BLASTX nr result
ID: Bupleurum21_contig00038848
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00038848
(472 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containi... 143 1e-32
emb|CBI24516.3| unnamed protein product [Vitis vinifera] 143 1e-32
ref|XP_002518061.1| pentatricopeptide repeat-containing protein,... 131 5e-29
ref|NP_201043.1| pentatricopeptide repeat-containing protein [Ar... 111 5e-23
ref|XP_002866485.1| pentatricopeptide repeat-containing protein ... 109 2e-22
>ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein At5g62370-like
[Vitis vinifera]
Length = 1101
Score = 143 bits (361), Expect = 1e-32
Identities = 73/153 (47%), Positives = 96/153 (62%)
Frame = +1
Query: 13 EAHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLYTSLI 192
EA QLFDK++E+G +PS YT+++SG +KENM +KG YL ML DGF+PN +LYTSLI
Sbjct: 637 EARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTVLYTSLI 696
Query: 193 NYFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAVCSKSVFIGETWHTSNQKLRMGQ 372
N FL+KGE+ F FRL DLMDR+ I+ D+IT I +S V + W+ +
Sbjct: 697 NQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYHVKSGSARVR 756
Query: 373 EMLFQLLSQRAVVPGGKNCRLRFNSPRKLILFA 471
E+L LL Q V+P N SPRK+ FA
Sbjct: 757 EILLHLLHQSFVIPRENNLSFPRGSPRKIKYFA 789
Score = 59.7 bits (143), Expect = 2e-07
Identities = 30/98 (30%), Positives = 49/98 (50%)
Frame = +1
Query: 16 AHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLYTSLIN 195
A L K+ P+ +Y ++SGF + NM + ++ + M +G PN + +T LIN
Sbjct: 789 ALNLMQKIKGSSFMPNLYLYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILIN 848
Query: 196 YFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAVC 309
+ GEI LF+ M+ + PD ITY + +C
Sbjct: 849 GHTRFGEIDHAIGLFNKMNADGLAPDGITYNALIKGLC 886
Score = 58.5 bits (140), Expect = 5e-07
Identities = 33/138 (23%), Positives = 61/138 (44%)
Frame = +1
Query: 1 GKTREAHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLY 180
GKT A DK+V G +P Y SL+ +E + E +D M +G +P++ Y
Sbjct: 493 GKTDAALLFMDKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATY 552
Query: 181 TSLINYFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAVCSKSVFIGETWHTSNQKL 360
+++ G++ F L D M+ +KP + Y + + + S +K
Sbjct: 553 LIMVHEHCNHGDLASAFGLLDQMNERGLKPSVAIYDSIIGCL-------------SRRKR 599
Query: 361 RMGQEMLFQLLSQRAVVP 414
+ E +F+++ + V P
Sbjct: 600 ILEAENVFKMMLEAGVDP 617
>emb|CBI24516.3| unnamed protein product [Vitis vinifera]
Length = 970
Score = 143 bits (361), Expect = 1e-32
Identities = 73/153 (47%), Positives = 96/153 (62%)
Frame = +1
Query: 13 EAHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLYTSLI 192
EA QLFDK++E+G +PS YT+++SG +KENM +KG YL ML DGF+PN +LYTSLI
Sbjct: 517 EARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTVLYTSLI 576
Query: 193 NYFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAVCSKSVFIGETWHTSNQKLRMGQ 372
N FL+KGE+ F FRL DLMDR+ I+ D+IT I +S V + W+ +
Sbjct: 577 NQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYHVKSGSARVR 636
Query: 373 EMLFQLLSQRAVVPGGKNCRLRFNSPRKLILFA 471
E+L LL Q V+P N SPRK+ FA
Sbjct: 637 EILLHLLHQSFVIPRENNLSFPRGSPRKIKYFA 669
Score = 59.7 bits (143), Expect = 2e-07
Identities = 30/98 (30%), Positives = 49/98 (50%)
Frame = +1
Query: 16 AHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLYTSLIN 195
A L K+ P+ +Y ++SGF + NM + ++ + M +G PN + +T LIN
Sbjct: 669 ALNLMQKIKGSSFMPNLYLYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILIN 728
Query: 196 YFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAVC 309
+ GEI LF+ M+ + PD ITY + +C
Sbjct: 729 GHTRFGEIDHAIGLFNKMNADGLAPDGITYNALIKGLC 766
Score = 58.5 bits (140), Expect = 5e-07
Identities = 33/138 (23%), Positives = 61/138 (44%)
Frame = +1
Query: 1 GKTREAHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLY 180
GKT A DK+V G +P Y SL+ +E + E +D M +G +P++ Y
Sbjct: 373 GKTDAALLFMDKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATY 432
Query: 181 TSLINYFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAVCSKSVFIGETWHTSNQKL 360
+++ G++ F L D M+ +KP + Y + + + S +K
Sbjct: 433 LIMVHEHCNHGDLASAFGLLDQMNERGLKPSVAIYDSIIGCL-------------SRRKR 479
Query: 361 RMGQEMLFQLLSQRAVVP 414
+ E +F+++ + V P
Sbjct: 480 ILEAENVFKMMLEAGVDP 497
>ref|XP_002518061.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223542657|gb|EEF44194.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 403
Score = 131 bits (330), Expect = 5e-29
Identities = 69/157 (43%), Positives = 92/157 (58%)
Frame = +1
Query: 1 GKTREAHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLY 180
G+ EAHQLF+K+++Y PS YT+L+SG +K N EKG YLD+ML DGF+PN ++Y
Sbjct: 34 GRILEAHQLFEKMIQYAFPPSLDSYTALISGLVKNNEIEKGCVYLDRMLRDGFVPNAVIY 93
Query: 181 TSLINYFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAVCSKSVFIGETWHTSNQKL 360
SLI +FL+KG + F FRLFDLMDRS I+ DL+ YI + C + +
Sbjct: 94 ASLICHFLRKGHLEFAFRLFDLMDRSLIEIDLVMYIALVIGFCRNINGVKQKLCQVTGAS 153
Query: 361 RMGQEMLFQLLSQRAVVPGGKNCRLRFNSPRKLILFA 471
+E L QLL Q +P R NSP + FA
Sbjct: 154 ERMRERLLQLLCQGNFLPKKNILRFSANSPEAMKFFA 190
Score = 57.8 bits (138), Expect = 9e-07
Identities = 30/101 (29%), Positives = 49/101 (48%)
Frame = +1
Query: 16 AHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLYTSLIN 195
A +L K+ P+ +Y +++GF + + +KM +G PN + +T LI
Sbjct: 190 AFKLMYKIKGTRFMPNLYLYNGIIAGFCWADRIKDAYIQFEKMQSEGLCPNEVTFTILIG 249
Query: 196 YFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAVCSKS 318
+ GEI LF+LM+ + PD +TY T L +C S
Sbjct: 250 AHCRAGEIDHAIELFNLMNANAYSPDKVTYSTLLKGLCKAS 290
>ref|NP_201043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180621|sp|Q9LVA2.1|PP443_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g62370 gi|8809650|dbj|BAA97201.1| unnamed protein
product [Arabidopsis thaliana]
gi|332010218|gb|AED97601.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 982
Score = 111 bits (278), Expect = 5e-23
Identities = 54/102 (52%), Positives = 73/102 (71%)
Frame = +1
Query: 1 GKTREAHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLY 180
G+ EA++L +++V++ L+PS YT L+SGF+K M EKG YLDKML DG PN++LY
Sbjct: 631 GRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNVVLY 690
Query: 181 TSLINYFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAV 306
T+LI +FLKKG+ F F LF LM ++IK D I YIT LS +
Sbjct: 691 TALIGHFLKKGDFKFSFTLFGLMGENDIKHDHIAYITLLSGL 732
>ref|XP_002866485.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297312320|gb|EFH42744.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 983
Score = 109 bits (273), Expect = 2e-22
Identities = 54/102 (52%), Positives = 71/102 (69%)
Frame = +1
Query: 1 GKTREAHQLFDKLVEYGLKPSCQVYTSLVSGFIKENMTEKGSHYLDKMLGDGFLPNIMLY 180
G+ EA++L +++V++ ++PS YT L+SGF+K M EKG YLDKML DG PN +LY
Sbjct: 632 GRIDEANELVEEVVKHFVRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNAVLY 691
Query: 181 TSLINYFLKKGEITFGFRLFDLMDRSNIKPDLITYITFLSAV 306
TSLI +FLKKG+ F F LF LM + IK D I YIT LS +
Sbjct: 692 TSLIGHFLKKGDFKFSFTLFGLMGENGIKHDHIAYITLLSGL 733