BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038615
         (463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002892416.1| pentatricopeptide repeat-containing protein ...   162   3e-38
ref|NP_172253.1| pentatricopeptide repeat-containing protein [Ar...   160   8e-38
emb|CBI16200.3| unnamed protein product [Vitis vinifera]              159   2e-37
ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
ref|XP_002531100.1| pentatricopeptide repeat-containing protein,...   159   2e-37

>ref|XP_002892416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338258|gb|EFH68675.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 459

 Score =  162 bits (409), Expect = 3e-38
 Identities = 78/129 (60%), Positives = 99/129 (76%), Gaps = 3/129 (2%)
 Frame = -2

Query: 378 HSPTHKPARKP---IPFLRDIKQIRDPDEALSLFYDYHNNLGFKHLYPSYSSLIYKLAKA 208
           H PTHK  RKP   +PFL D+K+I DP+EALSLF+ Y   +GF+H YPSYSSLIYKLAK+
Sbjct: 36  HEPTHKFTRKPWEEVPFLTDLKEIEDPEEALSLFHQYQE-MGFRHDYPSYSSLIYKLAKS 94

Query: 207 RNFDAVQTILHYIKSCNIRCDETLFIALFKHLGKANLIDNAVELFKNMKGFNCVRTVQSF 28
           RNFDAV  IL  ++  N+RC E+LF+AL +H GKA  +D AV++F  +  F+CVRT+QS 
Sbjct: 95  RNFDAVDQILRLVRYRNVRCRESLFMALIQHYGKAGWVDKAVDVFHKLTSFDCVRTIQSL 154

Query: 27  NTLLNVLVD 1
           NTL+NVLVD
Sbjct: 155 NTLINVLVD 163


>ref|NP_172253.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180186|sp|Q9LQQ1.1|PPR20_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g07740, mitochondrial; Flags: Precursor
           gi|8439893|gb|AAF75079.1|AC007583_15 It contains PPR
           repeats PF|01535 [Arabidopsis thaliana]
           gi|14596021|gb|AAK68738.1| Unknown protein [Arabidopsis
           thaliana] gi|31376389|gb|AAP49521.1| At1g07730
           [Arabidopsis thaliana] gi|51970836|dbj|BAD44110.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332190050|gb|AEE28171.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  160 bits (406), Expect = 8e-38
 Identities = 77/131 (58%), Positives = 99/131 (75%), Gaps = 3/131 (2%)
 Frame = -2

Query: 384 SHHSPTHKPARKP---IPFLRDIKQIRDPDEALSLFYDYHNNLGFKHLYPSYSSLIYKLA 214
           S H PTHK  RKP   +PFL D+K+I DP+EALSLF+ Y   +GF+H YPSYSSLIYKLA
Sbjct: 34  SSHEPTHKFTRKPWEEVPFLTDLKEIEDPEEALSLFHQYQE-MGFRHDYPSYSSLIYKLA 92

Query: 213 KARNFDAVQTILHYIKSCNIRCDETLFIALFKHLGKANLIDNAVELFKNMKGFNCVRTVQ 34
           K+RNFDAV  IL  ++  N+RC E+LF+ L +H GKA  +D A+++F  +  F+CVRT+Q
Sbjct: 93  KSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQ 152

Query: 33  SFNTLLNVLVD 1
           S NTL+NVLVD
Sbjct: 153 SLNTLINVLVD 163


>emb|CBI16200.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score =  159 bits (403), Expect = 2e-37
 Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 11/160 (6%)
 Frame = -2

Query: 447 PRIYPIVIYYRLCAGNTYHS--------QSHHSPTHKPA---RKPIPFLRDIKQIRDPDE 301
           PR++   I Y+      YH+        +S   P H+     RK IPFL D+K ++DPD+
Sbjct: 410 PRLFRHFIEYK--PSQQYHTFRPRRPTTESRREPPHRSTSRLRKRIPFLADLKSVQDPDD 467

Query: 300 ALSLFYDYHNNLGFKHLYPSYSSLIYKLAKARNFDAVQTILHYIKSCNIRCDETLFIALF 121
           ALSLF  Y   +GFKH YPSYS+L+YKLA++RNF+AV+T+L Y+++ NIRC ETLFIAL 
Sbjct: 468 ALSLFNQYQQ-MGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALI 526

Query: 120 KHLGKANLIDNAVELFKNMKGFNCVRTVQSFNTLLNVLVD 1
           +H GK+ + + AVELF+ M  FNC RT+ SFNTLLNVLV+
Sbjct: 527 QHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVE 566


>ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Vitis vinifera]
          Length = 501

 Score =  159 bits (403), Expect = 2e-37
 Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 11/160 (6%)
 Frame = -2

Query: 447 PRIYPIVIYYRLCAGNTYHS--------QSHHSPTHKPA---RKPIPFLRDIKQIRDPDE 301
           PR++   I Y+      YH+        +S   P H+     RK IPFL D+K ++DPD+
Sbjct: 48  PRLFRHFIEYK--PSQQYHTFRPRRPTTESRREPPHRSTSRLRKRIPFLADLKSVQDPDD 105

Query: 300 ALSLFYDYHNNLGFKHLYPSYSSLIYKLAKARNFDAVQTILHYIKSCNIRCDETLFIALF 121
           ALSLF  Y   +GFKH YPSYS+L+YKLA++RNF+AV+T+L Y+++ NIRC ETLFIAL 
Sbjct: 106 ALSLFNQYQQ-MGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALI 164

Query: 120 KHLGKANLIDNAVELFKNMKGFNCVRTVQSFNTLLNVLVD 1
           +H GK+ + + AVELF+ M  FNC RT+ SFNTLLNVLV+
Sbjct: 165 QHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVE 204


>ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529296|gb|EEF31265.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 483

 Score =  159 bits (403), Expect = 2e-37
 Identities = 74/130 (56%), Positives = 101/130 (77%)
 Frame = -2

Query: 390 SQSHHSPTHKPARKPIPFLRDIKQIRDPDEALSLFYDYHNNLGFKHLYPSYSSLIYKLAK 211
           +Q H   T +  R+ IPF+ ++K++ DPD+ALSLF+DY  N GF+H YPSYS+L+YKLA+
Sbjct: 35  NQKHQHFTRRQ-RRDIPFVNNVKEVEDPDKALSLFHDYLQN-GFRHDYPSYSALVYKLAR 92

Query: 210 ARNFDAVQTILHYIKSCNIRCDETLFIALFKHLGKANLIDNAVELFKNMKGFNCVRTVQS 31
           +R F+AV+T+L Y++  N+RC +TLFIALF+H GK  L+  A+ LF  M GFNC+RT+QS
Sbjct: 93  SRRFEAVETVLGYLQDFNVRCRDTLFIALFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQS 152

Query: 30  FNTLLNVLVD 1
           FN LLNVLVD
Sbjct: 153 FNALLNVLVD 162