BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038899
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   214   8e-54
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc...   154   5e-36
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   150   1e-34
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   149   2e-34
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   148   4e-34

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  214 bits (544), Expect = 8e-54
 Identities = 97/130 (74%), Positives = 114/130 (87%)
 Frame = -2

Query: 392 GSTLSGFAAVASSETDKENMTKLWHMRLGHMSARGMQILSNANLLCGHKVTDLEFCEHCI 213
           GST++G A VASSE  +++MTKLWH+RLGHM  RGMQILS  +LL GHKV  LEFCEHC+
Sbjct: 391 GSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCV 450

Query: 212 FGKLHRSKFPKAIHRTKGTLDYIHSDCWGPSREESLGGHRFFVSMIDDFSSMTWVFILKH 33
           FGKLHR+KFPKAIHRTKGTLDYIHSDCWGP R ESLGG RFFVS+IDD+S MTWV+++KH
Sbjct: 451 FGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKH 510

Query: 32  KSEAFKTFRQ 3
           KSEAF+ F++
Sbjct: 511 KSEAFQKFKE 520


>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1131

 Score =  154 bits (390), Expect = 5e-36
 Identities = 68/130 (52%), Positives = 91/130 (70%)
 Frame = -2

Query: 392 GSTLSGFAAVASSETDKENMTKLWHMRLGHMSARGMQILSNANLLCGHKVTDLEFCEHCI 213
           GSTL G    A+   D+ + T LWHMRLGHMS  GM  L   NLL G+   +++FCEHC+
Sbjct: 356 GSTLHGSVTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGYTQGNMKFCEHCV 415

Query: 212 FGKLHRSKFPKAIHRTKGTLDYIHSDCWGPSREESLGGHRFFVSMIDDFSSMTWVFILKH 33
           FGK  R KF  ++HRTKG LDY+H+D WGPSR+ SLGG R+ +++IDD+S+  W + LKH
Sbjct: 416 FGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSTKVWPYFLKH 475

Query: 32  KSEAFKTFRQ 3
           K + F TF++
Sbjct: 476 KDDTFATFKE 485


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score =  150 bits (378), Expect = 1e-34
 Identities = 66/130 (50%), Positives = 88/130 (67%)
 Frame = -2

Query: 392 GSTLSGFAAVASSETDKENMTKLWHMRLGHMSARGMQILSNANLLCGHKVTDLEFCEHCI 213
           GSTL G+   A    D+ + T +WHMRLGHMS  GM  L   NLL G    +++FCEHC+
Sbjct: 301 GSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCV 360

Query: 212 FGKLHRSKFPKAIHRTKGTLDYIHSDCWGPSREESLGGHRFFVSMIDDFSSMTWVFILKH 33
           FGK  R KF  ++HRTKG LDY+H+D WGPSR+ SLGG R+ +++IDD+S   W + LKH
Sbjct: 361 FGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKH 420

Query: 32  KSEAFKTFRQ 3
           K + F  F++
Sbjct: 421 KDDTFAAFKE 430


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53370655|gb|AAU89150.1| integrase core domain
           containing protein [Oryza sativa Japonica Group]
           gi|108710286|gb|ABF98081.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1322

 Score =  149 bits (376), Expect = 2e-34
 Identities = 67/130 (51%), Positives = 88/130 (67%)
 Frame = -2

Query: 392 GSTLSGFAAVASSETDKENMTKLWHMRLGHMSARGMQILSNANLLCGHKVTDLEFCEHCI 213
           GSTL G    A+   D+ + T LWHMRLGHMS  GM  L   NLL G    +++FCEHC+
Sbjct: 406 GSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCV 465

Query: 212 FGKLHRSKFPKAIHRTKGTLDYIHSDCWGPSREESLGGHRFFVSMIDDFSSMTWVFILKH 33
           FGK  R KF  ++HRTKG LDY+H+D WGPSR+ SLGG R+ +++IDD+S   W + LKH
Sbjct: 466 FGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKH 525

Query: 32  KSEAFKTFRQ 3
           K + F  F++
Sbjct: 526 KDDTFAAFKE 535


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  148 bits (374), Expect = 4e-34
 Identities = 67/130 (51%), Positives = 87/130 (66%)
 Frame = -2

Query: 392 GSTLSGFAAVASSETDKENMTKLWHMRLGHMSARGMQILSNANLLCGHKVTDLEFCEHCI 213
           GSTL G    A+   D+ N T LWHMRLGHMS  GM  L   NLL G    +++FCE C+
Sbjct: 406 GSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCV 465

Query: 212 FGKLHRSKFPKAIHRTKGTLDYIHSDCWGPSREESLGGHRFFVSMIDDFSSMTWVFILKH 33
           FGK  R KF  ++HRTKG LDY+H+D WGPSR+ SLGG R+ +++IDD+S   W + LKH
Sbjct: 466 FGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKH 525

Query: 32  KSEAFKTFRQ 3
           K + F  F++
Sbjct: 526 KDDTFAAFKE 535