BLASTX nr result
ID: Catharanthus22_contig00000133
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00000133
(1362 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera] 177 7e-42
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 163 1e-37
gb|EOY22705.1| Transducin/WD40 repeat-like superfamily protein [... 155 5e-35
gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao] 154 6e-35
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera] 152 2e-34
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 152 4e-34
emb|CAN74741.1| hypothetical protein VITISV_025583 [Vitis vinifera] 150 9e-34
gb|EOY34202.1| Uncharacterized protein TCM_041944 [Theobroma cacao] 144 9e-32
gb|AAK29467.1| polyprotein-like [Solanum chilense] 141 6e-31
ref|XP_003625577.1| Ubiquitin-protein ligase [Medicago truncatul... 140 2e-30
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 139 3e-30
ref|XP_003613324.1| Cc-nbs-lrr resistance protein [Medicago trun... 137 8e-30
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 137 1e-29
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 136 2e-29
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 135 4e-29
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 135 5e-29
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 135 5e-29
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 134 9e-29
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 134 1e-28
ref|XP_004165166.1| PREDICTED: uncharacterized protein LOC101225... 130 1e-27
>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
Length = 939
Score = 177 bits (450), Expect = 7e-42
Identities = 89/198 (44%), Positives = 135/198 (68%)
Frame = -2
Query: 671 KTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDAHSCLT 492
K+E ++F GK+DF +WR +MKA+L Q A+ + P + + S+ A+ +
Sbjct: 5 KSEIERFIGKNDFNVWRMRMKAILFQQGVKDALKDESELPVTMTAKEKSDIDEKAYHLII 64
Query: 491 LHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLSENIDD 312
L L D LRE E+ A +W KLE+LY+ SLSN++YLKE+L+GFKM +S+++N+DD
Sbjct: 65 LALGDKALREFSEETTAKGVWNKLEQLYMQNSLSNRLYLKERLYGFKMQEDRSIADNLDD 124
Query: 311 LNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNALKSKDL 132
KIVLE+ N+G K+ DE+ AV++L SLP +++ K +KYGR LTL +V++AL+SK+L
Sbjct: 125 FAKIVLEMSNIGIKVDDEDKAVLVLKSLPGLYSNFKETMKYGRKTLTLEEVQSALRSKEL 184
Query: 131 DLRKENKSNGENLYVRGR 78
+L+K+ SNGE L +RGR
Sbjct: 185 ELKKKG-SNGEGLSIRGR 201
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 163 bits (413), Expect = 1e-37
Identities = 86/208 (41%), Positives = 134/208 (64%), Gaps = 1/208 (0%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDAH 504
M K + +KF GK+DF + R KM+A+LVQ A+ P + + + E L AH
Sbjct: 1 MGTAKFDVEKFTGKNDFGLXRLKMRALLVQQGLQDALLGEKNLPSTMQEKQKIELLEKAH 60
Query: 503 SCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLSE 324
S + L L D VLRE + +A E+W KLE LY+ KSL+N+++ K +L+ FKM+ S+
Sbjct: 61 SAIILSLGDTVLREXAKAKSAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIEX 120
Query: 323 NIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNALK 144
++D NKI+L+L+N+ ISDE+ A++LL SL S+ ++K AI YGRD LT +V++ L
Sbjct: 121 HLDHFNKIILDLENIDITISDEDKAILLLTSLDASYTNMKDAIMYGRDSLTFDEVQSILH 180
Query: 143 SKDLDLRKENK-SNGENLYVRGRVDRRE 63
+++L ++E+K +GE L +RGR ++RE
Sbjct: 181 ARELQKQEESKEESGEGLNIRGRSEKRE 208
>gb|EOY22705.1| Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
Length = 1029
Score = 155 bits (391), Expect = 5e-35
Identities = 77/201 (38%), Positives = 129/201 (64%), Gaps = 5/201 (2%)
Frame = -2
Query: 689 LTMSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGD 510
+ S K E +KF+G++DF +WR KM+A+LVQ A+ + P + + +
Sbjct: 123 MATSSTKYEIEKFNGRNDFSLWRVKMRALLVQQGLLKALKGKEHLPSNLSDGEKDDLMKK 182
Query: 509 AHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSL 330
AHS + L L+D VLRE+ ++++A +W KLE +Y+ KSL+N++Y+K++L+ KMS S+
Sbjct: 183 AHSVILLALSDEVLREVTDEESAAAVWFKLESIYMTKSLTNRLYMKQRLYTLKMSEGTSV 242
Query: 329 SENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNA 150
+ +ID+ N+++L+L+N+ KI DE++A+ILL LP S+ + + YGRD LT DV+ +
Sbjct: 243 NTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLTFEDVRAS 302
Query: 149 LKSKDL-----DLRKENKSNG 102
L K+L +R EN++ G
Sbjct: 303 LNFKELKKKVGGIRNENQAEG 323
>gb|EOY09126.1| Uncharacterized protein TCM_024518 [Theobroma cacao]
Length = 277
Score = 154 bits (390), Expect = 6e-35
Identities = 78/201 (38%), Positives = 128/201 (63%), Gaps = 5/201 (2%)
Frame = -2
Query: 689 LTMSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGD 510
+ S K E +KF+G++DF +WR KM A+LVQ A+ + P + + +
Sbjct: 1 MATSSTKYEIEKFNGRNDFSLWRVKMCALLVQQGLLKALKGKEHLPSNLSDSEKDDLMEK 60
Query: 509 AHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSL 330
AHS + L L+D VLRE+ ++++A +W KLE +Y+ KSL+N++Y+K++L+ KMS S+
Sbjct: 61 AHSAILLTLSDEVLREVTDEESAAAMWFKLESIYITKSLTNRLYMKQRLYTLKMSEGTSV 120
Query: 329 SENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNA 150
+ +ID+ N+++L+L+N+ KI DE++A+ILL LP S+ + + YGRD LT DV+
Sbjct: 121 NTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLTFEDVRAY 180
Query: 149 LKSKDL-----DLRKENKSNG 102
L SK+L +R EN++ G
Sbjct: 181 LNSKELKKKVGGIRNENQAEG 201
>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
Length = 894
Score = 152 bits (385), Expect = 2e-34
Identities = 81/208 (38%), Positives = 132/208 (63%), Gaps = 1/208 (0%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDAH 504
M K + +KF GK+DF +WR KM+A+LVQ A+ P + + + E L AH
Sbjct: 1 MGTVKFDVEKFTGKNDFGLWRLKMRALLVQQGLQDALLGEKNLPXTMQEKHKIELLEKAH 60
Query: 503 SCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLSE 324
+ L L D LRE+ + +A ++ KLE LY+ KSL+N+++ +L+ FKM+ S S+ E
Sbjct: 61 GAIILSLGDTXLREVAKAKSAAKLLLKLESLYMTKSLANRLHKXIKLYTFKMTPSMSIEE 120
Query: 323 NIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNALK 144
++D NKI+L+L+N+ +S+E+ A++LL SL S+ ++K AI YGRD LT +V++ L
Sbjct: 121 HLDHFNKIILDLKNIDIAVSNEDKAILLLTSLDASYTNMKEAIMYGRDILTFDEVQSILH 180
Query: 143 SKDLDLRKENKSN-GENLYVRGRVDRRE 63
+++L ++E+K GE L +RG+ +RE
Sbjct: 181 ARELHKQEESKEELGEGLNIRGKSKKRE 208
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 152 bits (383), Expect = 4e-34
Identities = 77/184 (41%), Positives = 115/184 (62%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDAH 504
MS QK E +KF+G +DF +W+ KMKA+LVQ K A AI + P E + AH
Sbjct: 1 MSSQKFEVEKFNGSNDFTLWKLKMKALLVQQKCAQAIEGEETLPVGLTAVEKEEVVSRAH 60
Query: 503 SCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLSE 324
S + L L D VLRE+ ++ A +W K E Y KSL+N++Y K QL KMS + +
Sbjct: 61 SAILLSLADEVLREVADETTAVGLWRKFESKYQKKSLTNRLYQKRQLHTLKMSEGMQVRD 120
Query: 323 NIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNALK 144
++++ N+I+L+L VG K+ +E+ A+ILL SLP S+ + + YGR+ ++ DVK+AL+
Sbjct: 121 HLNNFNRIILDLNGVGVKVEEEDQAMILLCSLPSSYENFVDTMMYGRBSISXNDVKDALQ 180
Query: 143 SKDL 132
SK+L
Sbjct: 181 SKEL 184
>emb|CAN74741.1| hypothetical protein VITISV_025583 [Vitis vinifera]
Length = 253
Score = 150 bits (380), Expect = 9e-34
Identities = 79/208 (37%), Positives = 130/208 (62%), Gaps = 1/208 (0%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDAH 504
M K + ++F K+DF +WR KM+A LVQ A+ + + + E L AH
Sbjct: 1 MGTAKFDVEEFTSKNDFRLWRLKMRAFLVQQGLQDALLREKNLLSTMQEKHKIELLEKAH 60
Query: 503 SCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLSE 324
S + L L D +LRE+ + +A E+W KLE LY+ KSL N+++ K +L+ FKM S+ E
Sbjct: 61 SAIVLSLGDTLLREVAKAKSAAELWLKLESLYMTKSLGNRLHKKIKLYTFKMIPGMSIEE 120
Query: 323 NIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNALK 144
++D NKI+L+L+N+ + DE+ A++L SL S+ ++K AI Y RD++T +V++ L
Sbjct: 121 HLDHFNKIILDLENIDIVVLDEDKAIMLPTSLDASYTNMKEAIMYERDNMTFDEVQSILH 180
Query: 143 SKDLDLRKENK-SNGENLYVRGRVDRRE 63
+++L ++E+K +GE L +RGR ++RE
Sbjct: 181 ARELQKQEESKEKSGEGLNIRGRYEKRE 208
>gb|EOY34202.1| Uncharacterized protein TCM_041944 [Theobroma cacao]
Length = 698
Score = 144 bits (363), Expect = 9e-32
Identities = 70/186 (37%), Positives = 118/186 (63%)
Frame = -2
Query: 689 LTMSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGD 510
+ S K E +KF+G++DF +W KM A+LVQ A+ + + +
Sbjct: 1 MVTSSTKYEIEKFNGRNDFSLWCVKMCALLVQQGLLKALKEKEHLLSNLSNGEKDNLMEK 60
Query: 509 AHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSL 330
AHS + L L+D V+RE+ ++++A +W KL+ +Y+ KSL N++Y+K++L+ KMS S+
Sbjct: 61 AHSAILLALSDEVIREVTDEESAIAVWLKLKSIYMTKSLMNRLYIKQRLYTLKMSEGTSV 120
Query: 329 SENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNA 150
+ +ID+ N+++L+L+N+ KI DE++A+ILL SLP S+ + + YGRD T DV+ +
Sbjct: 121 NTHIDEFNRVILDLKNIDVKIEDEDLALILLCSLPPSYENFMDTMLYGRDTFTFEDVRAS 180
Query: 149 LKSKDL 132
L SK+L
Sbjct: 181 LNSKEL 186
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 141 bits (356), Expect = 6e-31
Identities = 79/203 (38%), Positives = 125/203 (61%), Gaps = 1/203 (0%)
Frame = -2
Query: 683 MSIQKTETDKFDG-KSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDA 507
MS K E KF+G K F MW+R+MK +L+Q A+ K PES K E E A
Sbjct: 1 MSGVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKA 60
Query: 506 HSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLS 327
S + LHLTD+V+ I ++++A IWTKLE LY+ K+L+NK+YLK+QL+ M +
Sbjct: 61 ASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFL 120
Query: 326 ENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNAL 147
+++ LN ++ +L N+G KI +E+ ++LLNSLP S++ + + I +G+D + L DV +AL
Sbjct: 121 SHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSAL 180
Query: 146 KSKDLDLRKENKSNGENLYVRGR 78
+ +RK+ +++G+ R
Sbjct: 181 LLNE-KMRKKPENHGQVFITESR 202
>ref|XP_003625577.1| Ubiquitin-protein ligase [Medicago truncatula]
gi|355500592|gb|AES81795.1| Ubiquitin-protein ligase
[Medicago truncatula]
Length = 1405
Score = 140 bits (352), Expect = 2e-30
Identities = 79/210 (37%), Positives = 129/210 (61%), Gaps = 7/210 (3%)
Frame = -2
Query: 671 KTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDAHSCLT 492
K + +KF G +DF +W+ KM+AVL+Q K A+ P + +E + A S +
Sbjct: 4 KWDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGSLPVTMSQAEKTEMVDKARSAVV 63
Query: 491 LHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLSENIDD 312
L L D VLRE+ ++ A IW KLE LY+ KSL+++ +LK+QL+ F+M SK++ E + +
Sbjct: 64 LCLGDKVLREVAKEATAASIWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKAIMEQLTE 123
Query: 311 LNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRD-DLTLADVKNALKSKD 135
NKI+ +L+N+ ++ DE+ A++LL +LP SF K + YG++ +TL +V+ AL++K+
Sbjct: 124 FNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKDTMLYGKEGTVTLEEVQAALRTKE 183
Query: 134 LDLRKE-NKSNGENLYVR-----GRVDRRE 63
L K+ +GE L V GR +RR+
Sbjct: 184 LTKSKDLTHEHGEGLSVTRGNGGGRGNRRK 213
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 139 bits (350), Expect = 3e-30
Identities = 73/202 (36%), Positives = 125/202 (61%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDAH 504
MS K E KF+G + F W+R+M+ +L+Q + K P++ K E ++ A
Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 503 SCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLSE 324
S + LHL+D+V+ I ++D A IWT+LE LY+ K+L+NK+YLK+QL+ MS +
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 323 NIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADVKNALK 144
+++ N ++ +L N+G KI +E+ A++LLNSLP S++++ + I +G+ + L DV +AL
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALL 180
Query: 143 SKDLDLRKENKSNGENLYVRGR 78
+ +RK+ ++ G+ L GR
Sbjct: 181 LNE-KMRKKPENQGQALITEGR 201
>ref|XP_003613324.1| Cc-nbs-lrr resistance protein [Medicago truncatula]
gi|355514659|gb|AES96282.1| Cc-nbs-lrr resistance
protein [Medicago truncatula]
Length = 1104
Score = 137 bits (346), Expect = 8e-30
Identities = 78/210 (37%), Positives = 128/210 (60%), Gaps = 7/210 (3%)
Frame = -2
Query: 671 KTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDAHSCLT 492
K + +KF G +DF +W+ KM+AVL+Q K A+ P + +E + A S +
Sbjct: 4 KWDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGSLPVTMSQAEKTEMVDKARSAVV 63
Query: 491 LHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLSENIDD 312
L L D VLRE+ ++ A IW KLE LY+ KSL+++ +LK+QL+ F+M SK++ E + +
Sbjct: 64 LCLGDKVLREVAKEATAASIWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKAIMEQLTE 123
Query: 311 LNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRD-DLTLADVKNALKSKD 135
NKI+ +L+N+ ++ DE+ A++LL +LP SF K + YG++ +TL +V+ AL++K+
Sbjct: 124 FNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKDTMLYGKEGTVTLEEVQAALRTKE 183
Query: 134 LDLRKE-NKSNGENLYVR-----GRVDRRE 63
L K+ G+ L V GR +RR+
Sbjct: 184 LTKSKDLTHEYGDGLSVTRGNGGGRGNRRK 213
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 137 bits (344), Expect = 1e-29
Identities = 79/226 (34%), Positives = 130/226 (57%), Gaps = 20/226 (8%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVL---------------VQNKTAPAICSPDKYPE 549
MS + E +KFDG+ D+ MW+ K+ A L V+ + ++ E
Sbjct: 1 MSAARIEVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEE 60
Query: 548 SWKGEVLSEKLGDAHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKE 369
+ E+L EK A S + L +TD VLR+I ++ +A + L+KLY+ K+L N+IY K+
Sbjct: 61 VLRRELLEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQ 120
Query: 368 QLFGFKMSGSKSLSENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKY 189
+L+ FKMS + S+ NID+ +I+ +L+N +SDE+ A++LL SLP F+ ++ +KY
Sbjct: 121 KLYSFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKY 180
Query: 188 --GRDDLTLADVKNALKSKDLDL---RKENKSNGENLYVRGRVDRR 66
GR L+L +V A+ SK+L+L +K K E L+V+ + + R
Sbjct: 181 GLGRVTLSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETR 226
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 136 bits (342), Expect = 2e-29
Identities = 77/201 (38%), Positives = 125/201 (62%), Gaps = 7/201 (3%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVLVQ-------NKTAPAICSPDKYPESWKGEVLS 525
MS + DKF G++ F +W+ KM+A+L Q +K A+ +P+ +L
Sbjct: 1 MSALNVKIDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAVVTPEM-------AILE 53
Query: 524 EKLGDAHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMS 345
EK AHS + L L D+V+ E+ +++ A +W KLE LY+ KSL+NK+ LK++LFG +M+
Sbjct: 54 EK---AHSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMA 110
Query: 344 GSKSLSENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLA 165
L E+++ LN ++LEL+N+ KI DE+ A+ILL SLP SF + + G+D ++L
Sbjct: 111 EGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLE 170
Query: 164 DVKNALKSKDLDLRKENKSNG 102
+V++AL S++L +K+NG
Sbjct: 171 EVRSALHSREL----RHKANG 187
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 135 bits (340), Expect = 4e-29
Identities = 82/226 (36%), Positives = 130/226 (57%), Gaps = 20/226 (8%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVL--------------VQNKTAPAICSPDKYPES 546
MS + E +KFDG+ D+ MW+ K+ A + K + S + Y E
Sbjct: 1 MSTARIEVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEK 60
Query: 545 W-KGEVLSEKLGDAHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKE 369
K E L EK A S + L +TD VLR+I ++ A + L+KLY+ K+L N+IY K+
Sbjct: 61 LEKFEALEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQ 120
Query: 368 QLFGFKMSGSKSLSENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKY 189
+L+ FKMS + S+ NID+ +I+ +L+N+ ISDE+ A++LL +LP +F+ +K +KY
Sbjct: 121 KLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKY 180
Query: 188 --GRDDLTLADVKNALKSKDLDL---RKENKSNGENLYVRGRVDRR 66
G+ LTL +V A+ SK+L+L +K K E LYV+ + + +
Sbjct: 181 SSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENK 226
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 135 bits (339), Expect = 5e-29
Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGD-- 510
MS+ + E +KF DF +W+ KMKA+LV A+ D E+ G + +K
Sbjct: 1 MSLPRHEIEKFTIGGDFSLWKLKMKALLVHQGLESALDEEDL--EASTGSGIDDKRRQIQ 58
Query: 509 --AHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSK 336
AHS L L L D++LREI E+ A IW K+E L + KSL+++++LK++L+ F M
Sbjct: 59 NRAHSTLILSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGV 118
Query: 335 SLSENIDDLNKIVLELQNV-GEKISDENVAVILLNSLPDSFNDVKSAIKYGRDDLTLADV 159
++ ++ID NKI+L+L+ V KI DE+ A LL+SLP S+ + YGR LTL DV
Sbjct: 119 TIQDHIDTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDV 178
Query: 158 KNALKSKDLDLRKE-NKSNGENLYVR 84
K +L SK++ E SNGE L R
Sbjct: 179 KASLSSKEIQKNCELETSNGEGLMAR 204
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 135 bits (339), Expect = 5e-29
Identities = 77/226 (34%), Positives = 136/226 (60%), Gaps = 19/226 (8%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVL--------------VQNKTAPAICSPDKYPES 546
M+ +E +K DG+ D+V+W+ K+ A + ++ + + A D
Sbjct: 1 MTSGHSEVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTA--ETDSLLTK 58
Query: 545 WKGEVLSEKLGDAHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQ 366
+ +VL EK G A S + L L ++VLR++ ++ A + L+KL++ KSL N+IYLK++
Sbjct: 59 TEDKVLKEKRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQR 118
Query: 365 LFGFKMSGSKSLSENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKYG 186
L+G+KMS S ++ EN++D K++ +L+NV + DE+ A++LL SLP F+ +K +KYG
Sbjct: 119 LYGYKMSDSMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYG 178
Query: 185 RDDLTLADVKNALKSKDLDL---RKENKSNGENLYV--RGRVDRRE 63
+ L L ++ A++SK L+L K K++ + L+V RGR ++R+
Sbjct: 179 KTTLALDEITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRD 224
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 134 bits (337), Expect = 9e-29
Identities = 78/231 (33%), Positives = 137/231 (59%), Gaps = 25/231 (10%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKA----------------VLVQNKTAPAICSPDKYP 552
MS + E +KFDG D+++W+ K+ A +V++ T ++ P
Sbjct: 1 MSSGRAEVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDP 60
Query: 551 ES----WKGEVLSEKLGDAHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNK 384
E+ + ++L EK G A S + L L +NVLR++ ++ A + L++L++ KSL N+
Sbjct: 61 ETATSKLEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNR 120
Query: 383 IYLKEQLFGFKMSGSKSLSENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVK 204
IYLK++L+G+KMS + ++ EN++D K++ +L+NV + DE+ A++LL SLP F+ +K
Sbjct: 121 IYLKQRLYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLK 180
Query: 203 SAIKYGRDDLTLADVKNALKSKDLDL---RKENKSNGENLYV--RGRVDRR 66
+KY + L L ++ +A++SK L+L K K+N + L+V RGR + R
Sbjct: 181 ETLKYCKTTLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETR 231
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 134 bits (336), Expect = 1e-28
Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 20/226 (8%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKM---------KAVLVQNKTAPAI------CSPDKYPE 549
MS + E +KFDG+ D+ MW+ K+ AVL +++T D+ E
Sbjct: 1 MSGARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEE 60
Query: 548 SWKGEVLSEKLGDAHSCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKE 369
K E EK A S + L ++D VLR+I ++ +A + L++LY+ K+L N+IYLK+
Sbjct: 61 REKMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQ 120
Query: 368 QLFGFKMSGSKSLSENIDDLNKIVLELQNVGEKISDENVAVILLNSLPDSFNDVKSAIKY 189
+L+ FKMS + S+ NID+ IV +L+N+ +SDE+ A++LL SLP F+ +K +KY
Sbjct: 121 KLYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKY 180
Query: 188 --GRDDLTLADVKNALKSKDLD---LRKENKSNGENLYVRGRVDRR 66
G+ L+L +V A+ S++L+ ++K K E LYV+ + + R
Sbjct: 181 SSGKTVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVKDKAENR 226
>ref|XP_004165166.1| PREDICTED: uncharacterized protein LOC101225243 [Cucumis sativus]
Length = 158
Score = 130 bits (328), Expect = 1e-27
Identities = 64/153 (41%), Positives = 98/153 (64%)
Frame = -2
Query: 683 MSIQKTETDKFDGKSDFVMWRRKMKAVLVQNKTAPAICSPDKYPESWKGEVLSEKLGDAH 504
M+I + E KFDGK DF +W+ K+KA+L Q K A+ P + P E A+
Sbjct: 1 MAIARVEIKKFDGKGDFALWKAKIKALLGQQKAHKALLDPLELPTILTATQKEEIKLIAY 60
Query: 503 SCLTLHLTDNVLREIDEKDNAFEIWTKLEKLYLGKSLSNKIYLKEQLFGFKMSGSKSLSE 324
L L+++DN++R++ E++ A ++W KLE LY K L NKI L+E++F +KM SK+L+E
Sbjct: 61 GTLILNISDNIIRQVLEEETAHKVWKKLESLYATKDLPNKICLREKIFTYKMDSSKTLTE 120
Query: 323 NIDDLNKIVLELQNVGEKISDENVAVILLNSLP 225
N+D+ KIV +++ +K+ DEN A +LLN LP
Sbjct: 121 NLDEFKKIVSNFKSLEDKLDDENEAFVLLNFLP 153