLY LKQSPRQWY+RFD FM+ G+ + YD+C+YF
Sbjct: 962 KSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYF 998
Score = 123 bits (309), Expect(7) = 0.0
Identities = 57/119 (47%), Positives = 79/119 (66%)
Frame = +2
Query: 2504 EKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTY 2683
++T W ++GH+S K L L ++ LL GD+I L+FC++C+ GK H+ F G H S
Sbjct: 421 DRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQ 480
Query: 2684 VLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN 2860
VLDY H D WGP +VP+ + YF+S++DD+SR V I++LK KDQ EKF WK L EN
Sbjct: 481 VLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVEN 539
Score = 117 bits (293), Expect(7) = 0.0
Identities = 55/106 (51%), Positives = 74/106 (69%), Gaps = 4/106 (3%)
Frame = +1
Query: 2851 WRKLNQN----KLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*T 3018
W+ L +N KLK +RTDN LEF ++ F C H I H+ VR PQQNG+AER+N T
Sbjct: 533 WKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRT 592
Query: 3019 IMDKVRCLMMSSSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
++DK RC++++S +P+ FW EAV+T YL+NRSPS+ I FKT EL
Sbjct: 593 LVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEEL 638
Score = 99.8 bits (247), Expect(7) = 0.0
Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 6/223 (2%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXX 3337
W+ +P N NL+VFGC + H +G L+ R+ KGVF+GYP GVK YK+W C+
Sbjct: 639 WNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIW--CKDQGKCIV 696
Query: 3338 XXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLA 3517
F+E + A+ +N S +S+V+ A
Sbjct: 697 SRDVVFHESVLLKESAE------HDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAA 750
Query: 3518 SQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGYSYIVSYSFTAA 3697
S + ES+ + E P+A L++YQL+R R RR R PVRYGY+ +++Y+ A
Sbjct: 751 SDDERATAESEEHEVSE-LPQAD---LQNYQLARDRVRREVRAPVRYGYADLIAYALLCA 806
Query: 3698 SYIEEKEPLCF------LMC*RALIALCGCAMDEEMSSLHKNK 3808
+ +EP F + C + L AM +EM SL +N+
Sbjct: 807 DEVTIEEPANFSEAMESVHCDKWLE-----AMQDEMESLQRNQ 844
Score = 65.9 bits (159), Expect(7) = 0.0
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L+GLL EL + ++ D+Q+ +HL KN +YHERT +IDVK FIR++V G V + K
Sbjct: 1241 LRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHERTKHIDVKLQFIRDEVGKGTVVVSK 1300
Query: 5181 ISTKYNP 5201
I T NP
Sbjct: 1301 IHTSVNP 1307
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 170 bits (431), Expect(7) = 0.0
Identities = 83/196 (42%), Positives = 128/196 (65%)
Frame = +1
Query: 4363 LLKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIAS 4542
LL +EF+MK LG+ +I GM I RDR LF+SQ ++QK++++F M KP+ T A+
Sbjct: 1009 LLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAA 1068
Query: 4543 HF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDH 4722
+ + P++E EK+ M+ +PY A+ S+MY+M+ RPD+A+++S++SRFM PGR+H
Sbjct: 1069 NIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREH 1128
Query: 4723 WAALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLA 4902
W A+ +++Y+ GT D GL+Y + GY DSD+A D D R+S T + FTL
Sbjct: 1129 WQAVKRIFRYLRGTSDVGLIYGG-DTQCLVTGYSDSDYAGDVDTRRSMTGYV----FTLG 1183
Query: 4903 GNCIFWKSQLQPSVEL 4950
G+ + WK+ LQP+V L
Sbjct: 1184 GSVVSWKATLQPTVTL 1199
Score = 169 bits (428), Expect(7) = 0.0
Identities = 114/398 (28%), Positives = 207/398 (52%), Gaps = 13/398 (3%)
Frame = +1
Query: 1315 WQI*LHNVRKKMKAVVVQNKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNVL 1494
WQI KM+A++ Q + + + + +L EK AHS ++L L D+V+
Sbjct: 20 WQI-------KMRALLKQQGFWAPLSKDKNAVVTPEMAILEEK---AHSTIMLCLADDVI 69
Query: 1495 RE-GEKDNTFEIWTKLK-----KTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLEL 1650
E +++ +W KL+ K++ ++L++ LF +M+ L E+++ LN ++LEL
Sbjct: 70 TEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLLLEL 129
Query: 1651 QNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDGLTLSDVKNALKSKDLDLRKENKF 1830
+N+ KI DE+ A+ILL SLP SF + + G+D ++L +V++AL S++L +K
Sbjct: 130 RNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSREL----RHKA 185
Query: 1831 NGENFYIRRR---VDHREXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKIIKEE 2001
NG + I+ R+ C YC ++GH K C K K+
Sbjct: 186 NGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNYCKEKGHWKFDCPKKKKQS 245
Query: 2002 KQRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWV 2181
+++ + + D + ++ ++ + SD W+LDS ++H+ P + W
Sbjct: 246 EKQSVSAAVAEEDTNSE---------EDIALVADEHTHHSDVWVLDSGASYHICPRREWF 296
Query: 2182 SDFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLISLGIFDS 2361
+ ++ ++ G + + N+ VC + G++ I+ H+G L EVR+VP + +NLISL + DS
Sbjct: 297 TTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDS 356
Query: 2362 N--AYKSKNRIMKVCKGALVMLKGFKRDGLYHLIGKTV 2469
++ K+ +++V KG+ ++LKG R LY L G TV
Sbjct: 357 KGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTV 394
Score = 160 bits (406), Expect(7) = 0.0
Identities = 83/157 (52%), Positives = 112/157 (71%), Gaps = 3/157 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
+T +LV+ P S +K+I CKW+F K++ + + F Q EG+D+N IF
Sbjct: 821 QTWDLVIQP--SGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSP 878
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
V++ +IR++LAIVA+ +LELEQLD+KT FLHGELEE IYM QP GF+V KE+ C LK
Sbjct: 879 VVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLK 938
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYF 4262
KSLY LKQSPRQWYKRFDS+M+K G+ + +YD C+Y+
Sbjct: 939 KSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYY 975
Score = 112 bits (279), Expect(7) = 0.0
Identities = 48/121 (39%), Positives = 77/121 (63%)
Frame = +2
Query: 2504 EKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTY 2683
+ T W ++GH+ E+ + L +++LL G K+ L+FC+HCV GK H+ F H++
Sbjct: 409 DMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKG 468
Query: 2684 VLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN* 2863
LDY+H D WGP +V + +F+S++DD+SR ++++K K + F+KF EWK L EN
Sbjct: 469 TLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQ 528
Query: 2864 T 2866
T
Sbjct: 529 T 529
Score = 103 bits (258), Expect(7) = 0.0
Identities = 50/106 (47%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Frame = +1
Query: 2851 WRKLNQN----KLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*T 3018
W+ L +N K+K +RTDN LEF +F C I HR VR+ PQQNGVAER+N T
Sbjct: 521 WKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQT 580
Query: 3019 IMDKVRCLMMSSSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
++++ RC++ ++ + + FW EAVST YLINR P T I KT +E+
Sbjct: 581 LLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEM 626
Score = 92.4 bits (228), Expect(7) = 0.0
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 5/222 (2%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXX 3337
WS + + SNLK FGC + H EG L+PR+KKGVF+GY GVK +++W E
Sbjct: 627 WSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSR 686
Query: 3338 XXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLA 3517
+ L K E ++ E + EP+T
Sbjct: 687 NVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQT-------- 738
Query: 3518 SQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVH-REPVRYGYSYIVSYSFTA 3694
+TD+PES SD + +++ R RRV R P RYG+ +V Y+
Sbjct: 739 ---ETDIPESMPSDIHQ-------------SIAQDRPRRVGVRPPTRYGFEDMVGYALQV 782
Query: 3695 ASYIEEKEPLCFLMC*RALIALCG----CAMDEEMSSLHKNK 3808
A ++ EP + A+++ AM +EM SLHKN+
Sbjct: 783 AEEVDTSEPSTYK---EAILSSDSEKWFAAMGDEMESLHKNQ 821
Score = 59.7 bits (143), Expect(7) = 0.0
Identities = 29/67 (43%), Positives = 45/67 (67%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L+GL+++L + H +A +Y DS S + L K+ V+HERT +IDV+YHF+R S + + K
Sbjct: 1219 LKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKK 1275
Query: 5181 ISTKYNP 5201
+ T NP
Sbjct: 1276 VGTADNP 1282
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 174 bits (440), Expect(7) = 0.0
Identities = 86/196 (43%), Positives = 128/196 (65%)
Frame = +1
Query: 4363 LLKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIAS 4542
LL SEFDMK LGS +I GM I+RDR LF+SQ+ +++K++ +F+M K VST IA
Sbjct: 1034 LLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAP 1093
Query: 4543 HF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDH 4722
HF S CP + E + M+ +PY A+ S+MY+M+ RPD++Y++SL+SR+MSNPG++H
Sbjct: 1094 HFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEH 1153
Query: 4723 WAALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLA 4902
W A+ W+++Y+ GT L + L+GYVDSD+A+D D R+S T + FT+
Sbjct: 1154 WRAVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYV----FTIG 1207
Query: 4903 GNCIFWKSQLQPSVEL 4950
+ W++ LQ V L
Sbjct: 1208 SCAVSWRATLQSVVAL 1223
Score = 161 bits (407), Expect(7) = 0.0
Identities = 125/395 (31%), Positives = 201/395 (50%), Gaps = 20/395 (5%)
Frame = +1
Query: 1345 KMKAVVVQ-NKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNVLREGEKDNTF 1521
KM+ ++ Q + A+ + K W E + K A + + LHL +++L+E + T
Sbjct: 20 KMRGILAQTHDYDEALDNFGKRRAEWTAEEI-RKDQKALALIQLHLHNDILQECLIEKTS 78
Query: 1522 -EIWTKLK-----KTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLELQNVGEKISD 1677
E+W KL+ K + ++ ++ LF KM +S+ ++ + KIV +L ++ K D
Sbjct: 79 AELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDD 138
Query: 1678 ENVAVILLNSLPESFNDIKSAIKYGRDGLTLSDVKNALKSKD-LDLRKEN----KFNGEN 1842
E++ ++LL SLP S+ + + I RD LTL +V +AL++K+ + + +N GE
Sbjct: 139 EDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEA 198
Query: 1843 FYIRRRVDHR-EXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKI-IKEEKQRKQ 2016
++R R ++R C YC + H ++C K+ KE K +K
Sbjct: 199 LHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKD 258
Query: 2017 GKGINKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWVSDFKT 2196
GK S D +SG + L + + D WILDS C+FH+ ++W S +K
Sbjct: 259 GKVSVASAAASDDDSG------DCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKP 312
Query: 2197 LNHGKVF-LGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLISLGIFDSNAYK 2373
+ G V +G++ C I IG+V IK +GMTR L VRY+P + RNLISL D+ YK
Sbjct: 313 VQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYK 372
Query: 2374 --SKNRIMKVCKGALVMLKG-FKRDGLYHLIGKTV 2469
+ ++KV KG+LV LKG LY L G T+
Sbjct: 373 YSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 407
Score = 155 bits (392), Expect(7) = 0.0
Identities = 81/158 (51%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
K +VP K+K I CKWIF S K++ + + + Q+ G+D+N +F
Sbjct: 845 KNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSP 904
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
VK+ +IR L+IVA +DLELEQLD+KT FLHGELEE IYM QP GF V KE C LK
Sbjct: 905 VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 964
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
+SLY LKQSPRQW KRFDSFML F + YD+C+Y +
Sbjct: 965 RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIK 1002
Score = 106 bits (264), Expect(7) = 0.0
Identities = 51/123 (41%), Positives = 70/123 (56%)
Frame = +2
Query: 2501 PEKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKST 2680
P KT W ++GH+S + L ++NLL G + FC+HC+ GK ++ F H +
Sbjct: 422 PSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK 481
Query: 2681 YVLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN 2860
LDYVH DLWGP K P+ Y L+V+DD+SR V + LK KD TF F WK + E
Sbjct: 482 GTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIER 541
Query: 2861 *TK 2869
T+
Sbjct: 542 QTE 544
Score = 99.0 bits (245), Expect(7) = 0.0
Identities = 46/97 (47%), Positives = 63/97 (64%)
Frame = +1
Query: 2866 QNKLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*TIMDKVRCLM 3045
+ K+K +RTDN EF + F + C I+ H + H PQQNGVAER+N TI+ + RC++
Sbjct: 544 ERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCML 603
Query: 3046 MSSSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
+ + K FW EA ST YLINRSPS +N KT +E+
Sbjct: 604 SHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEV 640
Score = 68.6 bits (166), Expect(7) = 0.0
Identities = 65/224 (29%), Positives = 90/224 (40%), Gaps = 8/224 (3%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXX 3337
WS P + S LKVFGC +AH G L+PR+ K +F+GY SGVK YK+W E G
Sbjct: 641 WSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFM 698
Query: 3338 XXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLA 3517
FNE M V+D +G HE +
Sbjct: 699 SRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQD--------- 749
Query: 3518 SQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGYSYIVS-YSFTA 3694
DV + DD + P Q + +++ +++R + P R +S Y+ +
Sbjct: 750 -DHNNDVADDDAHDDVQQTPPI-LQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSC 807
Query: 3695 ASYIEE-KEPLCFLMC*RALIALCG------CAMDEEMSSLHKN 3805
A +E EP + R CG AM EEM SL KN
Sbjct: 808 AEQVENVHEPATYKEAVR-----CGDSENWISAMHEEMQSLEKN 846
Score = 65.9 bits (159), Expect(7) = 0.0
Identities = 30/67 (44%), Positives = 46/67 (68%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L+GL EL + S ++ DSQS ++L K+ ++HERT +ID+KYHF+R+ + G + + K
Sbjct: 1243 LKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCK 1302
Query: 5181 ISTKYNP 5201
IST NP
Sbjct: 1303 ISTHDNP 1309
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 171 bits (433), Expect(7) = 0.0
Identities = 85/196 (43%), Positives = 127/196 (64%)
Frame = +1
Query: 4363 LLKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIAS 4542
LL SEFDMK LGS +I M I+RDR LF+SQ+ +++K++ +F+M K VST IA
Sbjct: 1034 LLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAP 1093
Query: 4543 HF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDH 4722
HF S CP T+ E + M+ +PY A+ S+MY+M+ RPD++Y++SL+SR+MSNPG++H
Sbjct: 1094 HFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEH 1153
Query: 4723 WAALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLA 4902
W + W+++Y+ GT L + L+GYVDSD+A+D D R+S T + FT+
Sbjct: 1154 WRVVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYV----FTIG 1207
Query: 4903 GNCIFWKSQLQPSVEL 4950
+ W++ LQ V L
Sbjct: 1208 SCAVSWRATLQSVVAL 1223
Score = 162 bits (410), Expect(7) = 0.0
Identities = 127/405 (31%), Positives = 204/405 (50%), Gaps = 20/405 (4%)
Frame = +1
Query: 1315 WQI*LHNVRKKMKAVVVQ-NKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNV 1491
WQ+ KM+ ++ Q + A+ + K W E + K A + + LHL +++
Sbjct: 17 WQV-------KMRGILAQTHDYDEALDNFGKRRAEWTAEEI-RKDQKALALIQLHLHNDI 68
Query: 1492 LREGEKDNTF-EIWTKLK-----KTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLE 1647
L+E + T E+W KL+ K + ++ ++ LF KM +S+ ++ + KIV +
Sbjct: 69 LQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVAD 128
Query: 1648 LQNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDGLTLSDVKNALKSKD-LDLRKEN 1824
L ++ K DE++ ++LL SLP S+ + + I RD LTL +V +AL++K+ + + +N
Sbjct: 129 LVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQN 188
Query: 1825 ----KFNGENFYIRRRVDHR-EXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKI 1989
GE ++R R ++R C YC + H ++C K+
Sbjct: 189 DGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKV 248
Query: 1990 -IKEEKQRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTP 2166
KE K +K GK S D +SG + L + + D WILDS C+FH+
Sbjct: 249 QAKERKNKKDGKVSVASAAASDDDSG------DCLVVFAGCVAGHDEWILDSACSFHICT 302
Query: 2167 NKHWVSDFKTLNHGKVF-LGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLIS 2343
++W S +K + G V +G++ C I IG+V IK +GMTR L VRY+P + RNLIS
Sbjct: 303 KRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLIS 362
Query: 2344 LGIFDSNAYK--SKNRIMKVCKGALVMLKG-FKRDGLYHLIGKTV 2469
L D+ YK + ++KV KG+LV LKG LY L G T+
Sbjct: 363 LSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 407
Score = 155 bits (392), Expect(7) = 0.0
Identities = 81/158 (51%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
K +VP K+K I CKWIF S K++ + + + Q+ G+D+N +F
Sbjct: 845 KNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSP 904
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
VK+ +IR L+IVA +DLELEQLD+KT FLHGELEE IYM QP GF V KE C LK
Sbjct: 905 VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 964
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
+SLY LKQSPRQW KRFDSFML F + YD+C+Y +
Sbjct: 965 RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIK 1002
Score = 105 bits (263), Expect(7) = 0.0
Identities = 50/123 (40%), Positives = 70/123 (56%)
Frame = +2
Query: 2501 PEKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKST 2680
P KT W ++GH+S + L ++NLL G + FC+HC+ GK ++ F H +
Sbjct: 422 PSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK 481
Query: 2681 YVLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN 2860
LDYVH DLWGP K P+ Y L+++DD+SR V + LK KD TF F WK + E
Sbjct: 482 GTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIER 541
Query: 2861 *TK 2869
T+
Sbjct: 542 QTE 544
Score = 99.0 bits (245), Expect(7) = 0.0
Identities = 46/97 (47%), Positives = 63/97 (64%)
Frame = +1
Query: 2866 QNKLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*TIMDKVRCLM 3045
+ K+K +RTDN EF + F + C I+ H + H PQQNGVAER+N TI+ + RC++
Sbjct: 544 ERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCML 603
Query: 3046 MSSSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
+ + K FW EA ST YLINRSPS +N KT +E+
Sbjct: 604 SHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEV 640
Score = 68.6 bits (166), Expect(7) = 0.0
Identities = 65/224 (29%), Positives = 90/224 (40%), Gaps = 8/224 (3%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXX 3337
WS P + S LKVFGC +AH G L+PR+ K +F+GY SGVK YK+W E G
Sbjct: 641 WSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFM 698
Query: 3338 XXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLA 3517
FNE M V+D +G HE +
Sbjct: 699 SRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDYTGVQVEPVHEQD--------- 749
Query: 3518 SQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGYSYIVS-YSFTA 3694
DV + DD + P Q + +++ +++R + P R +S Y+ +
Sbjct: 750 -DHNNDVADDDAHDDVQQTPPI-LQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSC 807
Query: 3695 ASYIEE-KEPLCFLMC*RALIALCG------CAMDEEMSSLHKN 3805
A +E EP + R CG AM EEM SL KN
Sbjct: 808 AEQVENVHEPATYKEAVR-----CGDSENWISAMHEEMQSLEKN 846
Score = 65.9 bits (159), Expect(7) = 0.0
Identities = 30/67 (44%), Positives = 46/67 (68%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L+GL EL + S ++ DSQS ++L K+ ++HERT +ID+KYHF+R+ + G + + K
Sbjct: 1243 LKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCK 1302
Query: 5181 ISTKYNP 5201
IST NP
Sbjct: 1303 ISTHDNP 1309
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 174 bits (440), Expect(7) = 0.0
Identities = 86/196 (43%), Positives = 128/196 (65%)
Frame = +1
Query: 4363 LLKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIAS 4542
LL SEFDMK LGS +I GM I+RDR LF+SQ+ +++K++ +F+M K VST IA
Sbjct: 1034 LLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAP 1093
Query: 4543 HF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDH 4722
HF S CP + E + M+ +PY A+ S+MY+M+ RPD++Y++SL+SR+MSNPG++H
Sbjct: 1094 HFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEH 1153
Query: 4723 WAALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLA 4902
W A+ W+++Y+ GT L + L+GYVDSD+A+D D R+S T + FT+
Sbjct: 1154 WRAVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYV----FTIG 1207
Query: 4903 GNCIFWKSQLQPSVEL 4950
+ W++ LQ V L
Sbjct: 1208 SCAVSWRATLQSVVAL 1223
Score = 162 bits (410), Expect(7) = 0.0
Identities = 127/405 (31%), Positives = 204/405 (50%), Gaps = 20/405 (4%)
Frame = +1
Query: 1315 WQI*LHNVRKKMKAVVVQ-NKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNV 1491
WQ+ KM+ ++ Q + A+ + K W E + K A + + LHL +++
Sbjct: 17 WQV-------KMRGILAQTHDYDEALDNFGKRRAEWTAEEI-RKDQKALALIQLHLHNDI 68
Query: 1492 LREGEKDNTF-EIWTKLK-----KTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLE 1647
L+E + T E+W KL+ K + ++ ++ LF KM +S+ ++ + KIV +
Sbjct: 69 LQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVAD 128
Query: 1648 LQNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDGLTLSDVKNALKSKD-LDLRKEN 1824
L ++ K DE++ ++LL SLP S+ + + I RD LTL +V +AL++K+ + + +N
Sbjct: 129 LVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQN 188
Query: 1825 ----KFNGENFYIRRRVDHR-EXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKI 1989
GE ++R R ++R C YC + H ++C K+
Sbjct: 189 DGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKV 248
Query: 1990 -IKEEKQRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTP 2166
KE K +K GK S D +SG + L + + D WILDS C+FH+
Sbjct: 249 QAKERKNKKDGKVSVASAAASDDDSG------DCLVVFAGCVAGHDEWILDSACSFHICT 302
Query: 2167 NKHWVSDFKTLNHGKVF-LGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLIS 2343
++W S +K + G V +G++ C I IG+V IK +GMTR L VRY+P + RNLIS
Sbjct: 303 KRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLIS 362
Query: 2344 LGIFDSNAYK--SKNRIMKVCKGALVMLKGFKRDG-LYHLIGKTV 2469
L D+ YK + ++KV KG+LV LKG LY L G T+
Sbjct: 363 LSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTL 407
Score = 155 bits (392), Expect(7) = 0.0
Identities = 81/158 (51%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
K +VP K+K I CKWIF S K++ + + + Q+ G+D+N +F
Sbjct: 845 KNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSP 904
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
VK+ +IR L+IVA +DLELEQLD+KT FLHGELEE IYM QP GF V KE C LK
Sbjct: 905 VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 964
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
+SLY LKQSPRQW KRFDSFML F + YD+C+Y +
Sbjct: 965 RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIK 1002
Score = 105 bits (263), Expect(7) = 0.0
Identities = 50/123 (40%), Positives = 70/123 (56%)
Frame = +2
Query: 2501 PEKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKST 2680
P KT W ++GH+S + L ++NLL G + FC+HC+ GK ++ F H +
Sbjct: 422 PSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK 481
Query: 2681 YVLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN 2860
LDYVH DLWGP K P+ Y L+++DD+SR V + LK KD TF F WK + E
Sbjct: 482 GTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIER 541
Query: 2861 *TK 2869
T+
Sbjct: 542 QTE 544
Score = 99.0 bits (245), Expect(7) = 0.0
Identities = 46/97 (47%), Positives = 63/97 (64%)
Frame = +1
Query: 2866 QNKLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*TIMDKVRCLM 3045
+ K+K +RTDN EF + F + C I+ H + H PQQNGVAER+N TI+ + RC++
Sbjct: 544 ERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCML 603
Query: 3046 MSSSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
+ + K FW EA ST YLINRSPS +N KT +E+
Sbjct: 604 SHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEV 640
Score = 68.9 bits (167), Expect(7) = 0.0
Identities = 65/224 (29%), Positives = 90/224 (40%), Gaps = 8/224 (3%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXX 3337
WS P + S LKVFGC +AH G L+PR+ K +F+GY SGVK YK+W E G
Sbjct: 641 WSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFM 698
Query: 3338 XXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLA 3517
FNE M V+D +G HE +
Sbjct: 699 SRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQD--------- 749
Query: 3518 SQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGYSYIVS-YSFTA 3694
DV + DD + P Q + +++ +++R + P R +S Y+ +
Sbjct: 750 -DHNNDVADDDAHDDVQQTPPI-LQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSC 807
Query: 3695 ASYIEE-KEPLCFLMC*RALIALCG------CAMDEEMSSLHKN 3805
A +E EP + R CG AM EEM SL KN
Sbjct: 808 AEQVENVHEPATYKEAVR-----CGDSENWISAMHEEMQSLEKN 846
Score = 52.8 bits (125), Expect(7) = 0.0
Identities = 22/51 (43%), Positives = 37/51 (72%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKV 5153
L+GL EL + S ++ DS+S ++L K+ ++HERT +ID+KYHF+R+ +
Sbjct: 1243 LKGLYAELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDIKYHFVRDVI 1293
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 157 bits (396), Expect(7) = 0.0
Identities = 80/205 (39%), Positives = 126/205 (61%), Gaps = 4/205 (1%)
Frame = +1
Query: 4333 IEIRLLVQISLLK----SEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKF 4500
I R ++QI LK +EFDMK LG+ +I G+ I RDR+ +++SQ ++ KI+ +F
Sbjct: 986 IACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERF 1045
Query: 4501 SMYLYKPVSTSIASHF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSI 4680
+M K VS +A+HF S + P + E M N+PY A+ +MY+MI RPD+A ++
Sbjct: 1046 NMAEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAM 1105
Query: 4681 SLLSRFMSNPGRDHWAALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRK 4860
S++S++MSNPG+ HW A+ W+++Y+ T G++++ + G+VDSDFA D D R+
Sbjct: 1106 SVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEACVAGFVDSDFAGDLDRRR 1165
Query: 4861 STTSRILNNLFTLAGNCIFWKSQLQ 4935
ST + FT G + WK+ LQ
Sbjct: 1166 STAGYV----FTCGGGPVSWKATLQ 1186
Score = 155 bits (393), Expect(7) = 0.0
Identities = 75/151 (49%), Positives = 104/151 (68%), Gaps = 3/151 (1%)
Frame = +3
Query: 3819 LVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF---VKYKT 3989
LVPK ++KL+ CKW+F ++ + K + Q EG+D++ IF VK+ +
Sbjct: 816 LVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTS 875
Query: 3990 IRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLKKSLYRL 4169
IR++L+I A YD+E+EQ+D+KT FLHG+LEE IYM QP GF KE++ C LKKSLY L
Sbjct: 876 IRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGL 935
Query: 4170 KQSPRQWYKRFDSFMLKAGFIKRNYDNCLYF 4262
KQSPRQWYK FD++MLK G+ + YD C+Y+
Sbjct: 936 KQSPRQWYKPFDTYMLKIGYTRCQYDCCVYY 966
Score = 153 bits (386), Expect(7) = 0.0
Identities = 125/389 (32%), Positives = 184/389 (47%), Gaps = 15/389 (3%)
Frame = +1
Query: 1348 MKAVVVQNKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNVLRE-GEKDNTFE 1524
MK V++Q + AI + P + + +K SC+ LHL DNVL GE E
Sbjct: 1 MKNVLIQQETDKAIRTK---PTNMSDVLWTKKNKKTKSCIELHLADNVLLHIGETMTAKE 57
Query: 1525 IWTKLK-----KTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLELQNVGEKISDEN 1683
W L+ K+I ++L++ LF KM + L ++I + L+ VG K+ DE+
Sbjct: 58 AWENLESVYKGKSIGNKLLLKEQLFGLKMEEGDDLNDHICKFQNCIANLEKVGAKMDDED 117
Query: 1684 VAVILLNSLPESFNDIKSAIKYGRDGLTLSDVKNALKSKDLDLRKENKFNGENFYIRR-- 1857
AV+LL+SLP F K+ + + ++ +TLS V KS R+E+ Y+R
Sbjct: 118 TAVMLLHSLPPLFKHFKTTMIF-KELITLSKVCENPKSYIRLEREEDSSQARGLYVRGKE 176
Query: 1858 --RVDHREXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKIIKEEKQRKQGKGIN 2031
R +R CF H K C K KE+K + G+
Sbjct: 177 RGRSRNRGGGFQGRGMSKSKGKGKGKKDGCFIYGSPDHWKRNC-KQWKEKKAQMSGE--- 232
Query: 2032 KSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWVSDFKTLNHGK 2211
S + + G N E+L +S S S +W LD+ CTFH ++ W +K N
Sbjct: 233 -SSQLANVVIGYNDEDGELLAISTS-SGAPRHWTLDTACTFHTCAHRDWFDTYKEGNTRS 290
Query: 2212 VFLGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLISLGIFDSNAY--KSKNR 2385
V +GN+ I IG V I+MH+G+ R L VR+ P L RNLISL D + K +N
Sbjct: 291 VLMGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGLNRNLISLSTMDRVGFWHKGQNG 350
Query: 2386 IMKVCKGALVMLKG-FKRDGLYHLIGKTV 2469
++KV KG +V +KG + D +Y L G TV
Sbjct: 351 VLKVGKGQMVYMKGAIQPDNMYKLTGSTV 379
Score = 108 bits (271), Expect(7) = 0.0
Identities = 53/116 (45%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Frame = +2
Query: 2504 EKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGT--HKS 2677
+KT W R++GH+S++ L LH+K L G L+FC +C LGKQ +++F + + +KS
Sbjct: 390 DKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENKS 449
Query: 2678 TYVLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWK 2845
VLDY+H D+WGP + YF+S +DDFSR V IF +KTK++ F KF EWK
Sbjct: 450 KGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWK 505
Score = 96.7 bits (239), Expect(7) = 0.0
Identities = 45/95 (47%), Positives = 63/95 (66%)
Frame = +1
Query: 2872 KLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*TIMDKVRCLMMS 3051
K+K +R+DN E+ ++KF+ LC I H V+ +PQQNGVAER+N T+M+K R +
Sbjct: 515 KIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTLMEKERSMRFH 574
Query: 3052 SSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
+ +P+ FW EA + YLINRSPS INFK E+
Sbjct: 575 AGLPEEFWAEAANHACYLINRSPSRAINFKCAEEV 609
Score = 60.5 bits (145), Expect(7) = 0.0
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 10/226 (4%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFAH---QKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXX 3328
WS +P + SNL+VFGC+ +AH + L+P+S + +FIG+ GVK YK+W
Sbjct: 610 WSGKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLW-------- 661
Query: 3329 XXXXXXXXFNELDM----PCFKAKXXXXXXXXXXXXENIPVEVE-DTSGSSQVHTHEPET 3493
NE + F + + +VE + G+ +V EPE
Sbjct: 662 ------DIVNEKKVISRDVVFDEREAISISLAKPSVADSEAQVEQNEQGNDEVAIEEPEH 715
Query: 3494 SGKSDVLASQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPV-RYGYSY 3670
+ V+A V +S + P+A R L + + +R+P+ R+G+
Sbjct: 716 QQQPTVMA-----QVEQSPQRGQNSPIPQAPESFKRSIALDKPKR---NRKPIQRFGFE- 766
Query: 3671 IVSYSFTAASYIEEKEPLCFLMC*RALIALCGC-AMDEEMSSLHKN 3805
+ A I + +P + ++ + AM EEM SLHKN
Sbjct: 767 -PEEDVSRALSISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKN 811
Score = 58.9 bits (141), Expect(7) = 0.0
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L GL +L V V+ DSQS +HL KN V+H RT +ID +YH IR+ V +G++ + K
Sbjct: 1211 LNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEK 1270
Query: 5181 ISTKYN 5198
+ T N
Sbjct: 1271 VHTDDN 1276
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 168 bits (426), Expect(7) = e-179
Identities = 86/195 (44%), Positives = 123/195 (63%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIASH 4545
L EFDMK LG ++I GM I RDR D +++SQ +LQK++ +F+M Y P+ST + +
Sbjct: 1006 LAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNMQDYNPISTPLPVN 1065
Query: 4546 F*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDHW 4725
+ S P +E E+ +M+ +PY A+ S+MY+MI RPDIA ++ +SRFM++PG++HW
Sbjct: 1066 YKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGTVSRFMADPGKEHW 1125
Query: 4726 AALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLAG 4905
A+ + +YI GT L + F + GYVDSDFA D D RKSTT + FTLAG
Sbjct: 1126 NAVKRILRYIRGTSGAALCFG--GSEFTIRGYVDSDFAGDLDKRKSTTGYV----FTLAG 1179
Query: 4906 NCIFWKSQLQPSVEL 4950
+ W S+LQ V L
Sbjct: 1180 GAVSWLSKLQTVVAL 1194
Score = 146 bits (369), Expect(7) = e-179
Identities = 114/401 (28%), Positives = 192/401 (47%), Gaps = 18/401 (4%)
Frame = +1
Query: 1345 KMKAVVVQNKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNVLRE-GEKDNTF 1521
K+KA++ ++ PAI + P + E +A + L L + D+VL EK
Sbjct: 21 KIKAILRKDNCLPAI---DGRPADITDDKRKEMDDNAVANLHLAVADSVLSSIAEKKTAK 77
Query: 1522 EIWTKL-----KKTIFREVLVE*NL--FKMSGSNSLFENIDDLNKIVLELQNVGEKISDE 1680
+IW L K++ + ++ L F+MS S S+ ++I++LN + +L I +
Sbjct: 78 KIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIGEN 137
Query: 1681 NVAVILLNSLPESFNDIKSAIKYGR--DGLTLSDVKNAL-----KSKDLDLRKENKFNGE 1839
A +LL SLP+S++ + I D L+ +DV A+ + K+ + R+++ E
Sbjct: 138 ERAEVLLQSLPDSYDQLVINITNNNIVDRLSFNDVAGAILEEESRRKNKEDRQDSSKQME 197
Query: 1840 NFYIRRRVDHREXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKIIKEEKQRKQG 2019
+ R E C+ C K GH+K C+ ++ K
Sbjct: 198 ALTVTRGRS-TERGPSGSQNHGRSTSRRKTNLKCYNCGKRGHLKKDCWS--NKKSGEKSS 254
Query: 2020 KGINKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWVSDFKTL 2199
+ G +Y E ++ + ++D WI+DS T+HMTP + W ++ +
Sbjct: 255 EASTSQGCVASTSDDGEVLYSEAAVSTKGKNRLTDVWIVDSGATWHMTPRRDWFCTYEPV 314
Query: 2200 NHGKVFLGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLISLGIFDSNAYK-- 2373
+ G VF+GN+ +I IG V IKM++G R L EVR+V +L +NL+S+G D YK
Sbjct: 315 SEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEVRHVKELAKNLLSVGQLDDLGYKYD 374
Query: 2374 SKNRIMKVCKGALVMLKGFK-RDGLYHLIGKTVYEASALIS 2493
+ I+KV KG+LV++K K LY L+G T A A ++
Sbjct: 375 IQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADASVA 415
Score = 141 bits (355), Expect(7) = e-179
Identities = 79/157 (50%), Positives = 105/157 (66%), Gaps = 3/157 (1%)
Frame = +3
Query: 3804 TKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF--- 3974
T LV +PK +K I KW+F R Q +++ + K + Q EGIDFN IF
Sbjct: 819 TWELVELPK--GRKAIGNKWVFKIKRDGNDQ-VERYRARLVVKGYAQKEGIDFNEIFSPV 875
Query: 3975 VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLKK 4154
V+ TIRI+LA+ A ++L LEQLD+KT FLHGELEE IYM QP GFE K +E++ C L K
Sbjct: 876 VRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKERENLVCRLTK 935
Query: 4155 SLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
SLY LKQ+PR WYKRFDSF++ G+ + + D+C Y++
Sbjct: 936 SLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYK 972
Score = 98.6 bits (244), Expect(7) = e-179
Identities = 47/114 (41%), Positives = 72/114 (63%)
Frame = +2
Query: 2504 EKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTY 2683
E TM W R++GH+SE+ L L E+NL+ G K L FC+HCV+ KQH+L F T +S +
Sbjct: 421 ETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTARSKH 480
Query: 2684 VLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWK 2845
+LD +H D+W +V + YF+S +DD+SR + ++ +K K + F E+K
Sbjct: 481 ILDLIHSDVWESPEV-SIGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFK 533
Score = 91.3 bits (225), Expect(7) = e-179
Identities = 41/95 (43%), Positives = 60/95 (63%)
Frame = +1
Query: 2872 KLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*TIMDKVRCLMMS 3051
++K +RTDN E+ + F+ C I V H PQQNGVAER+N T++++ R ++ +
Sbjct: 543 RIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRTLLERTRAMLKT 602
Query: 3052 SSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
+ + K FW EA T Y+INRSPST I KT +E+
Sbjct: 603 AGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEM 637
Score = 67.4 bits (163), Expect(7) = e-179
Identities = 33/65 (50%), Positives = 41/65 (63%)
Frame = +3
Query: 5004 QGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*KI 5183
Q LL EL K +Y DS S LH+ +NP +H RT +I V+YHF+RE V G VN+ KI
Sbjct: 1215 QRLLEELGHKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKI 1274
Query: 5184 STKYN 5198
TK N
Sbjct: 1275 HTKDN 1279
Score = 52.4 bits (124), Expect(7) = e-179
Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 4/220 (1%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFA---HQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXX 3328
W +P + S+L+VFGC + Q+ LDP+S++ F+GY VK Y++W
Sbjct: 638 WKGKPGDYSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLW-------- 689
Query: 3329 XXXXXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSD 3508
F D+ + + E VE+E+ SG
Sbjct: 690 -DPTARKIFVSRDVIFVENELQKEQKNDGTTKETATVEIEEKSG---------------- 732
Query: 3509 VLASQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGYSYIVSYSF 3688
+NS+ + +H E + + D + R R R+P + Y+++
Sbjct: 733 ------------EENSEAEPEHEEQEPNEVNDAE--PRRTTRQIRKP-SWHSEYVMASHD 777
Query: 3689 TAASYIEEKEPLCFLMC*RALIA-LCGCAMDEEMSSLHKN 3805
E+ EP F A L AM EE+ +LH+N
Sbjct: 778 AYCLLSEDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRN 817
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 163 bits (412), Expect(7) = e-176
Identities = 85/195 (43%), Positives = 122/195 (62%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIASH 4545
L EFDMK LG ++I GM I RDR D +++SQ +L+K++ +F+M KP+ST + +
Sbjct: 1006 LAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVN 1065
Query: 4546 F*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDHW 4725
F S P E E+ +M+ +PY A+ S+MY+MI RPDIA ++ ++SRFM++PG++HW
Sbjct: 1066 FKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHW 1125
Query: 4726 AALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLAG 4905
A+ + +YI GT G+ + GYVDSDFA D D RKSTT + FTLAG
Sbjct: 1126 NAVKRIMRYIKGT--SGVAVCFGGSELTVRGYVDSDFAGDHDKRKSTTGYV----FTLAG 1179
Query: 4906 NCIFWKSQLQPSVEL 4950
+ W S+LQ V L
Sbjct: 1180 GAVSWLSKLQTVVAL 1194
Score = 147 bits (372), Expect(7) = e-176
Identities = 116/406 (28%), Positives = 195/406 (48%), Gaps = 23/406 (5%)
Frame = +1
Query: 1345 KMKAVVVQNKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNVLRE-GEKDNTF 1521
K++A++ ++ AI + P E E +A + L L + D+VL EK
Sbjct: 21 KIRAILRKDNCLDAI---DGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAK 77
Query: 1522 EIWTKL-----KKTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLELQNVGEKISDE 1680
EIW L K++ + ++ L+ +M S S+ ++I+ LN + +L KI++
Sbjct: 78 EIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAEN 137
Query: 1681 NVAVILLNSLPESFNDIKSAIKYGR--DGLTLSDVKNAL-----KSKDLDLRKENKFNGE 1839
A +LL SLP+S++ + I D L DV A+ + K+ + R E+ E
Sbjct: 138 ERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAILEEESRRKNKEERSESSKQAE 197
Query: 1840 NFYIRRRVDHREXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKIIKE-----EK 2004
+ R E C+ C +GH+K +C+ I K E
Sbjct: 198 ALTMTRGRS-TERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEA 256
Query: 2005 QRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWVS 2184
QG + SD G +Y E S+ ++D WI+DS T+HMTP++ W
Sbjct: 257 STSQGCVASTSDD-------GEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFF 309
Query: 2185 DFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLISLGIFDSN 2364
++ ++ G V++GN+ +I +G + +KMH+G RK+ VR+V L++NL+S+G D
Sbjct: 310 SYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDL 369
Query: 2365 AYK--SKNRIMKVCKGALVMLKGFK-RDGLYHLIGKTVYEASALIS 2493
K +++ I+KV KG LV++K K LY L+G T+ EA A ++
Sbjct: 370 GCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVA 415
Score = 137 bits (345), Expect(7) = e-176
Identities = 77/158 (48%), Positives = 104/158 (65%), Gaps = 3/158 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
KT LV +PK +K I KW++ R Q +++ + K + Q EGIDFN IF
Sbjct: 818 KTWELVELPK--GRKAIGNKWVYKIKRDGNDQ-VERYRARLVVKGYAQKEGIDFNEIFSP 874
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
V+ TIR++LA+ A DL LEQLD+KT FLHGELEE IYM QP GF+ + KE++ C L
Sbjct: 875 VVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLT 934
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
KSLY LKQ+PR WYKRFDSF++ + + + D+C Y++
Sbjct: 935 KSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYK 972
Score = 96.7 bits (239), Expect(7) = e-176
Identities = 46/106 (43%), Positives = 69/106 (65%)
Frame = +1
Query: 2839 VEMPWRKLNQNKLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*T 3018
+E+ RK K+K +RTDN E+ + +F+ C I+ V H PQQNGVAER+N T
Sbjct: 536 IELETRK----KIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRT 591
Query: 3019 IMDKVRCLMMSSSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
++++ R ++ ++ + K FW EAV T Y+INRSPST I+ KT +E+
Sbjct: 592 LLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEM 637
Score = 95.1 bits (235), Expect(7) = e-176
Identities = 46/114 (40%), Positives = 71/114 (62%)
Frame = +2
Query: 2504 EKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTY 2683
E TM W +++GH+SE+ L L E+NLL G K L FC+HCV+ KQH+L F T +S +
Sbjct: 421 ETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKH 480
Query: 2684 VLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWK 2845
+LD +H D+W ++ + YF+S +DD+SR + ++ +K K F F +K
Sbjct: 481 ILDLIHSDVWESPEI-SLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFK 533
Score = 64.3 bits (155), Expect(7) = e-176
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
+Q L+ EL + +Y DSQS LH+ +NP +H RT +I V+YHF+RE V G V++ K
Sbjct: 1214 MQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQK 1273
Query: 5181 ISTKYN 5198
I T N
Sbjct: 1274 IHTNDN 1279
Score = 51.6 bits (122), Expect(7) = e-176
Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 4/221 (1%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFA---HQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXX 3328
W +P + S+L VFGC + Q+ LDP+S+K +F+GY VK Y++W
Sbjct: 638 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW-------- 689
Query: 3329 XXXXXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSD 3508
+ V + +++ + + S +
Sbjct: 690 ----------------------------DPTARKVVVSRDVVFAENELQSEQKNDSTSKE 721
Query: 3509 VLASQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGYSYIVSYSF 3688
Q + ES +S+ + H E + + D R+ R ++P + Y+++
Sbjct: 722 TAIVQMEEKSKESDSSEAESVHEEQEPDDVND---GVRRSTRQTQKP-SWQSDYVMTSHD 777
Query: 3689 TAASYIEEKEPLCFLMC*RALIA-LCGCAMDEEMSSLHKNK 3808
EE EP F A AM EEM +LH+NK
Sbjct: 778 AYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNK 818
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 162 bits (410), Expect(7) = e-175
Identities = 85/195 (43%), Positives = 122/195 (62%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIASH 4545
L EFDMK LG ++I GM I RDR D +++SQ +L+K++ +F+M KP+ST + +
Sbjct: 1006 LAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVN 1065
Query: 4546 F*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDHW 4725
F S P E E+ +M+ +PY A+ S+MY+MI RPDIA ++ ++SRFM++PG++HW
Sbjct: 1066 FKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHW 1125
Query: 4726 AALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLAG 4905
A+ + +YI GT G+ + GYVDSDFA D D RKSTT + FTLAG
Sbjct: 1126 NAVKRIMRYIKGT--SGVAVCFGGSELTVRGYVDSDFAGDHDKRKSTTGYV----FTLAG 1179
Query: 4906 NCIFWKSQLQPSVEL 4950
+ W S+LQ V L
Sbjct: 1180 GAVSWLSKLQTVVAL 1194
Score = 147 bits (372), Expect(7) = e-175
Identities = 116/406 (28%), Positives = 195/406 (48%), Gaps = 23/406 (5%)
Frame = +1
Query: 1345 KMKAVVVQNKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNVLRE-GEKDNTF 1521
K++A++ ++ AI + P E E +A + L L + D+VL EK
Sbjct: 21 KIRAILRKDNCLDAI---DGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAK 77
Query: 1522 EIWTKL-----KKTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLELQNVGEKISDE 1680
EIW L K++ + ++ L+ +M S S+ ++I+ LN + +L KI++
Sbjct: 78 EIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAEN 137
Query: 1681 NVAVILLNSLPESFNDIKSAIKYGR--DGLTLSDVKNAL-----KSKDLDLRKENKFNGE 1839
A +LL SLP+S++ + I D L DV A+ + K+ + R E+ E
Sbjct: 138 ERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAE 197
Query: 1840 NFYIRRRVDHREXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKIIKE-----EK 2004
+ R E C+ C +GH+K +C+ I K E
Sbjct: 198 ALTMTRGRS-TERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEA 256
Query: 2005 QRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWVS 2184
QG + SD G +Y E S+ ++D WI+DS T+HMTP++ W
Sbjct: 257 STSQGCVASTSDD-------GEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFF 309
Query: 2185 DFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLISLGIFDSN 2364
++ ++ G V++GN+ +I +G + +KMH+G RK+ VR+V L++NL+S+G D
Sbjct: 310 SYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDL 369
Query: 2365 AYK--SKNRIMKVCKGALVMLKGFK-RDGLYHLIGKTVYEASALIS 2493
K +++ I+KV KG LV++K K LY L+G T+ EA A ++
Sbjct: 370 GCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVA 415
Score = 137 bits (345), Expect(7) = e-175
Identities = 77/158 (48%), Positives = 104/158 (65%), Gaps = 3/158 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
KT LV +PK +K I KW++ R Q +++ + K + Q EGIDFN IF
Sbjct: 818 KTWELVELPK--GRKAIGNKWVYKIKRDGNDQ-VERYRARLVVKGYAQKEGIDFNEIFSP 874
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
V+ TIR++LA+ A DL LEQLD+KT FLHGELEE IYM QP GF+ + KE++ C L
Sbjct: 875 VVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLT 934
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
KSLY LKQ+PR WYKRFDSF++ + + + D+C Y++
Sbjct: 935 KSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYK 972
Score = 95.9 bits (237), Expect(7) = e-175
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = +1
Query: 2872 KLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*TIMDKVRCLMMS 3051
K+K +RTDN E+ + +F+ C I+ V H PQQNGVAER+N T++++ R ++ +
Sbjct: 543 KIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKT 602
Query: 3052 SSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
+ + K FW EAV T Y+INRSPST I+ KT +E+
Sbjct: 603 AGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEM 637
Score = 94.0 bits (232), Expect(7) = e-175
Identities = 46/114 (40%), Positives = 71/114 (62%)
Frame = +2
Query: 2504 EKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTY 2683
E TM W +++GH+SE+ L L E+NLL G K L FC+HCV+ KQH+L F T +S +
Sbjct: 421 ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKH 480
Query: 2684 VLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWK 2845
+LD +H D+W ++ + YF+S +DD+SR + ++ +K K F F +K
Sbjct: 481 ILDLIHSDVWESPEL-SLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFK 533
Score = 64.3 bits (155), Expect(7) = e-175
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
+Q L+ EL + +Y DSQS LH+ +NP +H RT +I V+YHF+RE V G V++ K
Sbjct: 1214 MQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQK 1273
Query: 5181 ISTKYN 5198
I T N
Sbjct: 1274 IHTNDN 1279
Score = 53.1 bits (126), Expect(7) = e-175
Identities = 55/221 (24%), Positives = 81/221 (36%), Gaps = 4/221 (1%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFA---HQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXX 3328
W +P + S+L VFGC + Q+ LDP+S+K +F+GY VK Y++W
Sbjct: 638 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVV 697
Query: 3329 XXXXXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSD 3508
NEL Q TS ++
Sbjct: 698 VSRDVVFAENEL----------------------------------QSKQKNDSTSKETA 723
Query: 3509 VLASQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGYSYIVSYSF 3688
++ + K SK SD E P + Q D R+ R ++P + Y+++
Sbjct: 724 IVQMEEK-----SKESDSSEAEPVHEEQEPDDVNNGVRRSTRQTQKP-SWQSDYVMTSHD 777
Query: 3689 TAASYIEEKEPLCFLMC*RALIA-LCGCAMDEEMSSLHKNK 3808
EE EP F A AM EEM +LH+NK
Sbjct: 778 AYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNK 818
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 181 bits (460), Expect(5) = e-173
Identities = 126/385 (32%), Positives = 202/385 (52%), Gaps = 17/385 (4%)
Frame = +1
Query: 1393 SSEKYP-KSWKGEVLAEKFGDAHSCLILHLIDNVLREGEKDNTFEIWTK------LKKTI 1551
S E Y K K E L EK A S ++L + D VLR+ +K++T + K +
Sbjct: 53 SDEDYEEKLEKFEALEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKAL 112
Query: 1552 FREVLVE*NL--FKMSGSNSLFENIDDLNKIVLELQNVGEKISDENVAVILLNSLPESFN 1725
+ + L FKMS + S+ NID+ +I+ +L+N+ ISDE+ A++LL +LP++F+
Sbjct: 113 PNRIYPKQKLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFD 172
Query: 1726 DIKSAIKY--GRDGLTLSDVKNALKSKDLDL---RKENKFNGENFYIRRRVDHREXXXXX 1890
+K +KY G+ LTL +V A+ SK+L+L +K K E Y++ + +++
Sbjct: 173 QLKDTLKYSSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENK-GKGEQ 231
Query: 1891 XXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKIIKEE-KQRKQGKGINKSDKTHDFESGG 2067
C+ C +EGH ++ C K + KQ + KG + K + E+ G
Sbjct: 232 KGKGKGKKGKSKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAAG 291
Query: 2068 NSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWVSDFKTLNHGKVFLGNNQVCDIK 2247
YY LS + + D WILD+ C++HMT + W +F G V +GN V ++
Sbjct: 292 ---YYVSEALSSTEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVR 348
Query: 2248 DIGNVFIKMHNGMTRKLTEVRYVPDLRRNLISLGIFDSNAYK--SKNRIMKVCKGALVML 2421
+G + +K +G+T LT VRY+PD+ RNL+SLG F+ YK S++ I+++ G V+L
Sbjct: 349 GVGTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLL 408
Query: 2422 KGFKRDGLYHLIGKTVYEASALISK 2496
G + D LY L K V S + K
Sbjct: 409 TGRRYDTLYLLNWKPVASESLAVVK 433
Score = 160 bits (405), Expect(5) = e-173
Identities = 135/468 (28%), Positives = 202/468 (43%), Gaps = 31/468 (6%)
Frame = +2
Query: 2495 KLPEKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHK 2674
K + T+ W +++ H+S+K + L K L K+ LD C+ C+ GK + +F + H
Sbjct: 433 KRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHD 492
Query: 2675 STYVLDYVHCDLWGPKKVP-TYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCL 2851
+ L+Y+H DLWG VP + YF+S++DDF+R V ++ +KTKD+ FEKF EW L
Sbjct: 493 TKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNL 552
Query: 2852 GEN*TKIN*RQLGQITVLSF-------ITESLSICVHRIAFYIIGLLDIT--LNRMVL-- 2998
EN T + L L F ES+ I HR Y + +NR ++
Sbjct: 553 VENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEK 612
Query: 2999 LRG*IEPSWIRLGVL*CLQVFQNLFGEK-----L*VQLSTSSIDHLLQP*TSRLF*SCWS 3163
+R + S + + + E L + + SS + P WS
Sbjct: 613 VRSMLSDSGLP----------KRFWAEATHTTVLLINKTPSSALNFEIPDKK------WS 656
Query: 3164 REPPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWL----KCEPGXXX 3331
PP S L+ +GC F H +G L+PR+KKGV IGYP GVK YKVW+ KC
Sbjct: 657 GNPPVYSYLRRYGCVAFVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILDERKCVVSRNI 716
Query: 3332 XXXXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPE----TSG 3499
+ +L EN+ E +D +GS E E + G
Sbjct: 717 IFQENAVYKDL----------------MQRQENVSTEEDDQTGSYLEFDLEAERDVISGG 760
Query: 3500 KSDVL-----ASQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGY 3664
+++ P P +++++DDED Q+ Y L R R +R R P R+
Sbjct: 761 DQEMVNTIPAPESPVVSTPTTQDTNDDEDSDVNQSPL--SYHLVRDRDKREIRAPRRFDD 818
Query: 3665 SYIVSYSFTAASYIEEKEPLCFLMC-*RALIALCGCAMDEEMSSLHKN 3805
+ + E EP + A AMDEE+ S KN
Sbjct: 819 EDYYAEALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKN 866
Score = 155 bits (393), Expect(5) = e-173
Identities = 79/190 (41%), Positives = 117/190 (61%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIASH 4545
L F+MK LG+ +I GM I RDR+ L++SQ +L KI+ ++M KP T + +H
Sbjct: 1056 LGMRFEMKDLGAAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAH 1115
Query: 4546 F*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDHW 4725
F F + K ++ M ++PY A+ S+MY+M+ RPD+AY + ++SRFMS P ++HW
Sbjct: 1116 FKFQAATEQKLIRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHW 1175
Query: 4726 AALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLAG 4905
+ W+ +YI GT+ L Y S +F +VGY D+D+A+D D R+S T + FTL G
Sbjct: 1176 LGVKWVLRYIKGTLKTRLCYKK-SSSFSIVGYCDADYAADLDKRRSITGLV----FTLGG 1230
Query: 4906 NCIFWKSQLQ 4935
N I WKS LQ
Sbjct: 1231 NTISWKSGLQ 1240
Score = 137 bits (344), Expect(5) = e-173
Identities = 71/156 (45%), Positives = 100/156 (64%), Gaps = 3/156 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
K +V + Q++I C+WIF +F+ + K + Q EGID++ IF
Sbjct: 865 KNNTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAP 924
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
VK+ +IR++L+IVA DLELEQLD+KT FLHGEL+E IYM P G+E K + CLL
Sbjct: 925 VVKHVSIRVLLSIVAQEDLELEQLDVKTAFLHGELKEKIYMSPPEGYESMFKANEVCLLN 984
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLY 4259
K+LY LKQ+P+QW ++FD+FM + F+K YD+C Y
Sbjct: 985 KALYGLKQAPKQWNEKFDNFMKEICFVKSAYDSCAY 1020
Score = 71.2 bits (173), Expect(5) = e-173
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L+GLL + I+ DSQS + L KN V+HERT +IDVKYHFIRE +S G V + K
Sbjct: 1265 LKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTVEVLK 1324
Query: 5181 ISTKYNP 5201
IST+ NP
Sbjct: 1325 ISTEKNP 1331
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 177 bits (449), Expect(5) = e-172
Identities = 88/196 (44%), Positives = 129/196 (65%)
Frame = +1
Query: 4363 LLKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIAS 4542
LL SEFDMK LGS +I GM I+RDR LF+SQ+ +++K++ +F+M K VST IA
Sbjct: 1036 LLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAP 1095
Query: 4543 HF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDH 4722
HF S CP T+ E + M+ +PY A+ S+MY+M+ RPD++Y++SL+SR+MSNPG++H
Sbjct: 1096 HFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEH 1155
Query: 4723 WAALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLA 4902
W AL W+++Y+ GT L + L+GYVDSD+A+D D R+S T + FT+
Sbjct: 1156 WRALQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYV----FTIG 1209
Query: 4903 GNCIFWKSQLQPSVEL 4950
+ W++ LQ V L
Sbjct: 1210 SCAVSWRATLQSVVAL 1225
Score = 160 bits (405), Expect(5) = e-172
Identities = 126/405 (31%), Positives = 203/405 (50%), Gaps = 20/405 (4%)
Frame = +1
Query: 1315 WQI*LHNVRKKMKAVVVQ-NKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNV 1491
WQ+ M+ ++ Q + A+ + K W E + K A + + LHL +++
Sbjct: 19 WQV-------NMRGILAQTHDYDEALDNFGKRRAEWTAEEI-RKDQKALALIQLHLHNDI 70
Query: 1492 LREGEKDNTF-EIWTKLK-----KTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLE 1647
L+E + T E+W KL+ K + ++ ++ LF KM +S+ +I + KIV +
Sbjct: 71 LQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAEFKKIVAD 130
Query: 1648 LQNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDGLTLSDVKNALKSKD-LDLRKEN 1824
L ++ K DE++ ++LL SLP S+ + + I RD LTL +V +AL++K+ + + +N
Sbjct: 131 LVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQN 190
Query: 1825 ----KFNGENFYIRRRVDHR-EXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKI 1989
GE ++R R +++ C YC + H ++C K+
Sbjct: 191 DGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKV 250
Query: 1990 -IKEEKQRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTP 2166
KE K +K GK S D +SG + L + + D WILDS C+FH+
Sbjct: 251 QAKERKNKKDGKVSVASAAVSDDDSG------DCLVVFAGCVAGHDEWILDSACSFHICT 304
Query: 2167 NKHWVSDFKTLNHGKVF-LGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLIS 2343
++W S +K + G V +G++ C I IG+V IK +GMTR L VRY+P + RNLIS
Sbjct: 305 KRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLIS 364
Query: 2344 LGIFDSNAYK--SKNRIMKVCKGALVMLKG-FKRDGLYHLIGKTV 2469
L D+ YK + ++KV KG+LV LKG LY L G T+
Sbjct: 365 LSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 409
Score = 154 bits (390), Expect(5) = e-172
Identities = 81/158 (51%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
K +VP K+K I CKWIF A K++ + + + Q+ G+D+N +F
Sbjct: 847 KNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSP 906
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
VK+ +IR L+IVA +DLELEQLD+KT FLHGELEE IYM QP GF V KE C LK
Sbjct: 907 VVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLK 966
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
+SLY LKQSPRQW KRFDSFML F + YD+C+Y +
Sbjct: 967 RSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIK 1004
Score = 146 bits (369), Expect(5) = e-172
Identities = 134/467 (28%), Positives = 195/467 (41%), Gaps = 32/467 (6%)
Frame = +2
Query: 2501 PEKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKST 2680
P KT W ++GH+S + L ++NLL G + FC+HC+ GK ++ F H +
Sbjct: 424 PSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTK 483
Query: 2681 YVLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN 2860
LDYVH DLWGP K P+ Y L+++DD+SR V + LK KD TF F WK + E
Sbjct: 484 GTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIE- 542
Query: 2861 *TKIN*RQLGQITVLSFITESLSICVHRIAFYII-----------------GLLDITLNR 2989
RQ + L C H Y G+ + +NR
Sbjct: 543 ------RQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAE-RMNR 595
Query: 2990 MVLLRG*IEPSWIRLGVL*CLQVFQNLFGEKL*VQLSTSSIDHLLQ-----P*TSRLF*S 3154
++ R S R+ + + E + S+ +L+ P +
Sbjct: 596 TIISRARCMLSHARMN--------KRFWAE------AASTACYLINRSPSIPLNKKTPIE 641
Query: 3155 CWSREPPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXX 3334
WS P + S LKVFGC +AH G L+PR+ K +F+GY SGVK YK+W E G
Sbjct: 642 VWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTF 699
Query: 3335 XXXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVL 3514
FNE M E++P E E QV + +T + + +
Sbjct: 700 MSRSVVFNESVM-----------FTNSLPSEHVP-EKELQRMHMQVEHVDDDTGVQVEPV 747
Query: 3515 ASQP--KTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGYSYIVS-YS 3685
Q DV + DD + P Q D +++ +++R + P R +S Y+
Sbjct: 748 DEQDDHNNDVADDDAHDDVQQTPPI-LQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYA 806
Query: 3686 FTAASYIEE-KEPLCFLMC*RALIALCG------CAMDEEMSSLHKN 3805
+ A +E EP + R CG AM EEM SL KN
Sbjct: 807 LSCAEQVENVHEPATYKEAVR-----CGDSENWISAMHEEMQSLEKN 848
Score = 63.9 bits (154), Expect(5) = e-172
Identities = 29/67 (43%), Positives = 45/67 (67%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L+GL EL + S ++ DSQS ++L K+ ++HERT +ID+KYHF+R+ + G + + K
Sbjct: 1245 LKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCK 1304
Query: 5181 ISTKYNP 5201
I T NP
Sbjct: 1305 ICTHDNP 1311
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 170 bits (430), Expect(5) = e-162
Identities = 131/457 (28%), Positives = 201/457 (43%), Gaps = 24/457 (5%)
Frame = +2
Query: 2507 KTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTYV 2686
KT W ++GH+S L L K L+ +I+ L+FC+HCV+GK K++F +G H S
Sbjct: 436 KTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSEDA 495
Query: 2687 LDYVHCDLWG-PKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN* 2863
L YVH DLWG P P+ + YFLS++DD +R V ++ LK+KD+TF+KFCEWK L EN
Sbjct: 496 LSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQ 555
Query: 2864 TKIN*RQLGQITVLSFITESL-SICV------HRIAFYIIGLLDIT--LNRMVLLRG*IE 3016
+ L L F S C HR Y + +NR ++ + +
Sbjct: 556 VNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEK--VR 613
Query: 3017 PSWIRLGVL*CLQVFQNLFGEKL*VQLSTSSIDHLLQP*TSRLF*SCWSREPPNLSNLKV 3196
+ GV L + S+I+H + W P +L+
Sbjct: 614 CLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPE-------EMWLNRKPGYKHLRK 666
Query: 3197 FGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWL----KCEPGXXXXXXXXXXFNEL 3364
FG + HQ +G L PR+ KG F+GYP+G K YKVWL KC + +L
Sbjct: 667 FGSIAYVHQDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEEKCVISRNVVFQESVVYRDL 726
Query: 3365 DMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLA----SQPKT 3532
+ + + ++T+ S E SG V+ S+P T
Sbjct: 727 KV---------------KEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPIT 771
Query: 3533 DVPESKNSDDDEDHPEAQAQ-----ALRDYQLSRGRARRVHREPVRYGYSYIVSYSFTAA 3697
+ +S +S+++ ++ E + L Y+L+R R RR P R+ V+++
Sbjct: 772 EGEQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVV 831
Query: 3698 SYIEEKEPLCFLMC*RAL-IALCGCAMDEEMSSLHKN 3805
+EP + + A +EM SL KN
Sbjct: 832 ENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKN 868
Score = 152 bits (385), Expect(5) = e-162
Identities = 77/195 (39%), Positives = 121/195 (62%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIASH 4545
L +EF+MK +G SRI G++I RDR L +SQ +++K++ +F+M K + + +H
Sbjct: 1058 LSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAH 1117
Query: 4546 F*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDHW 4725
F K + + E+E D +PY A+ S+MY+M+ RPD+AY+I L+SR+MS PG HW
Sbjct: 1118 F---KLAAVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHW 1174
Query: 4726 AALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLAG 4905
A+ W+ +Y+ G D L++ D F + GY DS++A+D D R+S I +FT+ G
Sbjct: 1175 EAVKWVMRYLKGAQDLNLVFTKEKD-FTVTGYCDSNYAADLDRRRS----ISGYVFTIGG 1229
Query: 4906 NCIFWKSQLQPSVEL 4950
N + WK+ LQP V +
Sbjct: 1230 NTVSWKASLQPVVAM 1244
Score = 142 bits (357), Expect(5) = e-162
Identities = 107/361 (29%), Positives = 165/361 (45%), Gaps = 14/361 (3%)
Frame = +1
Query: 1429 VLAEKFGDAHSCLILHLIDNVL-REGEKDNTFEIWTKLKKTIFREVL-------VE*NLF 1584
V E+ A + +I H+ D VL + T ++W L K L ++ F
Sbjct: 74 VKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQLKLYSF 133
Query: 1585 KMSGSNSLFENIDDLNKIVLELQNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDGL 1764
KM + ++ +N+D+ +IV EL ++ ++ +E A+++LNSLP S +K +KYG L
Sbjct: 134 KMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNKTL 193
Query: 1765 TLSDVKNALKSKDLDLRKE---NKFNGENFYIRRRVDHR-EXXXXXXXXXXXXXXXXXXX 1932
T+ DV ++ KS + +L + +K Y R
Sbjct: 194 TVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTK 253
Query: 1933 XXCFYCCKEGHIKNKCFKIIKEEKQRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRSPS 2112
C+YC KEGH+K C+ K+ + QG+ ++K E+ LS +
Sbjct: 254 VPCWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEA-----------LSVNEQ 302
Query: 2113 SVSDNWILDSDCTFHMTPNKHWVSDFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHNGMTR 2292
V D WILDS CT HMT + W F+ + + LG++ + + G + I H G +
Sbjct: 303 MVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIK 362
Query: 2293 KLTEVRYVPDLRRNLISLGIFDSNAYKSKNRIMKV--CKGALVMLKGFKRDGLYHLIGKT 2466
L V+YVP LRRNLIS G D Y+ + KV K L+G +GLY L G T
Sbjct: 363 ILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDGST 422
Query: 2467 V 2469
V
Sbjct: 423 V 423
Score = 136 bits (343), Expect(5) = e-162
Identities = 72/152 (47%), Positives = 98/152 (64%), Gaps = 3/152 (1%)
Frame = +3
Query: 3819 LVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF---VKYKT 3989
LV K +K+I C+W+F ++F+ + K + Q EG+D+ IF VK+ +
Sbjct: 873 LVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVS 932
Query: 3990 IRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLKKSLYRL 4169
IRI++++V DLELEQ+D+KT FLHG+LEE +YM QP GF S E+ C LKKSLY L
Sbjct: 933 IRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGL 992
Query: 4170 KQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
KQSPRQW KRFD FM FI+ +D C+Y +
Sbjct: 993 KQSPRQWNKRFDRFMSSQQFIRSEHDACVYVK 1024
Score = 65.9 bits (159), Expect(5) = e-162
Identities = 32/67 (47%), Positives = 47/67 (70%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
++GLL ++ + K I+ DSQS + L KN VYHERT +IDV++++IR+ V SG V++ K
Sbjct: 1264 IKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVLK 1323
Query: 5181 ISTKYNP 5201
I T NP
Sbjct: 1324 IHTSRNP 1330
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 181 bits (460), Expect(5) = e-157
Identities = 121/374 (32%), Positives = 189/374 (50%), Gaps = 17/374 (4%)
Frame = +1
Query: 1426 EVLAEKFGDAHSCLILHLIDNVLREGEKDNTFEIWTKLKKTIF------REVLVE*NLF- 1584
++L EK G A S +IL L +NVLR+ K T K+ +F + ++ L+
Sbjct: 70 KILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQRLYG 129
Query: 1585 -KMSGSNSLFENIDDLNKIVLELQNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDG 1761
KMS + ++ EN++D K++ +L+NV + DE+ A++LL SLP F+ +K +KY +
Sbjct: 130 YKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKTT 189
Query: 1762 LTLSDVKNALKSKDLDLRKENKF---NGENFYIRRRVDHREXXXXXXXXXXXXXXXXXXX 1932
L L ++ +A++SK L+L K N + +++ R E
Sbjct: 190 LHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDR-GRSETRGKGPNKNKSRSKSKGAG 248
Query: 1933 XXCFYCCKEGHIKNKCFKIIKEEKQRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRS-- 2106
C+ C KEGH K +C+ + KQ + S T L +SR+
Sbjct: 249 KTCWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAA------ALVVSRALL 302
Query: 2107 --PSSVSDNWILDSDCTFHMTPNKHWVSDFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHN 2280
D WILD+ C+FHMT K W+ DFK GKV +GN+ ++K IG+V IK +
Sbjct: 303 GFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNED 362
Query: 2281 GMTRKLTEVRYVPDLRRNLISLGIFDSNA--YKSKNRIMKVCKGALVMLKGFKRDGLYHL 2454
G T LT+VRY+P++ +NLISLG + ++SK I+ + K L +L G K LY L
Sbjct: 363 GSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFL 422
Query: 2455 IGKTVYEASALISK 2496
G T+ + +I K
Sbjct: 423 QGTTLAGEANVIDK 436
Score = 143 bits (361), Expect(5) = e-157
Identities = 79/195 (40%), Positives = 111/195 (56%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIASH 4545
L EF+MK LG +I GM I R+R L +SQ+ ++ ++ F M K T + +H
Sbjct: 1042 LNREFEMKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAH 1101
Query: 4546 F*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDHW 4725
F + + + M +PY AI S+MYSMI RPD+AY + ++SRFMS P ++HW
Sbjct: 1102 FKLRAANEKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHW 1161
Query: 4726 AALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLAG 4905
A+ W+ +Y+ GT D L + D FE+ GY DSD+A+D D R+S T + FT G
Sbjct: 1162 QAVKWVMRYMKGTQDTCLRFKK-DDKFEIRGYCDSDYATDLDRRRSITGFV----FTAGG 1216
Query: 4906 NCIFWKSQLQPSVEL 4950
N I WKS LQ V L
Sbjct: 1217 NTISWKSGLQRVVAL 1231
Score = 135 bits (339), Expect(5) = e-157
Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 3/150 (2%)
Frame = +3
Query: 3819 LVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF---VKYKT 3989
++ K +++I CKWIF +++ + K F Q EGID+ IF VK+ +
Sbjct: 857 VIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVS 916
Query: 3990 IRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLKKSLYRL 4169
IR +L+IV +D+ELEQLD+KT FLHG L+E I M QP G+E + CLLKKSLY L
Sbjct: 917 IRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGL 976
Query: 4170 KQSPRQWYKRFDSFMLKAGFIKRNYDNCLY 4259
KQSPRQW +RFDSFM+ +G+ + Y+ C+Y
Sbjct: 977 KQSPRQWNQRFDSFMINSGYQRSKYNPCVY 1006
Score = 122 bits (306), Expect(5) = e-157
Identities = 114/458 (24%), Positives = 190/458 (41%), Gaps = 21/458 (4%)
Frame = +2
Query: 2495 KLPEKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHK 2674
K ++T W ++GHI K L L K L K ++F H
Sbjct: 436 KEKDETSLWHSRLGHIGAKGLQVLVSKGHL----------------DKNIMISFGAAKHV 479
Query: 2675 STYVLDYVHCDLWGPKKVP-TYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCL 2851
+ LDYVH DLWG VP + YF++ +DDF+R I+ ++TKD+ F KF EWK
Sbjct: 480 TKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRTKDEAFSKFVEWKTQ 539
Query: 2852 GEN*TKIN*RQLGQITVLSFITESLS-------ICVHRIAFYIIGLLDIT--LNRMVLLR 3004
EN + L L F + + HR Y + +NR ++ +
Sbjct: 540 IENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNRTIMNK 599
Query: 3005 G*IEPSWIRLGVL*CLQVFQNLFGEKL*VQLSTSSIDHLLQP*TSRLF*SC----WSREP 3172
+ C+ + ++ G++ + +++++ + + +S + W+ P
Sbjct: 600 ------------VRCM-LSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGHP 646
Query: 3173 PNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWL----KCEPGXXXXXX 3340
P+ LK FG + H +G L+PR+KKG+F+GYP GVK +KVWL KC
Sbjct: 647 PDYKILKKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVWLLEDRKCVVSRDIVFQ 706
Query: 3341 XXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLAS 3520
+ EL + E +E+++ S + + + S + +
Sbjct: 707 ENQMYKEL-----QKNDMSEEDKQLTEVERTLIELKNLSADDENQSEGGDNSNQEQASTT 761
Query: 3521 QPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRY--GYSYIVSYSFTA 3694
+ + + + +D D+D L +Y L+R R RR R P R+ +V ++ T
Sbjct: 762 RSASKDKQVEETDSDDD-------CLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTM 814
Query: 3695 ASYIEEKEPLCFLMC*RA-LIALCGCAMDEEMSSLHKN 3805
E EP + R+ A EEM S+ KN
Sbjct: 815 TEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKN 852
Score = 70.1 bits (170), Expect(5) = e-157
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L+GL E+ + DSQS + L KN V+HERT +IDV+YHFIREK++ G + + K
Sbjct: 1251 LRGLAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVK 1310
Query: 5181 ISTKYNP 5201
IST +NP
Sbjct: 1311 ISTTWNP 1317
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 169 bits (429), Expect(5) = e-155
Identities = 89/205 (43%), Positives = 128/205 (62%)
Frame = +1
Query: 4336 EIRLLVQISLLKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLY 4515
EI L Q LL SEF+MK LG+ +I GM I RDR L++SQ +++K++ F M
Sbjct: 1326 EINKLKQ--LLSSEFEMKDLGAAKKILGMEIWRDRDAGLLYVSQQKYIEKLMQAFHMDHS 1383
Query: 4516 KPVSTSIASHF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSR 4695
KPVST +A HF F + P T+ E + M ++PY + S+MY+M+ RPD+A+++S++SR
Sbjct: 1384 KPVSTPLAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSR 1443
Query: 4696 FMSNPGRDHWAALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSR 4875
FMSNPG+ HW A+ W+ +Y+ G+ L+Y N + LVG+ DSD D R+S T
Sbjct: 1444 FMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNGDVSSGLVGFTDSDHGGDLMKRRSLTCY 1503
Query: 4876 ILNNLFTLAGNCIFWKSQLQPSVEL 4950
I FTL G I W++ LQP+V L
Sbjct: 1504 I----FTLFGCAISWRASLQPTVAL 1524
Score = 162 bits (409), Expect(5) = e-155
Identities = 129/455 (28%), Positives = 210/455 (46%), Gaps = 22/455 (4%)
Frame = +2
Query: 2510 TMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTYVL 2689
T W R++GH+SEK L L ++ LL G + L FC+ CV+GKQ ++ F +G+H + VL
Sbjct: 745 TELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVL 804
Query: 2690 DYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN*TK 2869
+Y+H DLWGP V +++ Y+++ +DDFSR V ++ LK KD+ F KF EWK + E T
Sbjct: 805 EYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTG 864
Query: 2870 IN*RQLGQITVLSFITESL-------SICVHRIAFYIIGLLDIT--LNRMVLLRG*IEPS 3022
+ L L F + I HR + + +N+ ++ R
Sbjct: 865 KVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRA----- 919
Query: 3023 WIRLGVL*CLQVFQNLFGEKL*VQLSTSSIDHLLQP*TSRLF*S---CWSREPPNLSNLK 3193
C+++ L + ++T++ P T+ F + WS +P N S LK
Sbjct: 920 -------RCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLK 972
Query: 3194 VFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXXXXXXXFNELDMP 3373
+FGC +AH +G L+PR+ K +F+GY +GVK Y++W + F+E M
Sbjct: 973 IFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAM- 1031
Query: 3374 CFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLASQP---KTDVPE 3544
F + E D +G+S K+D+ A+Q + D P
Sbjct: 1032 -FGQRK----------------EFGDLAGTS-----------KTDLGANQKVEFEVDAP- 1062
Query: 3545 SKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRY------GYSYIVSYSFTAASYI 3706
+N DD + ++ R RR R P+RY + V+++ A I
Sbjct: 1063 MENGVDDTSEEQPVIDQNDSQSIAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEI 1122
Query: 3707 EEKEPLCFLMC*RALIALCG-CAMDEEMSSLHKNK 3808
+EP + + + +MD+EM+SL KN+
Sbjct: 1123 GREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQ 1157
Score = 138 bits (347), Expect(5) = e-155
Identities = 73/156 (46%), Positives = 97/156 (62%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIFVK 3980
K + LVP K +DCKW+F K++ + K F V VK
Sbjct: 1155 KNQTWELVPLPEGVKPVDCKWLFKIKDGISEDEPPKYKSRLVAKVFSPV---------VK 1205
Query: 3981 YKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLKKSL 4160
+K+IR++LA+V+ ++LEL+QLD+KT FLHG LEE IYM QP GF K C LKKSL
Sbjct: 1206 HKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSL 1265
Query: 4161 YRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFRS 4268
Y LKQSPRQWYKRFD+FM+ F++ YD+C+YF++
Sbjct: 1266 YGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKT 1301
Score = 103 bits (257), Expect(5) = e-155
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Frame = +1
Query: 1939 CFYCCKEGHIKNKCFKIIKEEKQRKQGKGIN--------------KSDKTHDFESGGNSM 2076
CF+C ++GH + C ++Q+ G G+ K D + + E G
Sbjct: 556 CFHCKEKGHFRKNC-----PQRQKGIGSGVGMEIAQVVVAQKYXEKXDSSDEGEGGD--- 607
Query: 2077 YYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWVSDFKTLNHGKVFLGNNQVCDIKDIG 2256
L+ S SS +++WILD+ ++HM ++ + FK N G V LG++ +K G
Sbjct: 608 -----VLTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEWN-GSVKLGDDGELGVKGSG 661
Query: 2257 NVFIKMHNGMTRKLTEVRYVPDLRRNLISLGIFDSNAY--KSKNRIMKVCKGALVMLKGF 2430
+V IKM++G+ R L YVP LR+NLIS+G D N Y +++V KGALV++KG
Sbjct: 662 SVQIKMYDGLVRTLN-AWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGR 720
Query: 2431 KRDGLYHLIGKTVYEASAL 2487
+ G+Y L+G +V +A+
Sbjct: 721 LQHGIYTLMGSSVLGTAAV 739
Score = 69.7 bits (169), Expect(5) = e-155
Identities = 36/67 (53%), Positives = 46/67 (68%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L G L L + SK VIY DSQS L L KNPVYHERT +IDV+ +FIR+ + L +I K
Sbjct: 1544 LNGFLGSLGLNLSKPVIYCDSQSALCLAKNPVYHERTKHIDVRLNFIRDVIEEKLFSIEK 1603
Query: 5181 ISTKYNP 5201
++T+ NP
Sbjct: 1604 VATEVNP 1610
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 156 bits (395), Expect(5) = e-154
Identities = 86/202 (42%), Positives = 123/202 (60%), Gaps = 4/202 (1%)
Frame = +1
Query: 4357 ISLLKSE----FDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPV 4524
IS LK E FDMK LG+ RI GM I R+R + +L++SQN +L KI+ ++M K V
Sbjct: 1026 ISQLKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHV 1085
Query: 4525 STSIASHF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMS 4704
T + +H + K E ++ M +IPY A+ S+MY+MI RPD+AY + ++SR+MS
Sbjct: 1086 VTPLGAHLKMRAATVEKQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMS 1145
Query: 4705 NPGRDHWAALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILN 4884
P R+HW + W+ +YI G++ L Y SD F++VGY D+D A+ KD R+S T +
Sbjct: 1146 QPAREHWLGVKWVLRYIKGSLGTKLQYKRSSD-FKVVGYCDADHAACKDRRRSITGLV-- 1202
Query: 4885 NLFTLAGNCIFWKSQLQPSVEL 4950
FTL G+ I WKS Q V L
Sbjct: 1203 --FTLGGSTISWKSGQQRVVAL 1222
Score = 147 bits (372), Expect(5) = e-154
Identities = 129/468 (27%), Positives = 192/468 (41%), Gaps = 31/468 (6%)
Frame = +2
Query: 2495 KLPEKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHK 2674
K + T+ W R++GH+S+K + L +K LL K+ L+ C+ C+ GK ++ F + H
Sbjct: 411 KRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRIGFNLAQHD 470
Query: 2675 STYVLDYVHCDLWGPKKVP-TYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCL 2851
+ L+YVH DLWG VP + YF+S +DD++R V I+ LKTKD+ F+KF EW L
Sbjct: 471 TREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANL 530
Query: 2852 GEN*TKIN*RQLGQITVLSFITESL-------SICVHRIAFYIIGLLDIT--LNRMVLLR 3004
EN T + L L F S I HR Y + +NR ++
Sbjct: 531 VENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNRTLM-- 588
Query: 3005 G*IEPSWIRLGVL*CLQVFQNLFGEKL*VQLSTSSIDHLLQP*TSRLF*SCWSREPPNLS 3184
EK+ LS S + + ++ P +
Sbjct: 589 ------------------------EKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSAL 624
Query: 3185 NLKV-----------------FGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKC 3313
N +V FGC F H +G L+PR+KKG+ +GYP GVK YK+WL
Sbjct: 625 NYEVPDKRWSGKSPIYSYLRRFGCIAFVHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLE 684
Query: 3314 EPGXXXXXXXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPET 3493
E N ++K + ++++ E T
Sbjct: 685 EKKCVVSRNVIFQENASYKDMMQSKDAEKDENEAPPSSYLDLDLDH---------EEVIT 735
Query: 3494 SGKSD--VLASQPKTDVPESKNSDDDEDHPEAQ-AQALRDYQLSRGRARRVHREPVRYGY 3664
SG D V A P P + + + + E Q+ YQL R R RR R PVR+
Sbjct: 736 SGGDDPIVEAQSPFNPSPATTQTYSEGVNSETDIIQSPLSYQLVRDRDRRTIRAPVRFDD 795
Query: 3665 SYIVSYSFTAASYIEEKEPLCFLMC*RAL-IALCGCAMDEEMSSLHKN 3805
++ + E EP + R++ AM+EEM S KN
Sbjct: 796 EDYLAEALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKN 843
Score = 146 bits (369), Expect(5) = e-154
Identities = 114/404 (28%), Positives = 196/404 (48%), Gaps = 16/404 (3%)
Frame = +1
Query: 1333 NVRKKMKAVVVQNKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNVLREGEKD 1512
+V K + +V+ + E+ + + E+L EK A S ++L + D VLR+ +K+
Sbjct: 34 SVALKEEDDLVEKVAEMQLTEEEEKEEVLRRELLEEKRRKARSAIVLSVTDRVLRKIKKE 93
Query: 1513 NT----FEIWTKL--KKTIFREVLVE*NL--FKMSGSNSLFENIDDLNKIVLELQNVGEK 1668
+ + KL K + + + L FKMS + S+ NID+ +I+ +L+N
Sbjct: 94 QSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFKMSENLSIEGNIDEFLRIIADLENTNVL 153
Query: 1669 ISDENVAVILLNSLPESFNDIKSAIKYGRDGLTLS--DVKNALKSKDLDL---RKENKFN 1833
+SDE+ A++LL SLP+ F+ ++ +KYG +TLS +V A+ SK+L+L +K K
Sbjct: 154 VSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEVVAAIYSKELELGSNKKSIKGQ 213
Query: 1834 GENFYIRRRVDHREXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCFKIIKEEKQRK 2013
E +++ + + R + G+ N K + + + K
Sbjct: 214 AEGLFVKEKTETRGRTE-----------------------QRGNNNNN--KKSRSKSRSK 248
Query: 2014 QGKGI-NKSDKTHDFESGGNSMYYEVLCLSRSPSSVSDNWILDSDCTFHMTPNKHWVSDF 2190
+G I +S S N +Y LS + + D W++D+ C++HMT + W D
Sbjct: 249 KGCWICGESSNGSSNYSEANGLYVSE-ALSSTDIHLEDEWVMDTGCSYHMTYKREWFEDL 307
Query: 2191 KTLNHGKVFLGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRNLISLGIFDSNAY 2370
G V +GN V ++ IG + +K GM +LT VRY+P++ RNL+SLG F+ + Y
Sbjct: 308 NEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGY 367
Query: 2371 --KSKNRIMKVCKGALVMLKGFKRDGLYHLIGKTVYEASALISK 2496
K +N + + G V+L + LY L + V E S + K
Sbjct: 368 SFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPVTEESLSVVK 411
Score = 130 bits (327), Expect(5) = e-154
Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 3/158 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
K +V + QK+I +WI+ +F+ + K + Q +GID++ IF
Sbjct: 842 KNHTWTVVKRPQHQKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAP 901
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
VK+ +IRI+++IVA DLELEQLD+KT FLHGEL+E IYM P G+E KE CLL
Sbjct: 902 VVKHVSIRILMSIVAQEDLELEQLDVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLN 961
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
KSLY LKQ+P+QW ++F+++M + GFI+ YD+C Y +
Sbjct: 962 KSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYDSCAYIK 999
Score = 59.3 bits (142), Expect(5) = e-154
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
++GLL E I+ DSQS + L KN V+HERT +IDV+Y +IR+ +++G ++ K
Sbjct: 1242 MKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRDIIANGDGDVVK 1301
Query: 5181 ISTKYNP 5201
I T+ NP
Sbjct: 1302 IDTEKNP 1308
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 159 bits (402), Expect(5) = e-144
Identities = 129/428 (30%), Positives = 182/428 (42%), Gaps = 19/428 (4%)
Frame = +2
Query: 2504 EKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTY 2683
EKT W ++GH+S + L EK LL I L FC++CV+GK KL+F +G H +
Sbjct: 436 EKTELWHCRLGHMSLNNMKILAEKGLLEKKDIKELSFCENCVMGKSKKLSFNVGKHITDE 495
Query: 2684 VLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN* 2863
VL Y+H DLWG + YFLS++DD SR V + LKTKD+TFE+FCEWK L EN
Sbjct: 496 VLGYIHADLWGKQ---------YFLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQ 546
Query: 2864 TKIN*RQLGQITVLSF-------ITESLSICVHRIAFYIIGLLDIT--LNRMVLLR---- 3004
+ L L F + I HR Y + +NR ++ +
Sbjct: 547 VNKKVKILRTDNGLEFCNLKFDEFCKQNGIERHRTCTYTPQQNGVAKRMNRTLMEKVRCL 606
Query: 3005 ----G*IEPSWIRLGVL*CLQVFQNLFGEKL*VQLSTSSIDHLLQP*TSRLF*SCWSREP 3172
G E W V ++ S++DH + W +
Sbjct: 607 LNESGLEEVFWAEAAATAAYLVNRS----------PASAVDHNVPE-------ELWLDKK 649
Query: 3173 PNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXXXXXXX 3352
P +L+ FGC + H +G L PR+ KGVF+GYP G K YKVWL E
Sbjct: 650 PGYKHLRRFGCIAYVHLDQGKLKPRALKGVFLGYPQGTKGYKVWLLDE--EKCVISRNIV 707
Query: 3353 FNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSS--QVHTHEPETSGKSDVLASQP 3526
FNE + E ++ D G + QV E K+ + +
Sbjct: 708 FNENQV----------YKDIRESSEQSVKDISDLEGYNEFQVSVKEHGECSKTGGVTIEE 757
Query: 3527 KTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRYGYSYIVSYSFTAASYI 3706
+S+NS E P + L +YQ +R R RR P + + + A I
Sbjct: 758 IDQESDSENSVTQE--PLIASIDLSNYQSARDRERRAPNPPQKLADYTHFALALVMAEEI 815
Query: 3707 EEKEPLCF 3730
E +EP C+
Sbjct: 816 ESEEPQCY 823
Score = 144 bits (364), Expect(5) = e-144
Identities = 110/362 (30%), Positives = 168/362 (46%), Gaps = 18/362 (4%)
Frame = +1
Query: 1438 EKFGDAHSCLILHLIDNVLREGEKDNTF-EIWTKLKKTIFREVLVE*NL--------FKM 1590
E+ A + +I H+ D VL + + T E+W L K +F E + + FKM
Sbjct: 79 EQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNK-LFMETSLPNRIYTQLRLYSFKM 137
Query: 1591 SGSNSLFENIDDLNKIVLELQNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDGLTL 1770
+ S+ +N D+ +IV EL ++ ++ +E A+++LNSLP S+ +K +KYG L++
Sbjct: 138 VDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSYIQLKHTLKYGNKTLSV 197
Query: 1771 SDVKNALKSKDLDLRKENKF----NGENFYIRRRVDHREXXXXXXXXXXXXXXXXXXXXX 1938
DV ++ KS + +L ++ + Y R +
Sbjct: 198 QDVVSSAKSLERELSEQKETIRAPASTALYTAER-GRPQTKNTQGQGKGRGRSNSKSRLT 256
Query: 1939 CFYCCKEGHIKNKCFKIIKEEKQRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRSPSSV 2118
C++C KEGH+K C+ ++ + QGK ++K +Y E L S
Sbjct: 257 CWFCKKEGHVKKDCYAGKRKLENEGQGKAGVITEKL---------VYSEAL--SMYDQEA 305
Query: 2119 SDNWILDSDCTFHMTPNKHWVSDFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHNGMTRKL 2298
D W++DS CT+HMT W S+F + LG++ + K G V + H G R L
Sbjct: 306 KDKWVIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTVESKGSGTVKVNTHGGSIRVL 365
Query: 2299 TEVRYVPDLRRNLISLGIFDSNAYK-----SKNRIMKVCKGALVMLKGFKRDGLYHLIGK 2463
VR+VP+LRRNLIS G D YK K R K K AL G +GLY L G
Sbjct: 366 KNVRFVPNLRRNLISTGTLDKLGYKHEGGDGKVRFYKENKTALC---GNLVNGLYVLDGH 422
Query: 2464 TV 2469
TV
Sbjct: 423 TV 424
Score = 132 bits (331), Expect(5) = e-144
Identities = 68/157 (43%), Positives = 103/157 (65%), Gaps = 3/157 (1%)
Frame = +3
Query: 3804 TKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF--- 3974
T ++V PK +QK+I C+W+F +++ + + F Q +GID+ +F
Sbjct: 851 TWDIVEWPK--EQKVISCRWLFKLKPGIPGVEAQRYKARLVARGFTQQKGIDYEEVFAPV 908
Query: 3975 VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLKK 4154
VK+ +IRI+++ V D+ELEQ+D+KT FLHGEL++ +YM QP GFEV ++ CLLKK
Sbjct: 909 VKHISIRILMSAVVKDDMELEQMDVKTTFLHGELDQVLYMEQPEGFEVNPEKDQVCLLKK 968
Query: 4155 SLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
SLY LKQ+PRQW K+F +FML F + +D+C+Y +
Sbjct: 969 SLYGLKQAPRQWNKKFHAFMLSLQFARSEHDSCVYVK 1005
Score = 112 bits (281), Expect(5) = e-144
Identities = 72/195 (36%), Positives = 103/195 (52%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIASH 4545
L +F+MK +G+ SRI G++I R+R + +L +SQ ++ K++ +F M K VST + +H
Sbjct: 1039 LSLKFEMKDMGAASRILGIDIIRNRKEGTLRLSQTRYVDKVIQRFRMADAKVVSTPMGAH 1098
Query: 4546 F*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDHW 4725
F K + E D +PY A+ SVMY+MI PD+AY++ L+SRFMS PG
Sbjct: 1099 F---KLTSLIDEIGSVDPEVVPYSSAVGSVMYAMIGTIPDVAYAMGLVSRFMSRPGA--- 1152
Query: 4726 AALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLAG 4905
N E+ GY DSD A+D D R+S I +FT+ G
Sbjct: 1153 -------------------------NLEVQGYCDSDHAADLDKRRS----ISGYVFTVGG 1183
Query: 4906 NCIFWKSQLQPSVEL 4950
N + WKS LQ V L
Sbjct: 1184 NTVSWKSSLQHVVAL 1198
Score = 59.3 bits (142), Expect(5) = e-144
Identities = 26/67 (38%), Positives = 45/67 (67%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
++GLL ++ + A ++ DSQS + L KN +H+RT +++VK++FIR+ + +G V + K
Sbjct: 1218 IRGLLEDMGLQPKPATVWCDSQSAICLSKNNAFHDRTKHVEVKFYFIRDIIEAGEVKVRK 1277
Query: 5181 ISTKYNP 5201
I T NP
Sbjct: 1278 IHTSVNP 1284
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 163 bits (413), Expect(4) = e-142
Identities = 122/431 (28%), Positives = 187/431 (43%), Gaps = 26/431 (6%)
Frame = +2
Query: 2507 KTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTYV 2686
KT W ++GHI + L K L+ ++I LDFC++CV+GK K++F +G H S V
Sbjct: 446 KTELWHSRLGHIGLNNMKVLAGKGLVSKEEIRVLDFCENCVMGKAKKVSFNVGKHNSEDV 505
Query: 2687 LDYVHCDLWGPKKV-PTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN* 2863
L YVH DLWG V P+ + N YFLS++DD +R V ++ L++KD+TF++FCEWK L EN
Sbjct: 506 LRYVHADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQ 565
Query: 2864 TKIN*RQLGQITVLSFIT-------ESLSICVHRIAFYIIGLLDIT--LNRMVLLR---- 3004
+ L L F + I H+ Y + +NR ++ +
Sbjct: 566 QNKKVKCLRTDNGLEFCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVRCM 625
Query: 3005 ----G*IEPSWIRLGVL*CLQVFQNLFGEKL*VQLSTSSIDHLLQP*TSRLF*SCWSREP 3172
G E W + ++ S+IDH + W +
Sbjct: 626 LNESGLGEEFWAEAAATAAYLINRS----------PASAIDHNVPE-------ELWLNKK 668
Query: 3173 PNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXXXXXXX 3352
P +L+ FG + H +G L PR+ KG+FIGYP+G K YK+WL E
Sbjct: 669 PGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPAGTKGYKIWLLEEHKCVISRNVLFH 728
Query: 3353 FNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLASQPKT 3532
+ K + E S S+ + P +V+ +
Sbjct: 729 EESVYKDTMKKERVV----------ESEAEPASHSKSTLIKVKTPGNLNSGEVI---QVS 775
Query: 3533 DVPESKNSDDDEDHPEAQAQ--------ALRDYQLSRGRARRVHREPVRYGYSYIVSYSF 3688
D ES S ++E PE Q + +L +YQL+R R RR P R+ V+++
Sbjct: 776 DEEESDESVEEEQEPETQVELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFAL 835
Query: 3689 TAASYIEEKEP 3721
+ +EP
Sbjct: 836 VTVETLSMEEP 846
Score = 143 bits (360), Expect(4) = e-142
Identities = 74/190 (38%), Positives = 115/190 (60%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIASH 4545
L EF+MK +G SRI G++I RD + L +SQ ++ +V +F+M K + I +H
Sbjct: 1065 LSMEFEMKDMGPASRILGIDIIRDMKNGVLRMSQASYIHNVVQRFNMAEAKVTRSPIGAH 1124
Query: 4546 F*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDHW 4725
F K + + ++E D +PY A+ S+MY+MI IRPD+AY I L+SR+M+ PG HW
Sbjct: 1125 F---KLAAVRDDDECIDNNAVPYASAVGSIMYAMIGIRPDLAYVICLVSRYMARPGSIHW 1181
Query: 4726 AALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLAG 4905
A+ W+ +Y+ G+ D L++ F + GY DSD+A+D D R+S + + FT+ G
Sbjct: 1182 EAVKWILRYMRGSQDLNLVFTK-EKEFRVTGYCDSDYAADLDRRRSVSGYV----FTVGG 1236
Query: 4906 NCIFWKSQLQ 4935
N + WK+ LQ
Sbjct: 1237 NTVSWKANLQ 1246
Score = 137 bits (346), Expect(4) = e-142
Identities = 103/363 (28%), Positives = 167/363 (46%), Gaps = 16/363 (4%)
Frame = +1
Query: 1429 VLAEKFGDAHSCLILHLIDNVLREGEK-DNTFEIWTKLKKTIFREVL-------VE*NLF 1584
V EK +A + +I H+ D VLR+ + + E+W L K L ++ F
Sbjct: 82 VKIEKSENAMNIIIAHVGDAVLRKIDHCKSAAEMWETLNKQYMETSLPNRIYVQLKFYSF 141
Query: 1585 KMSGSNSLFENIDDLNKIVLELQNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDGL 1764
KM+ + S+ EN+++ KIV EL ++ + +E A++ LN L ++ +K +KYG L
Sbjct: 142 KMNDTKSINENVNEFLKIVAELSSLEINVVEEVRAILFLNRLSSRYSQLKHTLKYGNKAL 201
Query: 1765 TLSDVKNALKSKDLDLRKENKFNGENFYI------RRRVDHREXXXXXXXXXXXXXXXXX 1926
+L DV +A +S + +L ++ + + + R +
Sbjct: 202 SLKDVISAARSLERELNEQKETDKNTSTVLYTNERSRPQTRNQNHNKGGQGRGRSKSNSN 261
Query: 1927 XXXXCFYCCKEGHIKNKCFKIIKEEKQRKQGKGINKSDKTHDFESGGNSMYYEVLCLSRS 2106
C+YC KEGH+K F ++ + G+ ++K E+ LS +
Sbjct: 262 AKLTCWYCKKEGHVKKDYFARKRKLESENPGEAGVITEKLVFSEA-----------LSVN 310
Query: 2107 PSSVSDNWILDSDCTFHMTPNKHWVSDFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHNGM 2286
+V D W+LDS CT HM+ + W F+ + LG++ + G++ I+ H G
Sbjct: 311 DLAVRDIWVLDSGCTSHMSARRDWFCSFREDGGPTILLGDDHSVKSQGQGSIKIETHGGT 370
Query: 2287 TRKLTEVRYVPDLRRNLISLGIFDSNAYKSKNRIMKV--CKGALVMLKGFKRDGLYHLIG 2460
L V+YVP+LRRNLIS G D YK + KV K L+G +GLY L G
Sbjct: 371 IIGLENVKYVPELRRNLISTGTLDKRGYKHEGGDGKVRYFKNQKTALRGELVNGLYILDG 430
Query: 2461 KTV 2469
TV
Sbjct: 431 NTV 433
Score = 135 bits (341), Expect(4) = e-142
Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF-- 3974
K VLV K +K+I C+W+F +++ Q K + EG+D+ IF
Sbjct: 874 KNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHREGVDYQEIFAL 933
Query: 3975 -VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
VK+ +IRI++++V DLELEQ+D+KT FLHGELEE +YM QP G + E+ CLLK
Sbjct: 934 VVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGCISEDGENKVCLLK 993
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
KSLY LKQSPRQW KRF+ FM+ FI+ +D C+Y +
Sbjct: 994 KSLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVK 1031
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 160 bits (405), Expect(4) = e-128
Identities = 124/436 (28%), Positives = 189/436 (43%), Gaps = 31/436 (7%)
Frame = +2
Query: 2507 KTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTYV 2686
KT W ++GH+ + L K L+ ++I LDFC++CV+GK K++F +G H S YV
Sbjct: 346 KTELWHSRLGHMGLNNMKVLAGKGLVSKEEIRELDFCENCVMGKAKKVSFNMGKHNSEYV 405
Query: 2687 LDYVHCDLWGPKKV-PTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN* 2863
L YVH DLWG V P+ + N YFLS++DD +R V ++ L++KD+TF++FCE K L EN
Sbjct: 406 LSYVHADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCERKELVENQ 465
Query: 2864 TKIN*RQLGQITVLSFIT-------ESLSICVHRIAFYI---IGLLDITLNRMVLLR--- 3004
+ L L F + I H Y G+ D +NR ++ +
Sbjct: 466 QNKKVKCLRTDNGLEFCNLKFDAYCKDHGIERHMTCTYTPQQNGVAD-RMNRTIMEKVRC 524
Query: 3005 -----G*IEPSWIRLGVL*CLQVFQNLFGEKL*VQLSTSSIDHLLQP*TSRLF*SCWSRE 3169
G E W + ++ S+IDH + W +
Sbjct: 525 MLNESGLGEEFWAEAAATAAYLISRS----------PASAIDHNVPE-------ELWLNK 567
Query: 3170 PPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWL----KCEPGXXXXX 3337
P +L+ FG + H +G L PR+ KG+FIGYPSG K YK+WL KC
Sbjct: 568 KPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPSGTKGYKIWLLEEQKCVISRNVLF 627
Query: 3338 XXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHTHEPETSGKSDVLA 3517
+ + E + + + S+ + +T G +
Sbjct: 628 HEELVYKD-----------------TIEKERVVESEAEPASHSKSTLIKMKTPGNLNSGG 670
Query: 3518 SQPKTDVPESKNSDDDEDHPEAQAQ--------ALRDYQLSRGRARRVHREPVRYGYSYI 3673
+D ES S D+E PE Q + +L +YQL R R RR P R+
Sbjct: 671 VIQVSDEEESDESVDEEQEPEPQVELPETQTTSSLANYQLVRDRERRQIHPPARFTEESG 730
Query: 3674 VSYSFTAASYIEEKEP 3721
V+++ + +EP
Sbjct: 731 VAFALVTVETLSMEEP 746
Score = 137 bits (345), Expect(4) = e-128
Identities = 94/304 (30%), Positives = 144/304 (47%), Gaps = 8/304 (2%)
Frame = +1
Query: 1582 FKMSGSNSLFENIDDLNKIVLELQNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDG 1761
FKM+ S S+ EN+++ KIV EL ++ + +E A++ LN L ++ +K +KYG
Sbjct: 41 FKMNDSKSINENVNEFLKIVAELSSLEINVVEEVRAILFLNGLSSRYSQLKHTLKYGNKA 100
Query: 1762 LTLSDVKNALKS--KDLDLRKENKFNGEN-FYIRRR---VDHREXXXXXXXXXXXXXXXX 1923
L+L DV ++ +S ++LD +KE N Y R +
Sbjct: 101 LSLQDVISSARSLERELDEQKETDKNTSTVLYTNERGRPQTRNQNQNKEGQGRGISKSNS 160
Query: 1924 XXXXXCFYCCKEGHIKNKCFKIIKEEKQRKQGKGINKSDKTHDFESGGNSMYYEVLCLSR 2103
C+YC KEGH+K CF ++ + G+ ++K E+ LS
Sbjct: 161 NAKLTCWYCKKEGHVKKDCFARKRKLESENPGEAGVITEKLVFSEA-----------LSV 209
Query: 2104 SPSSVSDNWILDSDCTFHMTPNKHWVSDFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHNG 2283
+ +V D W+LDS CT HM+ K W +F+ + LG++ + G++ I H G
Sbjct: 210 NDLAVRDIWVLDSGCTSHMSARKDWFCNFRKDGGTTILLGDDHSVKSQGQGSIKIDTHGG 269
Query: 2284 MTRKLTEVRYVPDLRRNLISLGIFDSNAYKSKNRIMKV--CKGALVMLKGFKRDGLYHLI 2457
L V+YVP+LRRNLIS G D YK + KV K L+G +GLY L
Sbjct: 270 TITVLENVKYVPELRRNLISTGTLDKRGYKHEGGDGKVRYFKNQKTALRGEIVNGLYILD 329
Query: 2458 GKTV 2469
G T+
Sbjct: 330 GNTI 333
Score = 137 bits (344), Expect(4) = e-128
Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Frame = +3
Query: 3801 KTKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIFV- 3977
K VLV K +K+I C+W+F +++ + K + Q EG+D+ IF
Sbjct: 774 KNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAP 833
Query: 3978 --KYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLK 4151
K+ +IRI++++V DLELEQ+D+KT FLHGELEE +YM QP GF + E+ CLLK
Sbjct: 834 VAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGELEEELYMEQPDGFISEDGENKVCLLK 893
Query: 4152 KSLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
KSLY LKQSPRQW KRF FM+ FI+ +D C+Y +
Sbjct: 894 KSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVK 931
Score = 98.6 bits (244), Expect(4) = e-128
Identities = 50/127 (39%), Positives = 79/127 (62%)
Frame = +1
Query: 4354 QISLLKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTS 4533
++ L EF+MK +G SRI G++I RDR + L +SQ ++ +V +F+M K +
Sbjct: 960 KVEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRFNMAEAKVTRSP 1019
Query: 4534 IASHF*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPG 4713
I +HF K + + ++E D ++PY A+ S+MY+MI RPD+AY I L+SR+M+ PG
Sbjct: 1020 IGAHF---KLAAVRDDDECIDNNDVPYASAVGSIMYAMIGTRPDLAYVICLVSRYMARPG 1076
Query: 4714 RDHWAAL 4734
HW A+
Sbjct: 1077 NIHWEAV 1083
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 179 bits (454), Expect(4) = e-110
Identities = 125/416 (30%), Positives = 213/416 (51%), Gaps = 23/416 (5%)
Frame = +1
Query: 1315 WQI*LHNVRKKMKAVVVQNKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNVL 1494
WQ+ KM+AV+ Q + A+ +K + W + +K A S + LHL +N+L
Sbjct: 55 WQV-------KMRAVLAQQDLDDALSGFDKRTQDWSNDE-KKKDRKAMSYIHLHLSNNIL 106
Query: 1495 REGEKDNTFE-IWTKLK-----KTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLEL 1650
+E K+ T +W KL+ K + ++ ++ LF K+ S+ +++ +IV +L
Sbjct: 107 QEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSTFKEIVADL 166
Query: 1651 QNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDGLTLSDVKNALKSKDLDLRKENKF 1830
+++ K +E++ +ILL SLP S+ + + I Y D L L +V +AL +K+ ++K
Sbjct: 167 ESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKE-KMKKMVPS 225
Query: 1831 NGEN-----FYIRRRVDHR----EXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCF 1983
G N +R R + + C YC ++GH ++C+
Sbjct: 226 EGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECW 285
Query: 1984 KIIKEEKQRKQGKGINKSDKTHDFESG---GNSMYYEVLCLSRSPSSVSDNWILDSDCTF 2154
K+ ++K ++ GK I K K + ++ E+L + SD WILD+ T+
Sbjct: 286 KL--QDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTY 343
Query: 2155 HMTPNKHWVSDFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRN 2334
HM PN+ W + ++ L G V +G++ C++ IG V IKM +G R L++VR++P+L+R+
Sbjct: 344 HMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRS 403
Query: 2335 LISLGIFDSNAYK--SKNRIMKVCKGALVMLKG-FKRDGLYHLIGKTVYEASALIS 2493
LISL D YK + I+KV KG+LV++K K LYHL G T+ A +S
Sbjct: 404 LISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 459
Score = 110 bits (276), Expect(4) = e-110
Identities = 51/97 (52%), Positives = 69/97 (71%)
Frame = +1
Query: 2866 QNKLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*TIMDKVRCLM 3045
+ K+K +RTDN +EF ++ F + C S I+HH V H PQQNGVAER+N I+ K RC++
Sbjct: 587 EKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCML 646
Query: 3046 MSSSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
++ +PK FW EAVSTT YLINRSPS + KT +E+
Sbjct: 647 SNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEV 683
Score = 103 bits (256), Expect(4) = e-110
Identities = 50/122 (40%), Positives = 72/122 (59%)
Frame = +2
Query: 2504 EKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTY 2683
+ T W ++GH+SE L L ++ LL G I L FC+HC+ GK ++ F TH +
Sbjct: 466 DATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEG 525
Query: 2684 VLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN* 2863
+LDYVH DLWGP ++ Y +++VDD+SR V + LK K Q F+ F EWK + E
Sbjct: 526 ILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 585
Query: 2864 TK 2869
T+
Sbjct: 586 TE 587
Score = 80.1 bits (196), Expect(4) = e-110
Identities = 75/251 (29%), Positives = 105/251 (41%), Gaps = 22/251 (8%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXX 3337
WS P N S+L+VFGC +AH G L+PR+ K +F+GYPSGVK YK+W C
Sbjct: 684 WSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLW--CPETKKVVI 741
Query: 3338 XXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHT----HEPETSGKS 3505
F+E N+PVE ++ + H H PE K
Sbjct: 742 SRNVVFHE------------SVILHDKPSTNVPVESQEKASVQVEHLISSGHAPE---KE 786
Query: 3506 DVLASQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRY-GYSYIVSY 3682
+V +Q D P ++SD + Q +++ + +R + P RY + IV+Y
Sbjct: 787 NVAINQ---DAPVIEDSD------SSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAY 837
Query: 3683 SFTAASYIE-EKEPLCFLMC*RALIALCGC-----AMDEEMSSLHKN-----------KK 3811
+ + A IE EP + I C AM +EM SL KN KK
Sbjct: 838 ALSVAEEIEGNAEPSTY----SEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKK 893
Query: 3812 PGSCAKTLKTK 3844
P C K K
Sbjct: 894 PIRCKWIFKRK 904
Score = 156 bits (395), Expect(3) = 3e-65
Identities = 82/157 (52%), Positives = 106/157 (67%), Gaps = 3/157 (1%)
Frame = +3
Query: 3804 TKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF--- 3974
T V +PK ++K I CKWIF ++++ + K + Q+ GIDFN +F
Sbjct: 882 TWEFVKLPK--EKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPI 939
Query: 3975 VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLKK 4154
+K+ +IR +L IVA +D ELEQ+D+KT FLHGELEE IYM QP GF V KE++ C LKK
Sbjct: 940 MKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKK 999
Query: 4155 SLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
SLY LKQSPRQWYKRFDSFML F + NYD+C+Y +
Sbjct: 1000 SLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK 1036
Score = 84.0 bits (206), Expect(3) = 3e-65
Identities = 59/195 (30%), Positives = 90/195 (46%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTSIASH 4545
L SEF MK LG+ +I GM I R+R L++SQ +++K++ +F+M+ KP+ +
Sbjct: 1069 LSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPIIFRL--- 1125
Query: 4546 F*FSKKSCPKTENEKKDMANIPYRMAIDSVMYSMISIRPDIAYSISLLSRFMSNPGRDHW 4725
CP+++ + + M+ +PY A+ S+MY+M GR
Sbjct: 1126 -------CPQSDYDIEYMSRVPYSSAVGSLMYAMF--------------------GRSR- 1157
Query: 4726 AALNWLWQYINGTVDRGLLYDNWSDNFELVGYVDSDFASDKDGRKSTTSRILNNLFTLAG 4905
D F VGYVDSDFA D D R+S T + FT+ G
Sbjct: 1158 ------------------------DGF--VGYVDSDFAGDLDRRRSLTGYV----FTIGG 1187
Query: 4906 NCIFWKSQLQPSVEL 4950
+ WK+ LQ +V L
Sbjct: 1188 CDVSWKASLQATVAL 1202
Score = 60.5 bits (145), Expect(3) = 3e-65
Identities = 33/67 (49%), Positives = 44/67 (65%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L+GL TEL + S I+ DSQS + L K+ ++HERT +IDV+YH IR + G V + K
Sbjct: 1222 LRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHIIRGVIVEGDVKVCK 1281
Query: 5181 ISTKYNP 5201
IST NP
Sbjct: 1282 ISTHDNP 1288
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 179 bits (454), Expect(4) = e-110
Identities = 125/416 (30%), Positives = 213/416 (51%), Gaps = 23/416 (5%)
Frame = +1
Query: 1315 WQI*LHNVRKKMKAVVVQNKIAPAICSSEKYPKSWKGEVLAEKFGDAHSCLILHLIDNVL 1494
WQ+ KM+AV+ Q + A+ +K + W + +K A S + LHL +N+L
Sbjct: 55 WQV-------KMRAVLAQQDLDDALSGFDKRTQDWSNDE-KKKDRKAMSYIHLHLSNNIL 106
Query: 1495 REGEKDNTFE-IWTKLK-----KTIFREVLVE*NLF--KMSGSNSLFENIDDLNKIVLEL 1650
+E K+ T +W KL+ K + ++ ++ LF K+ S+ +++ +IV +L
Sbjct: 107 QEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSTFKEIVADL 166
Query: 1651 QNVGEKISDENVAVILLNSLPESFNDIKSAIKYGRDGLTLSDVKNALKSKDLDLRKENKF 1830
+++ K +E++ +ILL SLP S+ + + I Y D L L +V +AL +K+ ++K
Sbjct: 167 ESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKE-KMKKMVPS 225
Query: 1831 NGEN-----FYIRRRVDHR----EXXXXXXXXXXXXXXXXXXXXXCFYCCKEGHIKNKCF 1983
G N +R R + + C YC ++GH ++C+
Sbjct: 226 EGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECW 285
Query: 1984 KIIKEEKQRKQGKGINKSDKTHDFESG---GNSMYYEVLCLSRSPSSVSDNWILDSDCTF 2154
K+ ++K ++ GK I K K + ++ E+L + SD WILD+ T+
Sbjct: 286 KL--QDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTY 343
Query: 2155 HMTPNKHWVSDFKTLNHGKVFLGNNQVCDIKDIGNVFIKMHNGMTRKLTEVRYVPDLRRN 2334
HM PN+ W + ++ L G V +G++ C++ IG V IKM +G R L++VR++P+L+R+
Sbjct: 344 HMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRS 403
Query: 2335 LISLGIFDSNAYK--SKNRIMKVCKGALVMLKG-FKRDGLYHLIGKTVYEASALIS 2493
LISL D YK + I+KV KG+LV++K K LYHL G T+ A +S
Sbjct: 404 LISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 459
Score = 110 bits (276), Expect(4) = e-110
Identities = 51/97 (52%), Positives = 69/97 (71%)
Frame = +1
Query: 2866 QNKLKTIRTDNSLEFYNRKFVNLCASHSILHHRIVRHNPQQNGVAERIN*TIMDKVRCLM 3045
+ K+K +RTDN +EF ++ F + C S I+HH V H PQQNGVAER+N I+ K RC++
Sbjct: 587 EKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCML 646
Query: 3046 MSSSIPKPFWREAVSTTVYLINRSPSTTINFKTLLEL 3156
++ +PK FW EAVSTT YLINRSPS + KT +E+
Sbjct: 647 SNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEV 683
Score = 103 bits (256), Expect(4) = e-110
Identities = 50/122 (40%), Positives = 72/122 (59%)
Frame = +2
Query: 2504 EKTMWW*RQIGHISEKELHYLHEKNLLCGDKIDFLDFCDHCVLGKQHKLNFCIGTHKSTY 2683
+ T W ++GH+SE L L ++ LL G I L FC+HC+ GK ++ F TH +
Sbjct: 466 DATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEG 525
Query: 2684 VLDYVHCDLWGPKKVPTYNDNVYFLSVVDDFSRHV*IFLLKTKDQTFEKFCEWKCLGEN* 2863
+LDYVH DLWGP ++ Y +++VDD+SR V + LK K Q F+ F EWK + E
Sbjct: 526 ILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 585
Query: 2864 TK 2869
T+
Sbjct: 586 TE 587
Score = 80.1 bits (196), Expect(4) = e-110
Identities = 75/251 (29%), Positives = 105/251 (41%), Gaps = 22/251 (8%)
Frame = +2
Query: 3158 WSREPPNLSNLKVFGCATFAHQKEGMLDPRSKKGVFIGYPSGVKSYKVWLKCEPGXXXXX 3337
WS P N S+L+VFGC +AH G L+PR+ K +F+GYPSGVK YK+W C
Sbjct: 684 WSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLW--CPETKKVVI 741
Query: 3338 XXXXXFNELDMPCFKAKXXXXXXXXXXXXENIPVEVEDTSGSSQVHT----HEPETSGKS 3505
F+E N+PVE ++ + H H PE K
Sbjct: 742 SRNVVFHE------------SVILHDKPSTNVPVESQEKASVQVEHLISSGHAPE---KE 786
Query: 3506 DVLASQPKTDVPESKNSDDDEDHPEAQAQALRDYQLSRGRARRVHREPVRY-GYSYIVSY 3682
+V +Q D P ++SD + Q +++ + +R + P RY + IV+Y
Sbjct: 787 NVAINQ---DAPVIEDSD------SSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAY 837
Query: 3683 SFTAASYIE-EKEPLCFLMC*RALIALCGC-----AMDEEMSSLHKN-----------KK 3811
+ + A IE EP + I C AM +EM SL KN KK
Sbjct: 838 ALSVAEEIEGNAEPSTY----SEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKK 893
Query: 3812 PGSCAKTLKTK 3844
P C K K
Sbjct: 894 PIRCKWIFKRK 904
Score = 156 bits (395), Expect(2) = 2e-43
Identities = 82/157 (52%), Positives = 106/157 (67%), Gaps = 3/157 (1%)
Frame = +3
Query: 3804 TKNLVLVPKLSKQKLIDCKWIF*N*RA*FSQ*TSKFQGQTGCKRFFQVEGIDFNYIF--- 3974
T V +PK ++K I CKWIF ++++ + K + Q+ GIDFN +F
Sbjct: 882 TWEFVKLPK--EKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPI 939
Query: 3975 VKYKTIRIMLAIVAYYDLELEQLDMKTVFLHGELEETIYM*QPLGFEVKSKEHMACLLKK 4154
+K+ +IR +L IVA +D ELEQ+D+KT FLHGELEE IYM QP GF V KE++ C LKK
Sbjct: 940 MKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKK 999
Query: 4155 SLYRLKQSPRQWYKRFDSFMLKAGFIKRNYDNCLYFR 4265
SLY LKQSPRQWYKRFDSFML F + NYD+C+Y +
Sbjct: 1000 SLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK 1036
Score = 50.1 bits (118), Expect(2) = 2e-43
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = +1
Query: 4366 LKSEFDMKYLGSPSRIFGMNIARDRSDCSLFISQNFFLQKIVSKFSMYLYKPVSTS 4533
L SEF MK LG+ +I GM I R+R L++SQ +++K++ +F+M+ KP S
Sbjct: 1069 LSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPFGRS 1124
Score = 60.5 bits (145), Expect(2) = 5e-13
Identities = 33/67 (49%), Positives = 44/67 (65%)
Frame = +3
Query: 5001 LQGLLTELRVLHSKAVIYTDSQSYLHLCKNPVYHERTMYIDVKYHFIREKVSSGLVNI*K 5180
L+GL TEL + S I+ DSQS + L K+ ++HERT +IDV+YH IR + G V + K
Sbjct: 1190 LRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHIIRGVIVEGDVKVCK 1249
Query: 5181 ISTKYNP 5201
IST NP
Sbjct: 1250 ISTHDNP 1256
Score = 44.3 bits (103), Expect(2) = 5e-13
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +1
Query: 4813 VGYVDSDFASDKDGRKSTTSRILNNLFTLAGNCIFWKSQLQPSVEL 4950
VGYVDSDFA D D R+S T + FT+ G + WK+ LQ +V L
Sbjct: 1129 VGYVDSDFAGDLDRRRSLTGYV----FTIGGCDVSWKASLQATVAL 1170