BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00000172
         (2030 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        694   0.0  
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   660   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   656   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     643   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     641   0.0  
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   637   e-180
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   632   e-178
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           629   e-177
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   626   e-176
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   626   e-176
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   624   e-176
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   623   e-176
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   617   e-174
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              608   e-171
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              607   e-171
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              606   e-170
gb|AFB73912.1| polyprotein [Citrus sinensis]                          605   e-170
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...   599   e-168
gb|AFB73911.1| polyprotein [Citrus sinensis]                          598   e-168
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  597   e-168

>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  694 bits (1791), Expect = 0.0
 Identities = 349/686 (50%), Positives = 469/686 (68%), Gaps = 15/686 (2%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNGLEFC+K F + C  HGI  H+TVR  PQQNG+AERMNRT++DK RC++++S +P+
Sbjct: 549  RTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCMLINSKLPR 608

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EAV+TA YL+NRSPS+AI FKTP E+W+G+P N  NLRVFGC A++H  +GKL+ R
Sbjct: 609  SFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEAR 668

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNE--------------QDMPCLKA 498
            + KGVF+GYP GVKGYK+W K +   + +VSRDV+F+E              QD P    
Sbjct: 669  ALKGVFVGYPDGVKGYKIWCKDQG--KCIVSRDVVFHESVLLKESAEHDAGLQDNPAANK 726

Query: 499  XXXXXXXXXXXXDGIVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXX 678
                           V +  + +SE     D   ++  S+                    
Sbjct: 727  RSGSETSKVN-----VELLTDKSSEKEAASDDERATAESE-------------------E 762

Query: 679  XXXXXXAQAQALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVL 858
                   QA  L++YQL+RDR RRE R P RYGY+ +++YA   A  V  +EP  FS+ +
Sbjct: 763  HEVSELPQAD-LQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAM 821

Query: 859  KSPNRSLWLRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKAR 1038
            +S +   WL AM++EM SL +N+TW L+  P  ++LI+CKWIFK  E     EPP++KAR
Sbjct: 822  ESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKAR 881

Query: 1039 LVAKGFSQIEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIY 1218
            LVA+GF+Q EG+DFNEIFSPVVK+ +IRI+LA+VA  DL+LEQ+DVKTAFLHG LEE I 
Sbjct: 882  LVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQIL 941

Query: 1219 MRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGN 1398
            M QP GFE K KE+  CLL KSLYGLKQSPRQWY+RFD FM+  G+ +S YDSC+YF G+
Sbjct: 942  MAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGS 1001

Query: 1399 NVETAIYLLLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRS 1578
            +     YLLLYVDDMLIA K++ +I  LK+LLK+EF+MKDLG A RILGM+I RDR+  +
Sbjct: 1002 DQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGT 1061

Query: 1579 LFISQKPFLQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGS 1758
            LF+SQ  +++K++ +F M  CKPV TPL   FKLS  +   T +++++M   PY  A+GS
Sbjct: 1062 LFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAAT---TSEDESQMNEFPYAQAVGS 1118

Query: 1759 VMYSMISTRPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSND-FE 1935
            +MY+M+ TR DIAY++S++SR+++ PG+ HW A+KW++RY+ G+   GLLY    +D  E
Sbjct: 1119 LMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDKIE 1178

Query: 1936 LVGYVDSDYAGDHDGRKSTTSYFFTL 2013
            ++G+VDSD+AGD D RKST+ Y F L
Sbjct: 1179 VMGFVDSDFAGDLDRRKSTSRYMFVL 1204


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  660 bits (1703), Expect = 0.0
 Identities = 330/678 (48%), Positives = 452/678 (66%), Gaps = 2/678 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNGLEFC  +F   C   GI  HRTVR+ PQQNGVAERMN+T++++ RC++ ++G+ +
Sbjct: 537  RTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDR 596

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EAVSTA YLINR P T I  KTP+EMWSG+  + SNL+ FGC A+ H  EGKL+PR
Sbjct: 597  RFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPR 656

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDG 540
            ++KGVF+GY  GVKG+++W   E   RV++SR+V+F+E  +                   
Sbjct: 657  AKKGVFVGYGDGVKGFRIWSPAEK--RVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQ 714

Query: 541  IVPVEVENTSESSQPHDQPESSGT-SDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQALR 717
            +    ++N S+  +P ++ +   T +DI                                
Sbjct: 715  VEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQ---------------------- 752

Query: 718  DYQLSRDRARRE-TRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPNRSLWLRAM 894
               +++DR RR   R P RYG+  +V YA   A  V+  EP  + + + S +   W  AM
Sbjct: 753  --SIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAM 810

Query: 895  EEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQIEGI 1074
             +EM SLHKN+TW LV +PS +K+I CKW+FK KE  S  E  ++KAR+VA+GF+Q EG+
Sbjct: 811  GDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGV 870

Query: 1075 DFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGK 1254
            D+NEIFSPVV++ +IR++LA+VA  +L+LEQLDVKTAFLHGELEE IYM QP GF+  GK
Sbjct: 871  DYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGK 930

Query: 1255 ENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLLLYV 1434
            EN  C LKKSLYGLKQSPRQWYKRFDS+M+K G+ +S+YD C+Y+   N ++ IYL+LYV
Sbjct: 931  ENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYV 990

Query: 1435 DDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFLQKI 1614
            DDMLIA K +  I  LK LL +EF+MKDLG A +ILGM I RDR  R LF+SQ+ ++QK+
Sbjct: 991  DDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKV 1050

Query: 1615 ISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTRPDI 1794
            +++F M   KP+ TP A++  L+    P++E+EK  M+ +PY  A+GS+MY+M+ TRPD+
Sbjct: 1051 LARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDL 1110

Query: 1795 AYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYAGDH 1974
            A+++S++SRFM  PGR+HW A+K + RY+ GT D GL+Y        + GY DSDYAGD 
Sbjct: 1111 AHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIY-GGDTQCLVTGYSDSDYAGDV 1169

Query: 1975 DGRKSTTSYFFTLAGNCI 2028
            D R+S T Y FTL G+ +
Sbjct: 1170 DTRRSMTGYVFTLGGSVV 1187


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  656 bits (1692), Expect = 0.0
 Identities = 341/675 (50%), Positives = 453/675 (67%), Gaps = 2/675 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG+EFC+K F   C   GIV H TV H PQQNGVAERMNRTI+ K RCL+ ++G+PK
Sbjct: 766  RTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPK 825

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EAVSTA YLINRSPS AI+ KTP+E+WSG P N S+LRVFGC A+ H   GKL+PR
Sbjct: 826  QFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPR 885

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDG 540
            + K +FLGYPSGVKGYK+W       +V++SR+V+F+E  M   K               
Sbjct: 886  AIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKPSTNVPVESQEKAS- 942

Query: 541  IVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQALRD 720
               V+VE+   S    ++ + +   D                          +  Q    
Sbjct: 943  ---VQVEHLISSGHAPEKEDVAINQD-----------------EPVIEDSNSSIVQQSPK 982

Query: 721  YQLSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPMCFSDVLKSPNRSLWLRAM 894
              +++DR +R  + P RY   + IV+YA + A  +E   EP  +S+ + S + + W+ AM
Sbjct: 983  RSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAM 1042

Query: 895  EEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQIEGI 1074
             +EM SL KN TW LV  P ++K I CKWIFK KE  S+++  R+KARL+AKG+SQI GI
Sbjct: 1043 HDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGI 1102

Query: 1075 DFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGK 1254
            DFN++FSPVVK+ +IR +L++VA +D +LEQ+DVKTAFLHGELEE IYM QP GF   GK
Sbjct: 1103 DFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGK 1162

Query: 1255 ENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLLLYV 1434
            EN+ C LKKSLYGLKQSPRQWYKRFDSFML   F +SNYDSC+Y    +  +AIYLLLYV
Sbjct: 1163 ENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYV 1221

Query: 1435 DDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFLQKI 1614
            DDMLIA K + +I  LK+ L SEF+MKDLG A +ILGM I R R    L++SQK +++K+
Sbjct: 1222 DDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKV 1281

Query: 1615 ISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTRPDI 1794
            + +F+MH  KPV TPLA+HF+LS   CP+++ +   M+ +PY  A+GS+MY+M+ +RPD+
Sbjct: 1282 LRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDL 1341

Query: 1795 AYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYAGDH 1974
            ++++S++SR+MANPG++HW A++W+ RY+ GT     L    S D  LVGYVDSD+AGD 
Sbjct: 1342 SHALSVVSRYMANPGKEHWKAVQWIFRYLRGT-SSACLQFGRSRD-GLVGYVDSDFAGDL 1399

Query: 1975 DGRKSTTSYFFTLAG 2019
            D  +S   Y FT+ G
Sbjct: 1400 DRGRSLAGYVFTIGG 1414


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  643 bits (1658), Expect = 0.0
 Identities = 337/675 (49%), Positives = 448/675 (66%), Gaps = 2/675 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG+E C+K F   C   GIV H TV H PQQNGVAERMNRTI+ K RC++ ++ +PK
Sbjct: 468  RTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPK 527

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EAVSTA YLINRSPS AI+ KTP+E+WSG P N S+LRVFGC A+ H   GKL+PR
Sbjct: 528  QFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPR 587

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDG 540
              K +FLGY SGVKGYK+W       +V++SR+V+F+E  M   K               
Sbjct: 588  VIKCIFLGYLSGVKGYKLWCPETK--KVVISRNVVFHESIMLHDKPSTNVPVESQEK--- 642

Query: 541  IVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQALRD 720
             V V+VE+   S    ++ + +   D                             Q    
Sbjct: 643  -VSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSI-----------------VQQSPK 684

Query: 721  YQLSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPMCFSDVLKSPNRSLWLRAM 894
              +++DR +R T+ P RY   + IV+YA + A  +E   EP  +SD + S + + W+ AM
Sbjct: 685  RSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAM 744

Query: 895  EEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQIEGI 1074
             +EM SL KN +W L   P ++K I CKWIFK KE  S ++  R+KARLVAKG+SQI GI
Sbjct: 745  HDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGI 804

Query: 1075 DFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGK 1254
            DFN++FSPVVK+ +IR +L++VA +D +LEQ+DVKTAFLHGELEE IYM QP GF   GK
Sbjct: 805  DFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGK 864

Query: 1255 ENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLLLYV 1434
            EN+ C LKKSLYGLKQSPRQWYKRFDSFML   F +SNYDSC+Y    +  +AIYLLLYV
Sbjct: 865  ENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYV 923

Query: 1435 DDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFLQKI 1614
            DDMLIA K + +I  LK+ L SEF+MKDLG A +ILGM I R+R    L++SQK +++K+
Sbjct: 924  DDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKV 983

Query: 1615 ISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTRPDI 1794
            + +F+MH  K V T LA+HF+LS   CP++  +   M+ +PY  A+ S+MY+M+ +RPD+
Sbjct: 984  LHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDL 1043

Query: 1795 AYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYAGDH 1974
            ++++S++SR+MANPG++HW A++W+ RY+ GT    L +   S+   LVGYVDSD+AGD 
Sbjct: 1044 SHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSDG--LVGYVDSDFAGDL 1101

Query: 1975 DGRKSTTSYFFTLAG 2019
            D R+S T Y FT+ G
Sbjct: 1102 DRRRSLTGYVFTVGG 1116


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  641 bits (1653), Expect = 0.0
 Identities = 334/679 (49%), Positives = 445/679 (65%), Gaps = 6/679 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG+EFC+K F   C   GIV H T  H PQQN VAERMNRTI+ K RC++ ++G+PK
Sbjct: 531  RTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPK 590

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EAVSTA YLINRSP  AI+ KTP+E+WSG P N S+LRVFGC A+ H   GKL+PR
Sbjct: 591  QFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPR 650

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQ----DMPCLKAXXXXXXXXXX 528
            + K +FLGY SGVKGYK+W       +V++SR+V+F+E     D P              
Sbjct: 651  AIKCIFLGYASGVKGYKLWCPETK--KVVISRNVVFHESVILHDKPSTNVPVESQEK--- 705

Query: 529  XXDGIVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
                   V+VE+   S    ++ + +   D                              
Sbjct: 706  -----ASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKR------------ 748

Query: 709  ALRDYQLSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPMCFSDVLKSPNRSLW 882
                  +++D+ +R  + P RY   + IV+YA + A  +E   EP  +S+ + S + + W
Sbjct: 749  -----SIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRW 803

Query: 883  LRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQ 1062
            + AM +EM SL KN TW LV  P ++K I CKWIFK KE  S ++  R+KARLVAKG+SQ
Sbjct: 804  ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 863

Query: 1063 IEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFE 1242
            I GIDFN++FSPVVK+ +IR +L +VA +D +LEQ++VKTAFLHGELEE IYM QP GF 
Sbjct: 864  IPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFV 923

Query: 1243 EKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYL 1422
              GKEN+ C LKKSLYGLKQSPRQWYKRFDSFML   F  SNYDSC+Y    +  + IYL
Sbjct: 924  VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVVD-GSVIYL 982

Query: 1423 LLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPF 1602
            LLYVDDMLIA K + +I  LK+ L SEF+MKDLG A +ILGM I R+R    L++SQK +
Sbjct: 983  LLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGY 1042

Query: 1603 LQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMIST 1782
            ++K++ +F+MH  KPV TPLA+HF+LS   CP ++ +   M+ +PY  A+GS+MY+M+  
Sbjct: 1043 IEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCC 1102

Query: 1783 RPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDY 1962
            RPD+++++S+++R+MANPG++HW A++W+ RY+ GT    L +   S D  LVGYVDSD+
Sbjct: 1103 RPDLSHALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQFER-SRD-GLVGYVDSDF 1160

Query: 1963 AGDHDGRKSTTSYFFTLAG 2019
            AGD D R+S T Y FT+ G
Sbjct: 1161 AGDLDRRRSITGYVFTIGG 1179


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  637 bits (1642), Expect = e-180
 Identities = 324/693 (46%), Positives = 440/693 (63%), Gaps = 17/693 (2%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNGLEFCNK F + C   GIV HRTVRH PQQNGVAERMN+T++ + RC+ + +G+ K
Sbjct: 871  RTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSK 930

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EAV+TA YL+NRSPSTAI+FKTP E+WSG+P N S L++FGC A+ H  +GKL+PR
Sbjct: 931  KFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPR 990

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDM-----------PCLKAXXX 507
            + K +FLGY +GVKGY++W   +   + ++SRDV F+E  M              K    
Sbjct: 991  AMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLG 1050

Query: 508  XXXXXXXXXDGIVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXX 687
                     D  +   V++TSE     DQ +S                            
Sbjct: 1051 ANQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQS-------------------------- 1084

Query: 688  XXXAQAQALRDYQLSRDRARRETRKPARY------GYSYIVSYACAAASFVEEKEPMCFS 849
                         ++  R RRE R+P RY        +  V++A A A  +  +EP  + 
Sbjct: 1085 -------------IAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYK 1131

Query: 850  DVLKSPNRSLWLRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRF 1029
            + ++S +   WL +M++EM+SL KN+TW LV  P   K +DCKW+FKIK+  S +EPP++
Sbjct: 1132 EAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDEPPKY 1191

Query: 1030 KARLVAKGFSQIEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEE 1209
            K+RLVAK            +FSPVVK+K+IR++LA+V+ ++L+L+QLDVKTAFLHG LEE
Sbjct: 1192 KSRLVAK------------VFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEE 1239

Query: 1210 TIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYF 1389
             IYM+QP GF +  K +  C LKKSLYGLKQSPRQWYKRFD+FM+   F+++ YDSC+YF
Sbjct: 1240 EIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYF 1299

Query: 1390 CGNNVETAIYLLLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRA 1569
                  + IYLLLYVDDMLIA K+R +IN LK LL SEF+MKDLG A +ILGM I RDR 
Sbjct: 1300 KTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRD 1359

Query: 1570 GRSLFISQKPFLQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMA 1749
               L++SQ+ +++K++  F M   KPV TPLA HFK    + P T++E   M  +PY   
Sbjct: 1360 AGLLYVSQQKYIEKLMQAFHMDHSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSVPYSSV 1419

Query: 1750 IGSVMYSMISTRPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSND 1929
            +GS+MY+M+ TRPD+A+++S++SRFM+NPG+ HW A+KW++RY+ G+    L+Y N    
Sbjct: 1420 VGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNGDVS 1479

Query: 1930 FELVGYVDSDYAGDHDGRKSTTSYFFTLAGNCI 2028
              LVG+ DSD+ GD   R+S T Y FTL G  I
Sbjct: 1480 SGLVGFTDSDHGGDLMKRRSLTCYIFTLFGCAI 1512


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  632 bits (1630), Expect = e-178
 Identities = 335/677 (49%), Positives = 431/677 (63%), Gaps = 1/677 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNGLE+CN  F   C   GIV H+T  + PQQNG+AER+NRTIMDKVR ++  SG+ K
Sbjct: 541  RTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEK 600

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EA STAVYLINRSPSTAINF  P E W+G  P+LS+LR FGC A++H  +GKL+PR
Sbjct: 601  KFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFGCLAYIHADQGKLNPR 660

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDM-PCLKAXXXXXXXXXXXXD 537
            S+KG+F  YP GVKGYKVW+  +   + ++SR+VIF EQ M   LK             D
Sbjct: 661  SKKGIFTSYPEGVKGYKVWVLEDK--KCVISRNVIFREQVMFKDLKGDSQNTISESDLED 718

Query: 538  GIVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQALR 717
              V  ++ +   + Q     ++S  S+                          A  + L 
Sbjct: 719  LRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNPVLNSPTHSQDEESEEEDSDA-VEDLS 777

Query: 718  DYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPNRSLWLRAME 897
             YQL RDR RR  +   +Y  S +V +A  +     + EP  + + L  P+   W  AM+
Sbjct: 778  TYQLVRDRVRRTIKANPKYNESNMVGFAYYSEDD-GKPEPKSYQEALLDPDWEKWNAAMK 836

Query: 898  EEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQIEGID 1077
            EEM S+ KN TW LV+KP K KLI C+W+F  K      E PRF ARLVAKGF+Q EG+D
Sbjct: 837  EEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVD 896

Query: 1078 FNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKE 1257
            +NEIFSPVVK+ +IR +L++V  Y+++L+Q+DVKTAFLHG LEE IYM QP GFE K   
Sbjct: 897  YNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGS 956

Query: 1258 NMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLLLYVD 1437
            N  CLLK+SLYGLKQSPRQW  RFD FM    + +S YDSC+YF   N +T IYLLLYVD
Sbjct: 957  NKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVD 1016

Query: 1438 DMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFLQKII 1617
            DMLIA  ++ ++N LK LL  EF+MKDLG A +ILGM I RDR    L +SQ+ +++K++
Sbjct: 1017 DMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVL 1076

Query: 1618 SKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTRPDIA 1797
              F M   KPV TPL  HFKL   +  + E++   M  +PY   IGS+MYSMI TRPD+A
Sbjct: 1077 RSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLA 1136

Query: 1798 YSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYAGDHD 1977
            YS+ ++SRFM+ P +DHW A+KW+LRY+ GT  + L +     DF L GY DSDY  + D
Sbjct: 1137 YSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRK-QEDFLLRGYCDSDYGSNFD 1195

Query: 1978 GRKSTTSYFFTLAGNCI 2028
             R+S T Y FT+ GN I
Sbjct: 1196 TRRSITGYVFTVGGNTI 1212


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  629 bits (1623), Expect = e-177
 Identities = 335/680 (49%), Positives = 434/680 (63%), Gaps = 6/680 (0%)
 Frame = +1

Query: 4    TDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPKP 183
            TDNG EFC+  F+D C   GIV H T+ H PQQNGVAERMNRTI+ + RC++  + + K 
Sbjct: 554  TDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKR 613

Query: 184  FWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRS 363
            FW EA STA YLINRSPS  +N KTP+E+WSG P + S L+VFGC A+ H   GKL+PR+
Sbjct: 614  FWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRA 673

Query: 364  RKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDGI 543
             K +FLGY SGVKGYK+W   E G +  +SR V+FNE  M                    
Sbjct: 674  VKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVM----------------FTNS 715

Query: 544  VPVEVENTSESSQPHDQPE----SSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQA 711
            +P E     E  + H Q E     +G                                Q 
Sbjct: 716  LPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDDAHDDVQQTPPILQL 775

Query: 712  LRDYQLSRDRARRETRKPARYGYSYIVSY-ACAAASFVEE-KEPMCFSDVLKSPNRSLWL 885
              D  +++ +++R T+ P R      +SY A + A  VE   EP  + + ++  +   W+
Sbjct: 776  EEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWI 835

Query: 886  RAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQI 1065
             AM EEM SL KN TW +V  P K+K I CKWIFK KE  S +EPP++KARLVA+G+SQI
Sbjct: 836  SAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQI 895

Query: 1066 EGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEE 1245
             G+D+N++FSPVVK+ +IR  L++VA +DL+LEQLDVKTAFLHGELEE IYM QP GF  
Sbjct: 896  PGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIV 955

Query: 1246 KGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLL 1425
             GKE   C LK+SLYGLKQSPRQW KRFDSFML   F +S YDSC+Y    N  + IYLL
Sbjct: 956  PGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLL 1014

Query: 1426 LYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFL 1605
            LYVDDMLIA K + +I  LK LL SEFDMKDLG+A +ILGM I RDR    LF+SQ  ++
Sbjct: 1015 LYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYI 1074

Query: 1606 QKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTR 1785
            +K++ +F+M   K V TP+A HFKLS   CP T+ E   M+ +PY  A+GS+MY+M+ +R
Sbjct: 1075 KKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSR 1134

Query: 1786 PDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYA 1965
            PD++Y++SL+SR+M+NPG++HW AL+W+ RY+ GT    L +     D  L+GYVDSDYA
Sbjct: 1135 PDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGR--TDKGLIGYVDSDYA 1192

Query: 1966 GDHDGRKSTTSYFFTLAGNC 2025
             D D R+S T Y FT+ G+C
Sbjct: 1193 ADLDRRRSLTGYVFTI-GSC 1211


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  626 bits (1615), Expect = e-176
 Identities = 333/681 (48%), Positives = 435/681 (63%), Gaps = 6/681 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG EFC+  F+D C   GIV H T+ H PQQNGVAERMNRTI+ + RC++  + + K
Sbjct: 551  RTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNK 610

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EA STA YLINRSPS  +N KTP+E+WSG P + S L+VFGC A+ H   GKL+PR
Sbjct: 611  RFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPR 670

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDG 540
            + K +FLGY SGVKGYK+W   E G +  +SR V+FNE  M                   
Sbjct: 671  AVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVM----------------FTN 712

Query: 541  IVPVEVENTSESSQPHDQPE----SSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
             +P E     E  + H Q E     +G                                Q
Sbjct: 713  SLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQ 772

Query: 709  ALRDYQLSRDRARRETRKPARYGYSYIVSY-ACAAASFVEE-KEPMCFSDVLKSPNRSLW 882
               +  +++ +++R T+ P R      +SY A + A  VE   EP  + + ++  +   W
Sbjct: 773  LEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENW 832

Query: 883  LRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQ 1062
            + AM EEM SL KN TW +V  P K+K I CKWIFK KE  S++EPP++KARLVA+G+SQ
Sbjct: 833  ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQ 892

Query: 1063 IEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFE 1242
            I G+D+N++FSPVVK+ +IR  L++VA +DL+LEQLDVKTAFLHGELEE IYM QP GF 
Sbjct: 893  IPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFI 952

Query: 1243 EKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYL 1422
              GKE   C LK+SLYGLKQSPRQW KRFDSFML   F +S YDSC+Y    N  + IYL
Sbjct: 953  VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYL 1011

Query: 1423 LLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPF 1602
            LLYVDDMLIA K + +I  LK LL SEFDMKDLG+A +ILGM I RDR    LF+SQ  +
Sbjct: 1012 LLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNY 1071

Query: 1603 LQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMIST 1782
            ++K++ +F+M   K V TP+A HFKLS   CP  + E   M+ +PY  A+GS+MY+M+ +
Sbjct: 1072 IKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCS 1131

Query: 1783 RPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDY 1962
            RPD++Y++SL+SR+M+NPG++HW A++W+ RY+ GT    L +     D  L+GYVDSDY
Sbjct: 1132 RPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGR--TDKGLIGYVDSDY 1189

Query: 1963 AGDHDGRKSTTSYFFTLAGNC 2025
            A D D R+S T Y FT+ G+C
Sbjct: 1190 AADLDRRRSLTGYVFTI-GSC 1209


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  626 bits (1614), Expect = e-176
 Identities = 333/681 (48%), Positives = 435/681 (63%), Gaps = 6/681 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG EFC+  F+D C   GIV H T+ H PQQNGVAERMNRTI+ + RC++  + + K
Sbjct: 551  RTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNK 610

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EA STA YLINRSPS  +N KTP+E+WSG P + S L+VFGC A+ H   GKL+PR
Sbjct: 611  RFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPR 670

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDG 540
            + K +FLGY SGVKGYK+W   E G +  +SR V+FNE  M                   
Sbjct: 671  AVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVM----------------FTN 712

Query: 541  IVPVEVENTSESSQPHDQPE----SSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
             +P E     E  + H Q E     +G                                Q
Sbjct: 713  SLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQ 772

Query: 709  ALRDYQLSRDRARRETRKPARYGYSYIVSY-ACAAASFVEE-KEPMCFSDVLKSPNRSLW 882
               +  +++ +++R T+ P R      +SY A + A  VE   EP  + + ++  +   W
Sbjct: 773  LEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENW 832

Query: 883  LRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQ 1062
            + AM EEM SL KN TW +V  P K+K I CKWIFK KE  S++EPP++KARLVA+G+SQ
Sbjct: 833  ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQ 892

Query: 1063 IEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFE 1242
            I G+D+N++FSPVVK+ +IR  L++VA +DL+LEQLDVKTAFLHGELEE IYM QP GF 
Sbjct: 893  IPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFI 952

Query: 1243 EKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYL 1422
              GKE   C LK+SLYGLKQSPRQW KRFDSFML   F +S YDSC+Y    N  + IYL
Sbjct: 953  VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYL 1011

Query: 1423 LLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPF 1602
            LLYVDDMLIA K + +I  LK LL SEFDMKDLG+A +ILGM I RDR    LF+SQ  +
Sbjct: 1012 LLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNY 1071

Query: 1603 LQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMIST 1782
            ++K++ +F+M   K V TP+A HFKLS   CP  + E   M+ +PY  A+GS+MY+M+ +
Sbjct: 1072 IKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCS 1131

Query: 1783 RPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDY 1962
            RPD++Y++SL+SR+M+NPG++HW A++W+ RY+ GT    L +     D  L+GYVDSDY
Sbjct: 1132 RPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGR--TDKGLIGYVDSDY 1189

Query: 1963 AGDHDGRKSTTSYFFTLAGNC 2025
            A D D R+S T Y FT+ G+C
Sbjct: 1190 AADLDRRRSLTGYVFTI-GSC 1209


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  624 bits (1608), Expect = e-176
 Identities = 332/676 (49%), Positives = 434/676 (64%), Gaps = 2/676 (0%)
 Frame = +1

Query: 4    TDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPKP 183
            TDNG EFC+  F D C   GIV H T+ + PQQNGVAERMNRTI+ K RC++ ++ + K 
Sbjct: 553  TDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKR 612

Query: 184  FWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPRS 363
            FW EA +TA YLINRSPS  +N KTP+E+WSG P + S LRVFGC A+ H   GKL+PR+
Sbjct: 613  FWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRA 672

Query: 364  RKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDGI 543
             K +FLGY SGVKGYK+W       +  +SR+VIFNE  M                    
Sbjct: 673  IKCLFLGYGSGVKGYKLW--NPETNKTFMSRNVIFNEFVMFNDSLPTDVIPGGSDEEQQY 730

Query: 544  VPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQALRDY 723
            V V+VE+        DQ      +D+                               +D 
Sbjct: 731  VSVQVEHVD------DQETEIVGNDVNDTVQHSPSVLQP------------------QDE 766

Query: 724  QLSRDRARRETRKPARYGYSY-IVSYACAAASFVEEK-EPMCFSDVLKSPNRSLWLRAME 897
             ++  R +R    P R      +V YA + A  VE   EP  +++ + S +R  W+ A++
Sbjct: 767  PIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQ 826

Query: 898  EEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQIEGID 1077
            EEM SL KN TW LV  P ++K + CKWIFK KE  S +EPPRFK RLVAKGFSQI G+D
Sbjct: 827  EEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVD 886

Query: 1078 FNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGKE 1257
            +N++FSPVVK+ +IR   ++V  +DL+LEQLDVKT FLHGELEE IYM QP GF   GKE
Sbjct: 887  YNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKE 946

Query: 1258 NMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLLLYVD 1437
            +  C LK+SLYGLKQSPRQWYKRFDSFML  GF +S +DSC+Y    N  + IYLLLYVD
Sbjct: 947  DYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVD 1005

Query: 1438 DMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFLQKII 1617
            DMLIA K +++I  LK  L SEFDMKDLG A +ILGM I RDR    LF+SQ+ +++K++
Sbjct: 1006 DMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVL 1065

Query: 1618 SKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTRPDIA 1797
             +F+MH  KPV TP+A HFKLS   C  T+++   M+ +PY  A+GS+MY+M+ + PD++
Sbjct: 1066 QRFNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLS 1125

Query: 1798 YSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYAGDHD 1977
            +++SL+SR+MANPG++HW A++W+ RY+ GT D  L +     D  LVGYVDSD+A D D
Sbjct: 1126 HAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGR--IDKGLVGYVDSDFAADLD 1183

Query: 1978 GRKSTTSYFFTLAGNC 2025
             R+S T Y FT+ G+C
Sbjct: 1184 KRRSLTGYVFTI-GSC 1198


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  623 bits (1607), Expect = e-176
 Identities = 332/681 (48%), Positives = 434/681 (63%), Gaps = 6/681 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG EFC+  F+D C   GIV H T+ H PQQNGVAERMNRTI+ + RC++  + + K
Sbjct: 551  RTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNK 610

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EA STA YLINRSPS  +N KTP+E+WSG P + S L+VFGC A+ H   GKL+PR
Sbjct: 611  RFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPR 670

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDG 540
            + K +FLGY SGVKGYK+W   E G +  +SR V+FNE  M                   
Sbjct: 671  AVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVM----------------FTN 712

Query: 541  IVPVEVENTSESSQPHDQPES----SGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
             +P E     E  + H Q E     +G                                Q
Sbjct: 713  SLPSEHVPEKELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQ 772

Query: 709  ALRDYQLSRDRARRETRKPARYGYSYIVSY-ACAAASFVEE-KEPMCFSDVLKSPNRSLW 882
               +  +++ +++R T+ P R      +SY A + A  VE   EP  + + ++  +   W
Sbjct: 773  LEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENW 832

Query: 883  LRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQ 1062
            + AM EEM SL KN TW +V  P K+K I CKWIFK KE  S++EPP++KARLVA+G+SQ
Sbjct: 833  ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQ 892

Query: 1063 IEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFE 1242
            I G+D+N++FSPVVK+ +IR  L++VA +DL+LEQLDVKTAFLHGELEE IYM QP GF 
Sbjct: 893  IPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFI 952

Query: 1243 EKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYL 1422
              GKE   C LK+SLYGLKQSPRQW KRFDSFML   F +S YDSC+Y    N  + IYL
Sbjct: 953  VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYL 1011

Query: 1423 LLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPF 1602
            LLYVDDMLIA K + +I  LK LL SEFDMKDLG+A +IL M I RDR    LF+SQ  +
Sbjct: 1012 LLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNY 1071

Query: 1603 LQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMIST 1782
            ++K++ +F+M   K V TP+A HFKLS   CP T+ E   M+ +PY  A+GS+MY+M+ +
Sbjct: 1072 IKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCS 1131

Query: 1783 RPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDY 1962
            RPD++Y++SL+SR+M+NPG++HW  ++W+ RY+ GT    L +     D  L+GYVDSDY
Sbjct: 1132 RPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGR--TDKGLIGYVDSDY 1189

Query: 1963 AGDHDGRKSTTSYFFTLAGNC 2025
            A D D R+S T Y FT+ G+C
Sbjct: 1190 AADLDRRRSLTGYVFTI-GSC 1209


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  617 bits (1590), Expect = e-174
 Identities = 328/677 (48%), Positives = 430/677 (63%), Gaps = 2/677 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDN  EFC+  F D C   GIV H T+ + PQQNGVAERMNRTI+ K RC++ ++ + K
Sbjct: 552  RTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNK 611

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EA +TA YLINRSPS  +N KTP+E+WSG P + S LRVFGC A+ H    KL+PR
Sbjct: 612  RFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPR 671

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDG 540
            + K +FLGY  GVKGYK+W       +  +SR V+FNE  M                   
Sbjct: 672  AIKCLFLGYGLGVKGYKLW--NPETNKTFMSRSVVFNESVMFNDSLPTDVIPGGSDEEQQ 729

Query: 541  IVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQALRD 720
             V V+VE+        DQ      +D+                               +D
Sbjct: 730  YVSVQVEHVD------DQETEIVGNDVNDTVQHSPPVLQP------------------QD 765

Query: 721  YQLSRDRARRETRKPARYGYSY-IVSYACAAASFVEEK-EPMCFSDVLKSPNRSLWLRAM 894
              ++  R +R    P R      +V YA + A  VE   EP  +++ + S +R  W+ AM
Sbjct: 766  EPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISAM 825

Query: 895  EEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQIEGI 1074
            +EEM SL KN TW LV  P ++K + CKWIFK KE  S +EPPRFKARLVAKGFSQI G+
Sbjct: 826  QEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVGV 885

Query: 1075 DFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEKGK 1254
            D+N++FSPVVK+ +IR   ++VA +DL+LEQLDVKTAFLHGELEE IYM QP GF   GK
Sbjct: 886  DYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGK 945

Query: 1255 ENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLLLYV 1434
            E+  C LK+SLYGLKQSPRQWYKRFDSFML  GF +S +DSC+Y    N  + IYLLLYV
Sbjct: 946  EDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYV 1004

Query: 1435 DDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFLQKI 1614
            DD+LIA K +++I  LK  L SEFDMKDLG A +ILGM I RD+    LF+SQ+ +++K+
Sbjct: 1005 DDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDKNSGLLFLSQQSYIKKV 1064

Query: 1615 ISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTRPDI 1794
            +  F+MH  KPV TP+A HFKLS   C  T+++   M+ +PY  A+GS+MY+M+ +RPD+
Sbjct: 1065 LQCFNMHDAKPVSTPIAPHFKLSALQCANTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDL 1124

Query: 1795 AYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYAGDH 1974
            ++++SL+SR+M NPG++HW A++W+ RY+ GT D  L +     D  L+GYVDSD+A D 
Sbjct: 1125 SHAMSLVSRYMTNPGKEHWKAVQWIFRYLRGTADACLKFGR--TDKGLIGYVDSDFAADL 1182

Query: 1975 DGRKSTTSYFFTLAGNC 2025
            D R+S T Y   +A  C
Sbjct: 1183 DKRRSLTEY-MAIAETC 1198


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  608 bits (1567), Expect = e-171
 Identities = 323/686 (47%), Positives = 441/686 (64%), Gaps = 10/686 (1%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG E+ + +F   C   GIV   TV H PQQNGVAERMNRT++++ R ++ ++G+ K
Sbjct: 548  RTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAK 607

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFV---HQKEGKL 351
             FW EAV TA Y+INRSPSTAI+ KTP+EMW G+P + S+L VFGC  +V    Q+  KL
Sbjct: 608  SFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKL 667

Query: 352  DPRSRKGVFLGYPSGVKGYKVWLKGEPGIR-VLVSRDVIFNEQDMPCLKAXXXXXXXXXX 528
            DP+SRK +FLGY   VKGY++W   +P  R V+VSRDV+F E ++   +           
Sbjct: 668  DPKSRKCIFLGYADNVKGYRLW---DPTARKVVVSRDVVFAENELQSKQKN--------- 715

Query: 529  XXDGIVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
                      ++TS+ +      E S  SD                          ++A+
Sbjct: 716  ----------DSTSKETAIVQMEEKSKESD-------------------------SSEAE 740

Query: 709  ALRDYQLSRD------RARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPN 870
             + + Q   D      R+ R+T+KP+ +   Y+++   A     EE EP  F + L   +
Sbjct: 741  PVHEEQEPDDVNNGVRRSTRQTQKPS-WQSDYVMTSHDAYCLITEEGEPSTFHEALNGSD 799

Query: 871  RSLWLRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAK 1050
             S W+ AM EEM +LH+NKTW LV  P  +K I  KW++KIK  +  ++  R++ARLV K
Sbjct: 800  ASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKR-DGNDQVERYRARLVVK 858

Query: 1051 GFSQIEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQP 1230
            G++Q EGIDFNEIFSPVV+  TIR++LA+ A  DL LEQLDVKTAFLHGELEE IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 1231 PGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVET 1410
             GF+E+GKEN+ C L KSLYGLKQ+PR WYKRFDSF++   + + + D C Y+   +   
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGND 978

Query: 1411 AIYLLLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFIS 1590
             I LLLYVDDML+   ++D++  LK+ L  EFDMKDLG A++ILGM I RDR  R +++S
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLS 1038

Query: 1591 QKPFLQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYS 1770
            QK +L+K++ +F+M  CKP+ TPL  +FKLS    P  E E+ EM+ +PY  A+GS+MY+
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 1771 MISTRPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYV 1950
            MI TRPDIA ++ ++SRFMA+PG++HW A+K ++RYI GT   G+      ++  + GYV
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGT--SGVAVCFGGSELTVRGYV 1156

Query: 1951 DSDYAGDHDGRKSTTSYFFTLAGNCI 2028
            DSD+AGDHD RKSTT Y FTLAG  +
Sbjct: 1157 DSDFAGDHDKRKSTTGYVFTLAGGAV 1182


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  607 bits (1564), Expect = e-171
 Identities = 322/686 (46%), Positives = 442/686 (64%), Gaps = 10/686 (1%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG E+ + +F   C   GIV   TV H PQQNGVAERMNRT++++ R ++ ++G+ K
Sbjct: 548  RTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAK 607

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFV---HQKEGKL 351
             FW EA  TA Y+INRSPSTAI+ KTP+EMW G+P + S+L VFGC  +V    Q++ KL
Sbjct: 608  SFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKL 667

Query: 352  DPRSRKGVFLGYPSGVKGYKVWLKGEPGIR-VLVSRDVIFNEQDMPCLKAXXXXXXXXXX 528
            DP+SRK +FLGY   VKGY++W   +P  R V+VSRDV+F E ++   +           
Sbjct: 668  DPKSRKCIFLGYADNVKGYRLW---DPTARKVVVSRDVVFAENELQSEQKN--------- 715

Query: 529  XXDGIVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
                      ++TS+ +      E S  SD                          ++A+
Sbjct: 716  ----------DSTSKETAIVQMEEKSKESD-------------------------SSEAE 740

Query: 709  ALRDYQLSRD------RARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPN 870
            ++ + Q   D      R+ R+T+KP+ +   Y+++   A     EE EP  F + L   +
Sbjct: 741  SVHEEQEPDDVNDGVRRSTRQTQKPS-WQSDYVMTSHDAYCLITEEGEPSTFHEALNGSD 799

Query: 871  RSLWLRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAK 1050
             S W+ AM EEM +LH+NKTW LV  P  +K I  KW++KIK  +  ++  R++ARLV K
Sbjct: 800  ASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKR-DGNDQVERYRARLVVK 858

Query: 1051 GFSQIEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQP 1230
            G++Q EGIDFNEIFSPVV+  TIR++LA+ A  DL LEQLDVKTAFLHGELEE IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 1231 PGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVET 1410
             GF+E+GKEN+ C L KSLYGLKQ+PR WYKRFDSF++   + + + D C Y+   +   
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGND 978

Query: 1411 AIYLLLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFIS 1590
             I LLLYVDDML+   ++D++  LK+ L  EFDMKDLG A++ILGM I RDR  R +++S
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLS 1038

Query: 1591 QKPFLQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYS 1770
            QK +L+K++ +F+M  CKP+ TPL  +FKLS    P  E E+ EM+ +PY  A+GS+MY+
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 1771 MISTRPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYV 1950
            MI TRPDIA ++ ++SRFMA+PG++HW A+K ++RYI GT   G+      ++  + GYV
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGT--SGVAVCFGGSELTVWGYV 1156

Query: 1951 DSDYAGDHDGRKSTTSYFFTLAGNCI 2028
            DSD+AGDHD RKSTT Y FTLAG  +
Sbjct: 1157 DSDFAGDHDKRKSTTGYVFTLAGGAV 1182


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  606 bits (1562), Expect = e-170
 Identities = 322/686 (46%), Positives = 441/686 (64%), Gaps = 10/686 (1%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG E+ + +F   C   GIV   TV H PQQNGVAERMNRT++++ R ++ ++G+ K
Sbjct: 548  RTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAK 607

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFV---HQKEGKL 351
             FW EAV TA Y+INRSPSTAI+ KTP+EMW G+P + S+L VFGC  +V    Q+  KL
Sbjct: 608  SFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKL 667

Query: 352  DPRSRKGVFLGYPSGVKGYKVWLKGEPGIR-VLVSRDVIFNEQDMPCLKAXXXXXXXXXX 528
            DP+SRK +FLGY   VKGY++W   +P  R V+VSRDV+F E ++   +           
Sbjct: 668  DPKSRKCIFLGYADNVKGYRLW---DPTARKVVVSRDVVFAENELQSEQKN--------- 715

Query: 529  XXDGIVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
                      ++TS+ +      E S  SD                          ++A+
Sbjct: 716  ----------DSTSKETAIVQMEEKSKESD-------------------------SSEAE 740

Query: 709  ALRDYQLSRD------RARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPN 870
            ++ + Q   D      R+ R+T+KP+ +   Y+++   A     EE EP  F + L   +
Sbjct: 741  SVHEEQEPDDVNDGVRRSTRQTQKPS-WQSDYVMTSHDAYCLITEEGEPSTFHEALNGSD 799

Query: 871  RSLWLRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAK 1050
             S W+ AM EEM +LH+NKTW LV  P  +K I  KW++KIK  +  ++  R++ARLV K
Sbjct: 800  ASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKR-DGNDQVERYRARLVVK 858

Query: 1051 GFSQIEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQP 1230
            G++Q EGIDFNEIFSPVV+  TIR++LA+ A  DL LEQLDVKTAFLHGELEE IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 1231 PGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVET 1410
             GF+E+GKEN+ C L KSLYGLKQ+PR WYKRFDSF++   + + + D C Y+   +   
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGND 978

Query: 1411 AIYLLLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFIS 1590
             I LLLYVDDML+   ++D++  LK+ L  EFDMKDLG A++ILGM I RDR    +++S
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLS 1038

Query: 1591 QKPFLQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYS 1770
            QK +L+K++ +F+M  CKP+ TPL  +FKLS    P  E E+ EM+ +PY  A+GS+MY+
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 1771 MISTRPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYV 1950
            MI TRPDIA ++ ++SRFMA+PG++HW A+K ++RYI GT   G+      ++  + GYV
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGT--SGVAVCFGGSELTVRGYV 1156

Query: 1951 DSDYAGDHDGRKSTTSYFFTLAGNCI 2028
            DSD+AGDHD RKSTT Y FTLAG  +
Sbjct: 1157 DSDFAGDHDKRKSTTGYVFTLAGGAV 1182


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  605 bits (1559), Expect = e-170
 Identities = 322/680 (47%), Positives = 431/680 (63%), Gaps = 4/680 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG E+ + +F   C   GI    TV + PQQNGVAERMNRT+ +++R ++ ++G+P 
Sbjct: 548  RTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPN 607

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVH---QKEGKL 351
             FW EA  TA Y++NRSPSTAI  KT +EMW+G+P + S L  FGC  +V    Q+  KL
Sbjct: 608  SFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPADYSYLHAFGCPVYVMYNAQERTKL 667

Query: 352  DPRSRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXX 531
            DP+SRK +FLGY  GVKGY++W       ++++SRDVIF E  +                
Sbjct: 668  DPKSRKCIFLGYADGVKGYRLW--DPTAHKIVISRDVIFVEDQLQ----RKDGDDGTVKE 721

Query: 532  XDGIVPVEVENTSESSQPHDQ-PESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
                VPV VEN  E+S   +  PE      +                         ++A 
Sbjct: 722  KSETVPVYVENNPENSDSSEAAPEHEEQEPVE------------------------SEAP 757

Query: 709  ALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPNRSLWLR 888
             +R       R+ RE R+P  +   Y+     A     E+ EP  F + L S + +LW+ 
Sbjct: 758  EVR-------RSTRE-RRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSLDVALWMT 809

Query: 889  AMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQIE 1068
            AM+EE+ +LHKNKTW LV  P  +K I  KW++KIK  +  ++  R++ARLV KG++Q E
Sbjct: 810  AMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKE 868

Query: 1069 GIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEK 1248
            GIDFNEIFSPVV+  T+RI+LA+ A +DL LEQLDVKTAFLHGELEE IYM QP GF E 
Sbjct: 869  GIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAET 928

Query: 1249 GKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLLL 1428
            GKEN+ C L KSLYGLKQ+PR WYKRFDSF++  G+ + + D C Y+        I LLL
Sbjct: 929  GKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLL 988

Query: 1429 YVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFLQ 1608
            YVDDML+A  ++D+I  LK+ L  EF+MKDLG A++ILGM I RDR  R +++SQK +L+
Sbjct: 989  YVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKNYLK 1048

Query: 1609 KIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTRP 1788
            KI+ +F+M  CK + TPL  +FKLS   CP  E E+ EM+ +PY  A+GS+M++MI TRP
Sbjct: 1049 KILRRFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRP 1108

Query: 1789 DIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYAG 1968
            DIA ++  +SR+MANPG +HW A+K +LRYI GT +  L Y    ++F + GYVDSD+AG
Sbjct: 1109 DIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCY--GGSEFTVRGYVDSDFAG 1166

Query: 1969 DHDGRKSTTSYFFTLAGNCI 2028
            D D RKSTT Y FTLAG  +
Sbjct: 1167 DLDKRKSTTGYVFTLAGAAV 1186


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  599 bits (1545), Expect = e-168
 Identities = 316/686 (46%), Positives = 432/686 (62%), Gaps = 10/686 (1%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNGLEFCN+ F + C+  GI+ HRT  + PQQNGVAERMNRT+M+KVR ++  SG+PK
Sbjct: 543  RTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVRSMLSDSGLPK 602

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGKLDPR 360
             FW EA  T   LIN++PS+A+N++ P + WSG+ P  S LR FGC AFVH  +GKL+PR
Sbjct: 603  KFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYSYLRRFGCIAFVHTDDGKLNPR 662

Query: 361  SRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXXXDG 540
            ++KG+ +GYP GVKGYK+WL  E   + +VSR+VIF E                    D 
Sbjct: 663  AKKGILVGYPIGVKGYKIWLLEEK--KCVVSRNVIFQEN---------------ASYKDM 705

Query: 541  IVPVEVENTSESSQP---------HDQPESSGTSD-IXXXXXXXXXXXXXXXXXXXXXXX 690
            +   + E     + P         H++  +SG  D I                       
Sbjct: 706  MQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQSPFNPSPATTQTYSEGVNS 765

Query: 691  XXAQAQALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPN 870
                 Q+   YQL RDR RR  R P R+     ++ A        E EP  +S+  +S N
Sbjct: 766  ETDIIQSPLSYQLVRDRDRRTIRAPVRFDDEDYLAEALYTTEDSGEIEPADYSEAKRSMN 825

Query: 871  RSLWLRAMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAK 1050
             + W  AM EEM S  KN TW +V +P  QK+I  +WI+K K      E  RFKARLVAK
Sbjct: 826  WNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKLGIPGVEEGRFKARLVAK 885

Query: 1051 GFSQIEGIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQP 1230
            G++Q +GID++EIF+PVVK+ +IRI++++VA  DL+LEQLDVKTAFLHGEL+E IYM  P
Sbjct: 886  GYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTAFLHGELKEKIYMVPP 945

Query: 1231 PGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVET 1410
             G+EE  KE+  CLL KSLYGLKQ+P+QW ++F+++M + GFI+S YDSC Y    +  +
Sbjct: 946  EGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYDSCAYIKELSDGS 1005

Query: 1411 AIYLLLYVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFIS 1590
             +YLLLYVDDML+A K+++ I+ LK  L   FDMKDLG A RILGM I R+R   +L++S
Sbjct: 1006 RVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWLS 1065

Query: 1591 QKPFLQKIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYS 1770
            Q  +L KI+  ++M   K V TPL +H K+   +  K E++++ M  IPY  A+GS+MY+
Sbjct: 1066 QNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQDEDYMKSIPYSSAVGSIMYA 1125

Query: 1771 MISTRPDIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYV 1950
            MI TRPD+AY + ++SR+M+ P R+HW  +KW+LRYI G++   L Y   S+DF++VGY 
Sbjct: 1126 MIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGSLGTKLQYKR-SSDFKVVGYC 1184

Query: 1951 DSDYAGDHDGRKSTTSYFFTLAGNCI 2028
            D+D+A   D R+S T   FTL G+ I
Sbjct: 1185 DADHAACKDRRRSITGLVFTLGGSTI 1210


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  598 bits (1542), Expect = e-168
 Identities = 319/680 (46%), Positives = 429/680 (63%), Gaps = 4/680 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG E+ + +F   C   GI    TV + PQQNGVAERMNRT+ +++R ++ ++G+P 
Sbjct: 548  RTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPN 607

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVH---QKEGKL 351
             FW EA  TA Y++NRSPSTAI  KT +EMW+G+P + S L  FGC  +V    Q+  KL
Sbjct: 608  SFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPADYSYLHAFGCPMYVMYNAQERTKL 667

Query: 352  DPRSRKGVFLGYPSGVKGYKVWLKGEPGIRVLVSRDVIFNEQDMPCLKAXXXXXXXXXXX 531
            D +SR+ +FLGY  GVKGY++W       ++++SRDVIF E  +                
Sbjct: 668  DAKSRRCIFLGYADGVKGYRLW--DPTAHKIVISRDVIFVEDQLQ----RKDGDDGTVKE 721

Query: 532  XDGIVPVEVENTSESSQPHDQ-PESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
                VPV VEN  E+S   +  PE      +                         ++A 
Sbjct: 722  KSETVPVYVENNPENSDSSEAAPEHEEQEPVE------------------------SEAP 757

Query: 709  ALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPNRSLWLR 888
             +R       R+ RE R+P  +   Y+     A     E+ EP  F + L S + +LW+ 
Sbjct: 758  EVR-------RSTRE-RRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSSDVALWMT 809

Query: 889  AMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQIE 1068
            AM+EE+ +LHKNKTW LV  P  +K I  KW++KIK  +  ++  R++ARLV KG++Q E
Sbjct: 810  AMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKE 868

Query: 1069 GIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEK 1248
            GIDFNEIFSPVV+  T+RI+LA+ A +DL LEQLDVKTAFLHGELEE IYM QP GF E 
Sbjct: 869  GIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAET 928

Query: 1249 GKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLLL 1428
            GKEN+ C L KSLYGLKQ+PR WYKRFDSF++  G+ + + D C Y+        I LLL
Sbjct: 929  GKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLL 988

Query: 1429 YVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFLQ 1608
            YVDDML+A  ++D+I  LK+ L  EF+MKDLG A++ILGM I RDR    +++SQK +L+
Sbjct: 989  YVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKNYLK 1048

Query: 1609 KIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTRP 1788
            KI+ +F+M  CK + T L  +FKLS   CP  E E+ EM+ +PY  A+GS+M++MI TRP
Sbjct: 1049 KILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRP 1108

Query: 1789 DIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYAG 1968
            DIA ++ ++SR+MANPG +HW A+K +LRYI GT D  L Y    ++F + GYVDSD+AG
Sbjct: 1109 DIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCY--GGSEFTVRGYVDSDFAG 1166

Query: 1969 DHDGRKSTTSYFFTLAGNCI 2028
            D D RKSTT Y FTLAG  +
Sbjct: 1167 DLDKRKSTTGYVFTLAGAAV 1186


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  597 bits (1540), Expect = e-168
 Identities = 318/680 (46%), Positives = 428/680 (62%), Gaps = 4/680 (0%)
 Frame = +1

Query: 1    RTDNGLEFCNKKFSDLCALHGIVHHRTVRHNPQQNGVAERMNRTIMDKVRCLVVSSGVPK 180
            RTDNG E+ +  F   C   GI    TV H PQQNGVAERMNRT++++ R ++ ++G+ K
Sbjct: 548  RTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGLAK 607

Query: 181  PFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFV---HQKEGKL 351
             FW EA  TA Y+INRSPSTAI  KTP+EMW G+P + S+LRVFGC  +V    Q+  KL
Sbjct: 608  SFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGDYSSLRVFGCPVYVMYNSQERTKL 667

Query: 352  DPRSRKGVFLGYPSGVKGYKVWLKGEPGIR-VLVSRDVIFNEQDMPCLKAXXXXXXXXXX 528
            DP+SR+  FLGY   VKGY++W   +P  R + VSRDVIF E ++   K           
Sbjct: 668  DPKSRRCTFLGYADNVKGYRLW---DPTARKIFVSRDVIFVENELQ--KEQKNDGTTKET 722

Query: 529  XXDGIVPVEVENTSESSQPHDQPESSGTSDIXXXXXXXXXXXXXXXXXXXXXXXXXAQAQ 708
                I     E  SE+   H++ E +  +D                              
Sbjct: 723  ATVEIEEKSGEENSEAEPEHEEQEPNEVNDAEPR-------------------------- 756

Query: 709  ALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPNRSLWLR 888
                      R  R+ RKP+ +   Y+++   A     E+ EP  F + +   + SLW+ 
Sbjct: 757  ----------RTTRQIRKPSWHS-EYVMASHDAYCLLSEDGEPSTFHEAVNGSDASLWMA 805

Query: 889  AMEEEMSSLHKNKTWILVSKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQIE 1068
            AM+EE+ +LH+N TW LV  P  +K I  KW+FKIK  +  ++  R++ARLV KG++Q E
Sbjct: 806  AMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKR-DGNDQVERYRARLVVKGYAQKE 864

Query: 1069 GIDFNEIFSPVVKYKTIRIMLALVAFYDLDLEQLDVKTAFLHGELEETIYMRQPPGFEEK 1248
            GIDFNEIFSPVV+  TIRI+LA+ A ++L LEQLDVKTAFLHGELEE IYM QP GFEEK
Sbjct: 865  GIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEK 924

Query: 1249 GKENMACLLKKSLYGLKQSPRQWYKRFDSFMLKAGFIKSNYDSCLYFCGNNVETAIYLLL 1428
             +EN+ C L KSLYGLKQ+PR WYKRFDSF++  G+ + + D C Y+   +    I LLL
Sbjct: 925  ERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFIILLL 984

Query: 1429 YVDDMLIACKHRDKINHLKSLLKSEFDMKDLGTASRILGMNIRRDRAGRSLFISQKPFLQ 1608
            YVDDML+   ++D++  LK+ L  EFDMKDLG A++ILGM I RDR  R +++SQK +LQ
Sbjct: 985  YVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQ 1044

Query: 1609 KIISKFSMHLCKPVCTPLASHFKLSEKSCPKTEKEKNEMAHIPYRMAIGSVMYSMISTRP 1788
            K++ +F+M    P+ TPL  ++KLS    P +E E+ EM+ +PY  A+GS+MY+MI TRP
Sbjct: 1045 KVLRRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRP 1104

Query: 1789 DIAYSISLLSRFMANPGRDHWAALKWLLRYINGTIDRGLLYHNWSNDFELVGYVDSDYAG 1968
            DIA ++  +SRFMA+PG++HW A+K +LRYI GT    L +    ++F + GYVDSD+AG
Sbjct: 1105 DIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCF--GGSEFTIRGYVDSDFAG 1162

Query: 1969 DHDGRKSTTSYFFTLAGNCI 2028
            D D RKSTT Y FTLAG  +
Sbjct: 1163 DLDKRKSTTGYVFTLAGGAV 1182