BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038887
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532897.1| ubiquitin-protein ligase, putative [Ricinus ...    88   6e-16
gb|AFW88140.1| hypothetical protein ZEAMMB73_905861 [Zea mays]         87   1e-15
ref|XP_002467679.1| hypothetical protein SORBIDRAFT_01g032170 [S...    87   1e-15
ref|XP_002873722.1| U-box domain-containing protein [Arabidopsis...    86   2e-15
ref|NP_568313.2| putative ubiquitin conjugation factor E4 [Arabi...    86   2e-15

>ref|XP_002532897.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527331|gb|EEF29477.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 1031

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 53/116 (45%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
 Frame = +2

Query: 2   PHLRVKMVEFLDPWMLNKDVLRSDEAFLLVKPTSVSKFLVRSLLKTLIDMEVLPNISHFK 181
           P+LR KMVE L+ WM  +    SD A L        ++LVR+LLK  +D+E   + + F 
Sbjct: 629 PYLRAKMVEVLNCWMPRRSG-SSDTATLFEGHHLSLEYLVRNLLKLYVDIEFTGSHTQFY 687

Query: 182 ---KYQRKIITLLIYLWKVDSHHDEWTQIANNEEKGLYLKFLKFLIEDTISLLDYS 340
                +  I  LL YLW+V SH + W QIA  EEKG+YL FL FLI D+I LLD S
Sbjct: 688 DKFNIRHNIAELLEYLWQVPSHRNAWRQIAREEEKGVYLNFLNFLINDSIYLLDES 743


>gb|AFW88140.1| hypothetical protein ZEAMMB73_905861 [Zea mays]
          Length = 1029

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
 Frame = +2

Query: 2   PHLRVKMVEFLDPWMLNKDVLRSDEAFLLVKPTSVSKFLVRSLLKTLIDMEVL-PNISHF 178
           P+LR KMVE L+ WM  +  L S  A L         +LVR+LLK  +D+E    +   F
Sbjct: 632 PYLRAKMVEVLNCWMPQRSGL-SSTASLFEGHQLCLDYLVRNLLKLYVDIEFTGSHTQFF 690

Query: 179 KKY--QRKIITLLIYLWKVDSHHDEWTQIANNEEKGLYLKFLKFLIEDTISLLDYS 340
            K+  +  I  LL YLW V SH + W QIA  EEKG+YL FL FLI D+I LLD S
Sbjct: 691 DKFNIRHNIAELLEYLWDVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDES 746


>ref|XP_002467679.1| hypothetical protein SORBIDRAFT_01g032170 [Sorghum bicolor]
           gi|241921533|gb|EER94677.1| hypothetical protein
           SORBIDRAFT_01g032170 [Sorghum bicolor]
          Length = 1030

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
 Frame = +2

Query: 2   PHLRVKMVEFLDPWMLNKDVLRSDEAFLLVKPTSVSKFLVRSLLKTLIDMEVL-PNISHF 178
           P+LR KMVE L+ WM  +  L S  A L         +LVR+LLK  +D+E    +   F
Sbjct: 633 PYLRAKMVEVLNCWMPQRSGLNST-ASLFEGHQLCLDYLVRNLLKLYVDIEFTGSHTQFF 691

Query: 179 KKY--QRKIITLLIYLWKVDSHHDEWTQIANNEEKGLYLKFLKFLIEDTISLLDYS 340
            K+  +  I  LL YLW V SH + W QIA  EEKG+YL FL FLI D+I LLD S
Sbjct: 692 DKFNIRHNIAELLEYLWDVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDES 747


>ref|XP_002873722.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319559|gb|EFH49981.1| U-box domain-containing
           protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1038

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
 Frame = +2

Query: 2   PHLRVKMVEFLDPWMLNKDVLRSDEAFLLVKPTSVSKFLVRSLLKTLIDMEVLPNISHFK 181
           P+LR KMVE L+ WM       S  + L        ++LVR+LLK  +D+E   + + F 
Sbjct: 636 PYLRAKMVEVLNCWMPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFY 695

Query: 182 ---KYQRKIITLLIYLWKVDSHHDEWTQIANNEEKGLYLKFLKFLIEDTISLLDYS 340
                +  I  LL YLW+V SH + W +IA +EEKG+YL FL FL+ D+I LLD S
Sbjct: 696 DKFNIRHNIAELLEYLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDES 751


>ref|NP_568313.2| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana]
           gi|75174048|sp|Q9LF41.1|UBE4_ARATH RecName:
           Full=Probable ubiquitin conjugation factor E4; AltName:
           Full=Plant U-box protein 1; AltName: Full=U-box
           domain-containing protein 1; AltName:
           Full=Ubiquitin-fusion degradation protein 2-like;
           Short=UB fusion protein 2-like
           gi|9755795|emb|CAC01739.1| ubiquitin-fusion degradation
           protein-like [Arabidopsis thaliana]
           gi|332004773|gb|AED92156.1| putative ubiquitin
           conjugation factor E4 [Arabidopsis thaliana]
          Length = 1038

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
 Frame = +2

Query: 2   PHLRVKMVEFLDPWMLNKDVLRSDEAFLLVKPTSVSKFLVRSLLKTLIDMEVLPNISHFK 181
           P+LR KMVE L+ WM       S  + L        ++LVR+LLK  +D+E   + + F 
Sbjct: 636 PYLRAKMVEVLNCWMPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFY 695

Query: 182 ---KYQRKIITLLIYLWKVDSHHDEWTQIANNEEKGLYLKFLKFLIEDTISLLDYS 340
                +  I  LL YLW+V SH + W +IA +EEKG+YL FL FL+ D+I LLD S
Sbjct: 696 DKFNIRHNIAELLEYLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDES 751