BLASTX nr result

ID: Bupleurum21_contig00038694 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038694
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281819.1| PREDICTED: uncharacterized protein LOC100242...    73   2e-11
ref|XP_002314751.1| predicted protein [Populus trichocarpa] gi|2...    63   3e-08
emb|CAN60832.1| hypothetical protein VITISV_004738 [Vitis vinifera]    56   3e-06

>ref|XP_002281819.1| PREDICTED: uncharacterized protein LOC100242197 [Vitis vinifera]
           gi|297737557|emb|CBI26758.3| unnamed protein product
           [Vitis vinifera]
          Length = 283

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 43/67 (64%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
 Frame = -2

Query: 312 LGWDQYHHNLGVFNTNMSHSCSN-TPPYLSSFDNSDYSTGYLEDALFEFS--SKRRRLLL 142
           LGWD   HNLGVFN +MS    N T P+ S  D SD STGYL+DAL EFS  SKRRRLLL
Sbjct: 21  LGWDL--HNLGVFNADMSLVMDNSTAPFFSCLD-SDPSTGYLQDALVEFSDRSKRRRLLL 77

Query: 141 FSDHQTN 121
           ++DH+TN
Sbjct: 78  YTDHETN 84


>ref|XP_002314751.1| predicted protein [Populus trichocarpa] gi|222863791|gb|EEF00922.1|
           predicted protein [Populus trichocarpa]
          Length = 277

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 46/90 (51%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
 Frame = -2

Query: 312 LGWDQYHHNLGVFNTNMSHSCSN-TPPYLSSFDNSDYSTGYLEDALFEFS--SKRRRLLL 142
           LGWD    NLGV N +MS +    T P+ SS + SD+STGYLEDAL EF+  SKRRRLLL
Sbjct: 15  LGWDL--QNLGVLNADMSLAMDRRTSPFFSSLE-SDFSTGYLEDALLEFNERSKRRRLLL 71

Query: 141 FS---DH---QTNYSTSCPIQNCSIYREDD 70
           FS   DH   Q   S   P  N +    DD
Sbjct: 72  FSTEHDHAHDQYEKSNDLPESNWNEENFDD 101


>emb|CAN60832.1| hypothetical protein VITISV_004738 [Vitis vinifera]
          Length = 441

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
 Frame = -2

Query: 294 HHNLGVFNTNMSHSC----SNTPPYLSSFDNSDYSTGYLEDALFEFS--SKRRRLLLFSD 133
           HH + +    +SH      ++T P+ S  D SD STGYL+DAL EFS  SKRRRLLL++D
Sbjct: 180 HHPMRLKPREISHKRIIMDNSTAPFFSCLD-SDPSTGYLQDALVEFSDRSKRRRLLLYTD 238

Query: 132 HQTN 121
           H+TN
Sbjct: 239 HETN 242


Top