BLASTX nr result

ID: Bupleurum21_contig00038913 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038913
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518871.1| conserved hypothetical protein [Ricinus comm...    74   1e-11
ref|XP_003598902.1| hypothetical protein MTR_3g023170 [Medicago ...    57   1e-06
ref|XP_002533006.1| RNA binding protein, putative [Ricinus commu...    57   2e-06
ref|XP_003613921.1| hypothetical protein MTR_5g042640 [Medicago ...    55   6e-06
ref|XP_003605496.1| hypothetical protein MTR_4g032310 [Medicago ...    55   6e-06

>ref|XP_002518871.1| conserved hypothetical protein [Ricinus communis]
           gi|223541858|gb|EEF43404.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 668

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
 Frame = -2

Query: 379 CSWCLVKDEDATHVMFDCSFAHSVWNQVGIKEVTTMGFEGHIAEIIKQLAEKCSRDTFAL 200
           C WC  + E   HV+F CS A   W+ +G +   +   E  I   I+        DT A 
Sbjct: 469 CKWCNREPETLFHVLFGCSMARECWDLLGFR--FSFPTESPICSWIQNFFIDNHEDTCAK 526

Query: 199 VTMVCWNLWSRRNRWVWDKVSVLEFGIQSMVMNMLHE------WKQRCAENKSHRGDISG 38
           + +VC +LW++RN WVW+K S   +G+ S    +L +        +  A    H  D+  
Sbjct: 527 MALVCGSLWNQRNHWVWNKQSNTTYGVISPANQLLEQRTRAQSADEEIAPPLGHNTDV-- 584

Query: 37  GSRRWHNPQQGW 2
            +R+W  P+ GW
Sbjct: 585 -TRKWTKPELGW 595


>ref|XP_003598902.1| hypothetical protein MTR_3g023170 [Medicago truncatula]
           gi|355487950|gb|AES69153.1| hypothetical protein
           MTR_3g023170 [Medicago truncatula]
          Length = 274

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
 Frame = -2

Query: 370 CLVKDEDATHVMFDCSFAHSVWNQVGIKEVTTMGFEGHIAEIIKQLAEKCSR-DTFALVT 194
           C + DEDA H+ F+CS +   W QVG+          H  + ++     C+      L  
Sbjct: 21  CDICDEDAKHLFFECSKSVVCWQQVGL---------WHTIQQVRLPTSSCADIPQQQLFA 71

Query: 193 MVCWNLWSRRNRWVWDKVSVLEFGIQSMVMNMLHEWKQ-RCAENKSHRGDISGGSRRWHN 17
           ++ W+LW  RN  VW+ V+          MN L  WK  +   N++   +  G    W  
Sbjct: 72  VILWSLWKHRNNKVWNNVTETAQQTGERAMNFLSSWKNAQDVRNQNTNRNTHGVIDSWEK 131

Query: 16  PQQG 5
           P  G
Sbjct: 132 PSPG 135


>ref|XP_002533006.1| RNA binding protein, putative [Ricinus communis]
           gi|223527217|gb|EEF29381.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 197

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
 Frame = -2

Query: 379 CSWCLVKDEDATHVMFDCSFAHSVWNQVGIKEVTTMGFEGHIAEIIKQLAEKCSRDTFAL 200
           C  C    E   + + DCSF   VW  V    ++     G I + ++++  K  + T+  
Sbjct: 15  CPLCSKPGESIYYALIDCSFVKEVW--VISVLISRGNRNGSICDWLQEMFTKFEKSTWGC 72

Query: 199 VTMVCWNLWSRRNRWVWDKVSVLEFGIQSMVMNMLHEW---KQRCAENKSHRGDISGGSR 29
           + ++ WNLW  RN  VW         I    +  LH+W   +Q    +  + G       
Sbjct: 73  IAVLVWNLWIHRNEVVWYSKRKQPTQIVDGAVTYLHKWLIAQQTNPPSPDNSGLFHHNLA 132

Query: 28  RWHNPQQGW 2
           +W  P+ GW
Sbjct: 133 KWKKPKTGW 141


>ref|XP_003613921.1| hypothetical protein MTR_5g042640 [Medicago truncatula]
           gi|355515256|gb|AES96879.1| hypothetical protein
           MTR_5g042640 [Medicago truncatula]
          Length = 270

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = -2

Query: 385 TRCSWCLVKDEDATHVMFDCSFAHSVWNQVGI--KEVTTMGFEGHIAEIIKQLAEKCSRD 212
           T  + C    ED  HV FDC FA  VW++ G+       +       + I  L E  S +
Sbjct: 43  TNWASCASNHEDLMHVFFDCPFAIQVWHRTGLWGSVQHALSITASATKAIFFLLENLSVE 102

Query: 211 TFALVTMVCWNLWSRRNRWVWDKVSVLEFGIQSMVMNMLHEW 86
               ++ V W++W   N  VWD V+     +     NM+ +W
Sbjct: 103 LTQRLSSVIWSIWKHHNLRVWDDVTETSATVVERARNMVADW 144


>ref|XP_003605496.1| hypothetical protein MTR_4g032310 [Medicago truncatula]
           gi|355506551|gb|AES87693.1| hypothetical protein
           MTR_4g032310 [Medicago truncatula]
          Length = 283

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = -2

Query: 370 CLVKDEDATHVMFDCSFAHSVWNQVGI--KEVTTMGFEGHIAEIIKQLAEKCSRDTFALV 197
           C    EDA+HV+FDC  A  VW    +  K  + M      AE I  L ++ S D   L 
Sbjct: 2   CEESYEDASHVLFDCPRARKVWQDSLLLSKVNSVMWCNNTAAEFIFALLQELSHDQAELF 61

Query: 196 TMVCWNLWSRRNRWVWDKVSVLEFGIQSMVMNMLHEWK 83
             V W+LW  RN  +W  V      I      +L  W+
Sbjct: 62  ASVLWSLWKSRNLRLWQNVRETSQAILECAKQILANWR 99


Top