BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00000212
         (1005 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   299   1e-78
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        296   8e-78
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        289   1e-75
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   287   4e-75
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     287   5e-75
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               283   6e-74
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                283   6e-74
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     283   1e-73
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   283   1e-73
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   282   1e-73
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   281   2e-73
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   281   3e-73
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   281   3e-73
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   280   6e-73
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   280   8e-73
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   279   1e-72
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   277   5e-72
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   276   1e-71
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   275   2e-71
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   275   2e-71

>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  299 bits (766), Expect = 1e-78
 Identities = 147/336 (43%), Positives = 209/336 (62%), Gaps = 2/336 (0%)
 Frame = -2

Query: 1004 SKGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPHDFESDGNSMY 825
            ++ RSKS D K  C+ CGKEGH K +C+K I+  K ++ G  + +       E+   +M 
Sbjct: 208  NRSRSKSADGKRVCWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMV 267

Query: 824  XXXXXXXXXXXXXXEH-WILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNNVCEIKGIG 648
                           + W+LD+GC+FHMTP K WF DFK L  G V MGN+    +KGIG
Sbjct: 268  LLATDETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIG 327

Query: 647  SVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLKGF 468
            S+ I+  DG    LT+VRY+P++ RNLISLG  +  G  +KS++GI+K+ KG   +LKG 
Sbjct: 328  SIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQ 387

Query: 467  KRDGLYHLIGKTVLNASALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGGDKIESL 288
            KRD LY L G T     +  S  + ++T LWH R+GH+S+KG++ L K+  L  + I+ L
Sbjct: 388  KRDTLYILDGVTE-EGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKEL 446

Query: 287  DFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWG-PEKVPTFGGNVYFLSVVDDFSRH 111
            +FC+ CV GKQH++SF+   H +   L YVH DLWG P    + G + YF+S VDD+SR 
Sbjct: 447  EFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRK 506

Query: 110  VWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            VW++ L+ KD+ FEKF EWK++ ENQ+  K+K +RT
Sbjct: 507  VWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRT 542


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  296 bits (758), Expect = 8e-78
 Identities = 152/342 (44%), Positives = 207/342 (60%), Gaps = 9/342 (2%)
 Frame = -2

Query: 1001 KGRSKSRD------KKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPHDFESD 840
            KG  K+++      KK KCFYC KEGH    CF++ K+E Q K G  +   D       D
Sbjct: 218  KGHGKNQETADKKKKKRKCFYCRKEGHYIRDCFEKKKKESQEKSGDAAVASD-------D 270

Query: 839  GNSMYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNNVCEI 660
            G+  Y                W++DSGC+FH+ P K  F  ++ +D G+V MGNNNVC I
Sbjct: 271  GSDGYQSADLLVASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNI 330

Query: 659  KGIGSVFIKMHD---GVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGA 489
             GI   F K       + R L EVR+ P L+RNLISLG  D+ G+ +KS  G ++V KG 
Sbjct: 331  VGIW--FCKRSRCLMELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGT 388

Query: 488  LVMLKGFKRDGLYHLIGKTVLNASALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLG 309
             +++KG   +GLY L G +V     + + +  ++T LWH R+GH+S KGLQ L KQ LLG
Sbjct: 389  EIVMKGVNENGLYVLQGSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLG 448

Query: 308  GDKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVV 129
            GD+I+ L+FC++C+ GK H+  F+ G H S  VLDY H D WGP +VP+  G  YF+S++
Sbjct: 449  GDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLI 508

Query: 128  DDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            DD+SR VW+++LK KDQ  EKF  WK L ENQ+  KLK +RT
Sbjct: 509  DDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRT 550


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  289 bits (739), Expect = 1e-75
 Identities = 147/344 (42%), Positives = 207/344 (60%), Gaps = 11/344 (3%)
 Frame = -2

Query: 1001 KGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPH--------DFE 846
            +GRSKSR +   C YC ++GH  +KC+K   ++K ++ GK   K  K          D +
Sbjct: 224  RGRSKSRGRYKSCKYCKRDGHDISKCWKL--QDKDKRTGKYIPKGKKEEEGKAAVVTDEK 281

Query: 845  SDGNSMYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNNVC 666
            SD   +                 WILD+ CT+HM PN+ WF+ ++ +  G V MG++  C
Sbjct: 282  SDAELLVAYAGCAQTSD-----QWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPC 336

Query: 665  EIKGIGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGAL 486
            E+ GIG+V IKM DG  R L++VR++P+L+R+LISL   D  G+ Y   +GI+KV KG+L
Sbjct: 337  EVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSL 396

Query: 485  VMLKG-FKRDGLYHLIGKTVLNASALVSKTIP--EKTLLWHRRIGHISEKGLQCLHKQNL 315
            V++K   K   LYHL G T+L   A VS ++   + T LWH R+GH+SE GL  L K+ L
Sbjct: 397  VVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGL 456

Query: 314  LGGDKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLS 135
            L G  I  L FC+HC+ GK  ++ F+  TH +  +LDYVH DLWGP +  +FGG  Y ++
Sbjct: 457  LDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 516

Query: 134  VVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            +VDD+SR VW + LK K Q F  F EWK + E QT  K+K +RT
Sbjct: 517  IVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRT 560


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  287 bits (735), Expect = 4e-75
 Identities = 139/335 (41%), Positives = 202/335 (60%), Gaps = 2/335 (0%)
 Frame = -2

Query: 1001 KGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPHDFE-SDGNSMY 825
            +GRSKSR +   C YC + GH  + C+K   +EK + + K   K ++      +  N   
Sbjct: 166  RGRSKSRGRYKSCKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPD 225

Query: 824  XXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNNVCEIKGIGS 645
                          + W+LD+GCT+HM PN+ WF+ ++P+  G V MG+N  C++ G+G+
Sbjct: 226  AELLVAYAGCVQTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGT 285

Query: 644  VFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLKG-F 468
            + IKM DG  R L++VR++P L+RNLISL   D  G+ Y   +GI+KV KG+LV++K   
Sbjct: 286  IQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADI 345

Query: 467  KRDGLYHLIGKTVLNASALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGGDKIESL 288
            K   LYHL G T++   A V+ ++    L WH R+GH+SE GL  L K+ LL G  I  L
Sbjct: 346  KNADLYHLQGTTIVGNVAAVTDSLSNSDL-WHMRLGHMSEIGLAELSKRGLLDGQNIGKL 404

Query: 287  DFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVDDFSRHV 108
             FC+HC+ GK  ++ F+  TH +  +LDYVH DLWGP +  +FGG  Y +++VDD+SR V
Sbjct: 405  KFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDDYSRKV 464

Query: 107  WVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            W + LK K + F  F EWK + E QT  K+K +RT
Sbjct: 465  WPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRT 499


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  287 bits (734), Expect = 5e-75
 Identities = 146/346 (42%), Positives = 209/346 (60%), Gaps = 13/346 (3%)
 Frame = -2

Query: 1001 KGRSKSRDKKVKCFYCGKEGHMKNKCFK-RIKEEKQRKH---------GKGSDKIDKPHD 852
            +GRSKSR +   C YC ++GH  ++C+K + K+++ RK+         GK +   D+  D
Sbjct: 133  RGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSD 192

Query: 851  FESDGNSMYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNN 672
             E                     + WILD+ CT+HM PN+ WF+ ++ +  G V MG++ 
Sbjct: 193  AE---------LLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDT 243

Query: 671  VCEIKGIGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKG 492
             CE+ GIG+V IKM DG  R L +VR++P+L+R+LISL   D  G+ Y   +GI+KV KG
Sbjct: 244  PCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 303

Query: 491  ALVMLKG-FKRDGLYHLIGKTVLNASALVSKTIP--EKTLLWHRRIGHISEKGLQCLHKQ 321
            +LV++K   K   LYHL G T+L   A VS ++   + T LWH R+GH+SE GL  L K+
Sbjct: 304  SLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKR 363

Query: 320  NLLGGDKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYF 141
             LL G  I  L FC+HC+ GK  ++ F+  TH +  +LDYVH DLWGP +  +FGG  Y 
Sbjct: 364  GLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYM 423

Query: 140  LSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            +++VDD+SR VW + LK K Q F+ F EWK + E QT  K+K +RT
Sbjct: 424  MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 469


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  283 bits (725), Expect = 6e-74
 Identities = 145/344 (42%), Positives = 206/344 (59%), Gaps = 11/344 (3%)
 Frame = -2

Query: 1001 KGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPH--------DFE 846
            +GRSKSR +   C YC ++GH  +KC+K   ++K ++ GK   K  K          D +
Sbjct: 41   RGRSKSRGRYKSCKYCKRDGHDISKCWKL--QDKDKRTGKYIPKGKKEDEGKAAVVTDEK 98

Query: 845  SDGNSMYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNNVC 666
            SD   +                 WILD+ CT+HM PN+ WF+ ++ +  G V MG++  C
Sbjct: 99   SDAELLVAYAGCAQTSD-----QWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPC 153

Query: 665  EIKGIGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGAL 486
            E+ GIG+V IKM DG  R L++VR++P+L+R+LISL   D  G+ Y   +GI+KV KG+L
Sbjct: 154  EVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSL 213

Query: 485  VMLKG-FKRDGLYHLIGKTVLNASALVSKTIP--EKTLLWHRRIGHISEKGLQCLHKQNL 315
            V++K   K   LYHL G T+L   A VS ++   + T LWH R+GH+SE GL  L  + L
Sbjct: 214  VVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGL 273

Query: 314  LGGDKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLS 135
            L G  I  L FC+HC+ GK  ++ F+  TH +  +LDYVH DLWGP +  +FGG  Y ++
Sbjct: 274  LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 333

Query: 134  VVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            +V+D+SR VW + LK K Q F  F EWK + E QT  K+K +RT
Sbjct: 334  IVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRT 377


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  283 bits (725), Expect = 6e-74
 Identities = 145/344 (42%), Positives = 206/344 (59%), Gaps = 11/344 (3%)
 Frame = -2

Query: 1001 KGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPH--------DFE 846
            +GRSKSR +   C YC ++GH  +KC+K   ++K ++ GK   K  K          D +
Sbjct: 209  RGRSKSRGRYKSCKYCKRDGHDISKCWKL--QDKDKRTGKYIPKGKKEDEGKAAVVTDEK 266

Query: 845  SDGNSMYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNNVC 666
            SD   +                 WILD+ CT+HM PN+ WF+ ++ +  G V MG++  C
Sbjct: 267  SDAELLVAYAGCAQTSD-----QWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPC 321

Query: 665  EIKGIGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGAL 486
            E+ GIG+V IKM DG  R L++VR++P+L+R+LISL   D  G+ Y   +GI+KV KG+L
Sbjct: 322  EVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSL 381

Query: 485  VMLKG-FKRDGLYHLIGKTVLNASALVSKTIP--EKTLLWHRRIGHISEKGLQCLHKQNL 315
            V++K   K   LYHL G T+L   A VS ++   + T LWH R+GH+SE GL  L  + L
Sbjct: 382  VVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGL 441

Query: 314  LGGDKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLS 135
            L G  I  L FC+HC+ GK  ++ F+  TH +  +LDYVH DLWGP +  +FGG  Y ++
Sbjct: 442  LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 501

Query: 134  VVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            +V+D+SR VW + LK K Q F  F EWK + E QT  K+K +RT
Sbjct: 502  IVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRT 545


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  283 bits (723), Expect = 1e-73
 Identities = 145/346 (41%), Positives = 205/346 (59%), Gaps = 13/346 (3%)
 Frame = -2

Query: 1001 KGRSKSRDKKVKCFYCGKEGHMKNKCFKR----------IKEEKQRKHGKGSDKIDKPHD 852
            +GRSKSR +   C YC ++GH  ++C+K           I + K+ + GK +   D+  D
Sbjct: 259  RGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSD 318

Query: 851  FESDGNSMYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNN 672
             E                     + WILD+  T+HM PN+ WF+ ++ L  G V MG++ 
Sbjct: 319  TE---------LLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDT 369

Query: 671  VCEIKGIGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKG 492
             CE+ GIG+V IKM DG  R L++VR++P+L+R+LISL   D  G+ Y   +GI+KV KG
Sbjct: 370  PCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 429

Query: 491  ALVMLKG-FKRDGLYHLIGKTVLNASALVSKTIP--EKTLLWHRRIGHISEKGLQCLHKQ 321
            +LV++K   K   LYHL G T+L   A VS ++   + T LWH R+GH+SE GL  L K+
Sbjct: 430  SLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKR 489

Query: 320  NLLGGDKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYF 141
             LL G  I  L FC+HC+ GK  ++ F+  TH +  +LDYVH DLWGP    +FGG  Y 
Sbjct: 490  ELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYM 549

Query: 140  LSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            +++VDD+SR VW + LK K Q F+ F EWK + E QT  K+K +RT
Sbjct: 550  MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRT 595


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  283 bits (723), Expect = 1e-73
 Identities = 145/346 (41%), Positives = 205/346 (59%), Gaps = 13/346 (3%)
 Frame = -2

Query: 1001 KGRSKSRDKKVKCFYCGKEGHMKNKCFKR----------IKEEKQRKHGKGSDKIDKPHD 852
            +GRSKSR +   C YC ++GH  ++C+K           I + K+ + GK +   D+  D
Sbjct: 259  RGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSD 318

Query: 851  FESDGNSMYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNN 672
             E                     + WILD+  T+HM PN+ WF+ ++ L  G V MG++ 
Sbjct: 319  TE---------LLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDT 369

Query: 671  VCEIKGIGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKG 492
             CE+ GIG+V IKM DG  R L++VR++P+L+R+LISL   D  G+ Y   +GI+KV KG
Sbjct: 370  PCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 429

Query: 491  ALVMLKG-FKRDGLYHLIGKTVLNASALVSKTIP--EKTLLWHRRIGHISEKGLQCLHKQ 321
            +LV++K   K   LYHL G T+L   A VS ++   + T LWH R+GH+SE GL  L K+
Sbjct: 430  SLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKR 489

Query: 320  NLLGGDKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYF 141
             LL G  I  L FC+HC+ GK  ++ F+  TH +  +LDYVH DLWGP    +FGG  Y 
Sbjct: 490  ELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYM 549

Query: 140  LSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            +++VDD+SR VW + LK K Q F+ F EWK + E QT  K+K +RT
Sbjct: 550  MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRT 595


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  282 bits (722), Expect = 1e-73
 Identities = 147/338 (43%), Positives = 202/338 (59%), Gaps = 4/338 (1%)
 Frame = -2

Query: 1004 SKGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPHDFESDGNSMY 825
            S+GRSKSR KK  C YC K+ H   +C+K   +EK++  GK S          S  NS  
Sbjct: 119  SRGRSKSRGKKF-CKYCKKKNHFIEECWKLQNKEKRKSDGKASV-------VTSADNSDS 170

Query: 824  XXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVF-MGNNNVCEIKGIG 648
                          + WILD+ C+FH+  N+ WFS +K +  G V  MG++N  EI GIG
Sbjct: 171  GDCLVVFVVCVSSHDEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIG 230

Query: 647  SVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLKG- 471
            SV IK HDG+TR L +VR++P + RNLISL   D  G+ Y    G++KV KG+LV + G 
Sbjct: 231  SVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGD 290

Query: 470  FKRDGLYHLIGKTVLN--ASALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGGDKI 297
                 LY L G T+     +A+VSK  P KT +WH R+GH+SE G+  L K+NLL G   
Sbjct: 291  MNSANLYVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQ 350

Query: 296  ESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVDDFS 117
             ++ FC+HCV GK  ++ F+   H++  +LDYVH DLWGP + P+ GG  Y L+++DD+S
Sbjct: 351  GNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYS 410

Query: 116  RHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            R VW + LK KD TF  F EWK + + QT  ++K +RT
Sbjct: 411  RKVWPYFLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRT 448


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  281 bits (720), Expect = 2e-73
 Identities = 148/338 (43%), Positives = 201/338 (59%), Gaps = 4/338 (1%)
 Frame = -2

Query: 1004 SKGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPHDFESDGNSMY 825
            S+GRSKSR KK  C YC K+ H   +C+K   +EK++  GK S          S  NS  
Sbjct: 224  SRGRSKSRGKKF-CKYCKKKIHFIKECWKLQNKEKRKSDGKASV-------VTSAKNSDS 275

Query: 824  XXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVF-MGNNNVCEIKGIG 648
                          + WILD+ C+FH+  N+ WFS +K +  G V  MGN+N  EI GIG
Sbjct: 276  GDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIG 335

Query: 647  SVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLKG- 471
            SV IK HDG+TR L +VR++P + RNLISL   D  G+ Y    G++KV KG+LV + G 
Sbjct: 336  SVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGD 395

Query: 470  FKRDGLYHLIGKTVLNA--SALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGGDKI 297
                 LY L G T+  +  +A V+K  P KT LWH R+GH+SE G+  L K+NLL G   
Sbjct: 396  MNSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQ 455

Query: 296  ESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVDDFS 117
             ++ FC+ CV GK  ++ F+   H++  +LDYVH DLWGP + P+ GG  Y L+++DD+S
Sbjct: 456  GNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYS 515

Query: 116  RHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            R VW + LK KD TF  F EWK + E QT  ++K +RT
Sbjct: 516  RKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRT 553


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  281 bits (719), Expect = 3e-73
 Identities = 141/346 (40%), Positives = 205/346 (59%), Gaps = 13/346 (3%)
 Frame = -2

Query: 1001 KGRSKSRDKKVKCFYCGKEGHMKNKCFKR----------IKEEKQRKHGKGSDKIDKPHD 852
            +GRSKSR +   C YC ++GH   +C+K           + + K+ + GK +   D+  D
Sbjct: 431  RGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSD 490

Query: 851  FESDGNSMYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNN 672
             E                     + WIL++ C +HM PN+ WF+ ++ +  G V MG++ 
Sbjct: 491  AE---------LLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDT 541

Query: 671  VCEIKGIGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKG 492
             CE+ GIG+V IKM DG  R L++VR++P+L+R+LISL   D  G+ Y   +GI+KV KG
Sbjct: 542  PCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 601

Query: 491  ALVMLKG-FKRDGLYHLIGKTVLNASALVSKTIP--EKTLLWHRRIGHISEKGLQCLHKQ 321
            +LV++K   K   LYHL G T+L   A VS ++   + T LWH R+GH++E GL  L K+
Sbjct: 602  SLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKR 661

Query: 320  NLLGGDKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYF 141
             LL G  I  L FC+HC+ GK  ++ F+  TH +  +LDYVH DLWGP +  +FGG  Y 
Sbjct: 662  GLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYM 721

Query: 140  LSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            +++VDD+SR VW + LK K Q F+ F EWK + E QT  K+K +RT
Sbjct: 722  MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 767


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  281 bits (719), Expect = 3e-73
 Identities = 141/346 (40%), Positives = 205/346 (59%), Gaps = 13/346 (3%)
 Frame = -2

Query: 1001 KGRSKSRDKKVKCFYCGKEGHMKNKCFKR----------IKEEKQRKHGKGSDKIDKPHD 852
            +GRSKSR +   C YC ++GH   +C+K           + + K+ + GK +   D+  D
Sbjct: 224  RGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSD 283

Query: 851  FESDGNSMYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNN 672
             E                     + WIL++ C +HM PN+ WF+ ++ +  G V MG++ 
Sbjct: 284  AE---------LLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDT 334

Query: 671  VCEIKGIGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKG 492
             CE+ GIG+V IKM DG  R L++VR++P+L+R+LISL   D  G+ Y   +GI+KV KG
Sbjct: 335  PCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 394

Query: 491  ALVMLKG-FKRDGLYHLIGKTVLNASALVSKTIP--EKTLLWHRRIGHISEKGLQCLHKQ 321
            +LV++K   K   LYHL G T+L   A VS ++   + T LWH R+GH++E GL  L K+
Sbjct: 395  SLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKR 454

Query: 320  NLLGGDKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYF 141
             LL G  I  L FC+HC+ GK  ++ F+  TH +  +LDYVH DLWGP +  +FGG  Y 
Sbjct: 455  GLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYM 514

Query: 140  LSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            +++VDD+SR VW + LK K Q F+ F EWK + E QT  K+K +RT
Sbjct: 515  MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 560


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  280 bits (716), Expect = 6e-73
 Identities = 145/334 (43%), Positives = 200/334 (59%)
 Frame = -2

Query: 1004 SKGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPHDFESDGNSMY 825
            SK RSKS+ KK KCF C KEGH K  C  R +           + + K  +  +   S Y
Sbjct: 214  SKSRSKSKTKKFKCFICHKEGHFKKDCPDRRQ-----------NTVKKTVNRWTRVRSGY 262

Query: 824  XXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNNVCEIKGIGS 645
                              L  G  F    +K     FK  D G V +GNN  C+I G G+
Sbjct: 263  ------------------LIQGALFTCVLSKLGLKTFKEADGGYVLLGNNKHCKILGTGT 304

Query: 644  VFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLKGFK 465
            V IK +DG+ R L +VRY+P+L+RNLISLG  D +G+++KSE   ++V +G+L ++KG  
Sbjct: 305  VRIKHYDGIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTI 364

Query: 464  RDGLYHLIGKTVLNASALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGGDKIESLD 285
            ++GLY LIG+TV    + V K     T LWH+R+GHIS +GLQ L KQ +LG  K+  L 
Sbjct: 365  KNGLYTLIGQTVTGKVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLP 424

Query: 284  FCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVDDFSRHVW 105
            FC+HCV GK  ++ F+   H++ + LDY+H DLWGP +VP+ GG  YFL+++DD+SR VW
Sbjct: 425  FCEHCVFGKATRVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVW 484

Query: 104  VFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            ++ LK+K +TF KF EWK L E QT  K+K +RT
Sbjct: 485  IYFLKNKSETFLKFKEWKILVETQTSRKVKKLRT 518


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group] gi|22655747|gb|AAN04164.1| Putative
            retrotransposon protein [Oryza sativa Japonica Group]
            gi|31431214|gb|AAP53029.1| retrotransposon protein,
            putative, Ty1-copia subclass, expressed [Oryza sativa
            Japonica Group]
          Length = 1229

 Score =  280 bits (715), Expect = 8e-73
 Identities = 148/338 (43%), Positives = 198/338 (58%), Gaps = 4/338 (1%)
 Frame = -2

Query: 1004 SKGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPHDFESDGNSMY 825
            S+GRSKSR KK  C YC K+ H   +C+K   +EK++  GK S          S  NS  
Sbjct: 221  SRGRSKSRGKKF-CKYCKKKNHFIEECWKLQNKEKRKSDGKASV-------VTSAENSDS 272

Query: 824  XXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVF-MGNNNVCEIKGIG 648
                          + WILD+ C F +  N+ WFS  K +  G V  MG+NN  EI GIG
Sbjct: 273  ADCLVFFAGCVASHDEWILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIG 332

Query: 647  SVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLKG- 471
            SV IK HDG+TR L +VR++P + RNLISL   D  G+ Y    G++KV KG+LV + G 
Sbjct: 333  SVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGD 392

Query: 470  FKRDGLYHLIGKTVLNA--SALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGGDKI 297
                 LY L G T+  +  +A VSK  P KT LWH R+GH+SE G+  L K+NLL G   
Sbjct: 393  MNSANLYVLRGSTLHGSLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQ 452

Query: 296  ESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVDDFS 117
             ++ FC+HCV GK  ++ F+   H++  +LDYVH DLWGP + P+ GG  Y L+++DD+S
Sbjct: 453  GNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYS 512

Query: 116  RHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            R VW + LK KD TF  F EWK + E Q   ++K +RT
Sbjct: 513  RKVWPYFLKHKDDTFAAFKEWKVMIERQAEKEVKVLRT 550


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  279 bits (713), Expect = 1e-72
 Identities = 149/338 (44%), Positives = 199/338 (58%), Gaps = 4/338 (1%)
 Frame = -2

Query: 1004 SKGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPHDFESDGNSMY 825
            S+GRSKSR KK  C YC K+ H   +C+K   +EK++  GK S          S  NS  
Sbjct: 224  SRGRSKSRGKKF-CKYCKKKNHFIEECWKLQNKEKRKSDGKASV-------VTSAENSDS 275

Query: 824  XXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVF-MGNNNVCEIKGIG 648
                          + WILD+ C+FH+  N+ WFS +K +  G V  MG++N  EI GIG
Sbjct: 276  GDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIG 335

Query: 647  SVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLKG- 471
            SV IK HDG+TR L +VR++P + RNLISL   D  G+ Y S  G++KV KG+LV + G 
Sbjct: 336  SVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGD 395

Query: 470  FKRDGLYHLIGKTVLNA--SALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGGDKI 297
                 LY L G T+  +  +A VSK  P KT LWH R+GH+SE G+  L K+NLL G   
Sbjct: 396  MNSANLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQ 455

Query: 296  ESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVDDFS 117
              + FC+HCV GK  ++ F+   H++  +LDYVH DLWGP +    GG  Y L+++DD+S
Sbjct: 456  GKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYS 515

Query: 116  RHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            R VW + LK KD TF  F EWK   E QT  ++K +RT
Sbjct: 516  RKVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRT 553


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  277 bits (708), Expect = 5e-72
 Identities = 134/336 (39%), Positives = 203/336 (60%), Gaps = 2/336 (0%)
 Frame = -2

Query: 1004 SKGRSKSRDKKVKCFYCGKEGHMKNKCFKRIKEEKQRKHGKGSDKIDKPHDFESDGNSMY 825
            +K  SK       C YC ++GH K  C K+ K+ +++               E D NS  
Sbjct: 212  NKPMSKGAKPDDVCNYCKEKGHWKFDCPKKKKQSEKQSVSAAVA--------EEDTNSEE 263

Query: 824  XXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVFMGNNNVCEIKGIGS 645
                            W+LDSG ++H+ P + WF+ ++ +D G + M N++VC++ G GS
Sbjct: 264  DIALVADEHTHHSDV-WVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGS 322

Query: 644  VFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLKGFK 465
            + I+ HDG    L EVR+VP + +NLISL   D+ GFS+  ++G+++V KG+ ++LKG  
Sbjct: 323  IKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVM 382

Query: 464  RDGLYHLIGKTVLNASALVSKTIPEK--TLLWHRRIGHISEKGLQCLHKQNLLGGDKIES 291
            R  LY L G TV  ++ + S    +K  T LWH R+GH+ E+G+Q L K++LL G K++S
Sbjct: 383  RGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKS 442

Query: 290  LDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVDDFSRH 111
            L+FC+HCV GK H+  F    H++   LDY+H D WGP +V + GG  +F+S++DD+SR 
Sbjct: 443  LEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRM 502

Query: 110  VWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
             WV+++K K + F+KF EWK L ENQTG K+K +RT
Sbjct: 503  TWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRT 538


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  276 bits (705), Expect = 1e-71
 Identities = 149/341 (43%), Positives = 199/341 (58%), Gaps = 8/341 (2%)
 Frame = -2

Query: 1001 KGRSKSRD--KKVKCFYCGKEGHMKNKCFK-RIKEEKQRKHGKGSDKIDKPHDFESDGNS 831
            +GRSKS+    K  C YC  + H  ++C K + KE K +K GK S       D +S G+ 
Sbjct: 218  RGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDS-GDC 276

Query: 830  MYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVF-MGNNNVCEIKG 654
            +                 WILDS C+FH+   ++WFS +KP+ +G V  MG++N C I G
Sbjct: 277  LVVFAGCVAGHD-----EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVG 331

Query: 653  IGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLK 474
            IGSV IK  DG+TR L  VRY+P + RNLISL   D  G+ Y   +G++KV KG+LV LK
Sbjct: 332  IGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391

Query: 473  GFKRDG-LYHLIGKTVL---NASALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGG 306
            G      LY L G T+    +A+A V+   P KT LWH R+GH+S  G+  L K+NLL G
Sbjct: 392  GDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKG 451

Query: 305  DKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVD 126
                 + FC+HC+ GK  ++ F+   H +   LDYVH DLWGP K P+ GG  Y L+V+D
Sbjct: 452  CTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVID 511

Query: 125  DFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            D+SR VW + LK KD TF  F  WK + E QT  K+K +RT
Sbjct: 512  DYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRT 552


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  275 bits (704), Expect = 2e-71
 Identities = 148/341 (43%), Positives = 199/341 (58%), Gaps = 8/341 (2%)
 Frame = -2

Query: 1001 KGRSKSRD--KKVKCFYCGKEGHMKNKCFK-RIKEEKQRKHGKGSDKIDKPHDFESDGNS 831
            +GRSKS+    K  C YC  + H  ++C K + KE K +K GK S       D +S G+ 
Sbjct: 218  RGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDS-GDC 276

Query: 830  MYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVF-MGNNNVCEIKG 654
            +                 WILDS C+FH+   ++WFS +KP+ +G V  MG++N C I G
Sbjct: 277  LVVFAGCVAGHD-----EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVG 331

Query: 653  IGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLK 474
            IGSV IK  DG+TR L  VRY+P + RNLISL   D  G+ Y   +G++KV KG+LV LK
Sbjct: 332  IGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391

Query: 473  GFKRDG-LYHLIGKTVL---NASALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGG 306
            G      LY L G T+    +A+A V+   P KT LWH R+GH+S  G+  L K+NLL G
Sbjct: 392  GDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKG 451

Query: 305  DKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVD 126
                 + FC+HC+ GK  ++ F+   H +   LDYVH DLWGP K P+ GG  Y L+++D
Sbjct: 452  CTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIID 511

Query: 125  DFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            D+SR VW + LK KD TF  F  WK + E QT  K+K +RT
Sbjct: 512  DYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRT 552


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  275 bits (703), Expect = 2e-71
 Identities = 147/341 (43%), Positives = 199/341 (58%), Gaps = 8/341 (2%)
 Frame = -2

Query: 1001 KGRSKSRD--KKVKCFYCGKEGHMKNKCFK-RIKEEKQRKHGKGSDKIDKPHDFESDGNS 831
            +GRSKS+    K  C YC  + H  ++C K + KE K +K GK S       D +S G+ 
Sbjct: 218  RGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDS-GDC 276

Query: 830  MYXXXXXXXXXXXXXXEHWILDSGCTFHMTPNKHWFSDFKPLDQGKVF-MGNNNVCEIKG 654
            +                 WILDS C+FH+   ++WFS +KP+ +G V  MG++N C I G
Sbjct: 277  LVVFAGCVAGHD-----EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVG 331

Query: 653  IGSVFIKMHDGVTRKLTEVRYVPDLRRNLISLGAFDTNGFSYKSENGIMKVCKGALVMLK 474
            IGSV IK  DG+TR L  VRY+P + RNLISL   D  G+ Y   +G++KV KG+LV LK
Sbjct: 332  IGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391

Query: 473  GFKRDG-LYHLIGKTVL---NASALVSKTIPEKTLLWHRRIGHISEKGLQCLHKQNLLGG 306
            G      LY L G T+    +A+A ++   P KT LWH R+GH+S  G+  L K+NLL G
Sbjct: 392  GDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKG 451

Query: 305  DKIESLDFCDHCVLGKQHKISFSVGTHKSTSVLDYVHCDLWGPEKVPTFGGNVYFLSVVD 126
                 + FC+HC+ GK  ++ F+   H +   LDYVH DLWGP K P+ GG  Y L+++D
Sbjct: 452  CTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIID 511

Query: 125  DFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRT 3
            D+SR VW + LK KD TF  F  WK + E QT  K+K +RT
Sbjct: 512  DYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRT 552