BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038775
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16
ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containi...    88   8e-16
ref|XP_003613787.1| Pentatricopeptide repeat-containing protein ...    82   6e-14
ref|XP_002316137.1| predicted protein [Populus trichocarpa] gi|2...    78   9e-13
ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containi...    75   6e-12

>ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera] gi|296086362|emb|CBI31951.3| unnamed
           protein product [Vitis vinifera]
          Length = 595

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 45/90 (50%), Positives = 61/90 (67%)
 Frame = +3

Query: 24  AMSAPIPYHPLSYPNYNNKISSRKSNTQLHNPLALLPKCTSLNELKQIQAYSIKTHLQND 203
           A  AP P  P+  PN         SN+   +PL+LLPKCTSL ELKQ+QA++IKTHL +D
Sbjct: 2   ARPAP-PVTPMCPPN---------SNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSD 51

Query: 204 YFIIAKFIKFCTLSPNASTLAHAHQLFDQL 293
             ++ KFI FC+L+P  +++ HAH LFDQ+
Sbjct: 52  LSVLTKFINFCSLNPTTTSMQHAHHLFDQI 81


>ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
           gi|449478665|ref|XP_004155385.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 42/63 (66%), Positives = 51/63 (80%)
 Frame = +3

Query: 105 QLHNPLALLPKCTSLNELKQIQAYSIKTHLQNDYFIIAKFIKFCTLSPNASTLAHAHQLF 284
           QLH PL+LL KCTSLNELKQIQAY+IKT+LQ+D  ++ K I FCTL+P  S + HAH LF
Sbjct: 29  QLH-PLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLF 87

Query: 285 DQL 293
           DQ+
Sbjct: 88  DQI 90


>ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355515122|gb|AES96745.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 586

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 40/76 (52%), Positives = 55/76 (72%), Gaps = 6/76 (7%)
 Frame = +3

Query: 84  SSRKSNTQ------LHNPLALLPKCTSLNELKQIQAYSIKTHLQNDYFIIAKFIKFCTLS 245
           S  K NT+      L + ++L+PKCT+L ELKQIQAY+IKT+ QN+  +I KFI FCT +
Sbjct: 12  SLTKPNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSN 71

Query: 246 PNASTLAHAHQLFDQL 293
           P  +++ HAHQLFDQ+
Sbjct: 72  PTKASMEHAHQLFDQI 87


>ref|XP_002316137.1| predicted protein [Populus trichocarpa] gi|222865177|gb|EEF02308.1|
           predicted protein [Populus trichocarpa]
          Length = 601

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 38/70 (54%), Positives = 50/70 (71%)
 Frame = +3

Query: 84  SSRKSNTQLHNPLALLPKCTSLNELKQIQAYSIKTHLQNDYFIIAKFIKFCTLSPNASTL 263
           SS  + T   + L+ LPKCTSL ELKQIQA+SIKTHLQND  I+ K I  CT +P  +++
Sbjct: 18  SSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASM 77

Query: 264 AHAHQLFDQL 293
            +AHQLF+ +
Sbjct: 78  DYAHQLFEAI 87


>ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
 Frame = +3

Query: 57  SYPNYNNKISSRKSNTQLHNP-----LALLPKCTSLNELKQIQAYSIKTHLQNDYFIIAK 221
           S    N +    + NT    P     L+L+PKCTSL ELKQIQAY+IKTH QN+  ++ K
Sbjct: 13  SLTKLNTEAPRHEPNTAALEPPSSSILSLIPKCTSLRELKQIQAYTIKTH-QNNPTVLTK 71

Query: 222 FIKFCTLSPNASTLAHAHQLFDQL 293
            I FCT +P  +++ HAH++FD++
Sbjct: 72  LINFCTSNPTIASMDHAHRMFDKI 95