BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038865
         (636 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|2...    54   2e-14
ref|NP_188979.2| RNA recognition motif-containing protein [Arabi...    45   2e-09
ref|NP_001118682.1| RNA recognition motif-containing protein [Ar...    45   2e-09
gb|ABF59161.1| unknown protein [Arabidopsis thaliana]                  45   2e-09
ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis ly...    45   6e-09

>ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|222863522|gb|EEF00653.1|
           predicted protein [Populus trichocarpa]
          Length = 702

 Score = 54.3 bits (129), Expect(2) = 2e-14
 Identities = 27/56 (48%), Positives = 35/56 (62%)
 Frame = -3

Query: 634 RTTVVRIKSTSAVVVTNHMALFKKLGNVRACRPRHPNIFDVHFSITEWPNMLTILN 467
           RTTVVRI + +    +N + + K  G +   + RH NI DV+F I EWPNML ILN
Sbjct: 577 RTTVVRILNINPQCRSNVLTICKSFGKLWRMKLRHENIADVYFKIDEWPNMLNILN 632



 Score = 50.1 bits (118), Expect(2) = 2e-14
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = -1

Query: 387 LNGMEVDGSRFIAEPAPIVPPDMLLQLCSEPEERKRIKDSILKLCKRL 244
           LNG+E DGSR++A+PA I PP +L  L + P+ER+ +  S+  L K+L
Sbjct: 634 LNGLEADGSRWVAQPASIFPPIILQALWNHPDERRHVISSMQCLLKKL 681


>ref|NP_188979.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|11994322|dbj|BAB02281.1| unnamed protein product
           [Arabidopsis thaliana] gi|332643236|gb|AEE76757.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 45.1 bits (105), Expect(2) = 2e-09
 Identities = 24/56 (42%), Positives = 30/56 (53%)
 Frame = -3

Query: 634 RTTVVRIKSTSAVVVTNHMALFKKLGNVRACRPRHPNIFDVHFSITEWPNMLTILN 467
           RT V RI + S   + +  AL    G +R    R   + DV F I+EWPNML ILN
Sbjct: 688 RTIVARISNLSKSAMRDVRALCVPYGQIRGVYIRGTGVADVFFDISEWPNMLAILN 743



 Score = 42.4 bits (98), Expect(2) = 2e-09
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -1

Query: 387 LNGMEVDGSRFIAEPA-PIVPPDMLLQLCSEPEERKRIKDSILKLCKRL 244
           +NGME+DG + +  PA  ++PP++L  L  +P E++ +K  I  L + +
Sbjct: 745 MNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVKSVIQNLVREI 793


>ref|NP_001118682.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|332643237|gb|AEE76758.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 771

 Score = 45.1 bits (105), Expect(2) = 2e-09
 Identities = 24/56 (42%), Positives = 30/56 (53%)
 Frame = -3

Query: 634 RTTVVRIKSTSAVVVTNHMALFKKLGNVRACRPRHPNIFDVHFSITEWPNMLTILN 467
           RT V RI + S   + +  AL    G +R    R   + DV F I+EWPNML ILN
Sbjct: 648 RTIVARISNLSKSAMRDVRALCVPYGQIRGVYIRGTGVADVFFDISEWPNMLAILN 703



 Score = 42.4 bits (98), Expect(2) = 2e-09
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -1

Query: 387 LNGMEVDGSRFIAEPA-PIVPPDMLLQLCSEPEERKRIKDSILKLCKRL 244
           +NGME+DG + +  PA  ++PP++L  L  +P E++ +K  I  L + +
Sbjct: 705 MNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVKSVIQNLVREI 753


>gb|ABF59161.1| unknown protein [Arabidopsis thaliana]
          Length = 226

 Score = 45.1 bits (105), Expect(2) = 2e-09
 Identities = 24/56 (42%), Positives = 30/56 (53%)
 Frame = -3

Query: 634 RTTVVRIKSTSAVVVTNHMALFKKLGNVRACRPRHPNIFDVHFSITEWPNMLTILN 467
           RT V RI + S   + +  AL    G +R    R   + DV F I+EWPNML ILN
Sbjct: 103 RTIVARISNLSKSAMRDVRALCVPYGQIRGVYIRGTGVADVFFDISEWPNMLAILN 158



 Score = 42.4 bits (98), Expect(2) = 2e-09
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -1

Query: 387 LNGMEVDGSRFIAEPA-PIVPPDMLLQLCSEPEERKRIKDSILKLCKRL 244
           +NGME+DG + +  PA  ++PP++L  L  +P E++ +K  I  L + +
Sbjct: 160 MNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVKSVIQNLVREI 208


>ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329267|gb|EFH59686.1| nucleic acid binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 785

 Score = 44.7 bits (104), Expect(2) = 6e-09
 Identities = 23/56 (41%), Positives = 31/56 (55%)
 Frame = -3

Query: 634 RTTVVRIKSTSAVVVTNHMALFKKLGNVRACRPRHPNIFDVHFSITEWPNMLTILN 467
           RTTV RI + S   + +  AL    G ++    R   + DV F ++EWPNML ILN
Sbjct: 662 RTTVARISNLSKSAMKDVRALCVPYGQIKQVYIRGNGVVDVLFDVSEWPNMLNILN 717



 Score = 41.2 bits (95), Expect(2) = 6e-09
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -1

Query: 387 LNGMEVDGSRFIAEPA-PIVPPDMLLQLCSEPEERKRIKDSILKLCKRL 244
           LNGM +DG + +  PA  ++PP++L  L  +P+E++ +K  I  L + +
Sbjct: 719 LNGMGIDGKKLVVRPATTVIPPEILRVLWKDPQEKRYVKSVIQNLVREI 767