BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038607
         (399 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containi...   135   5e-30
ref|XP_002325952.1| predicted protein [Populus trichocarpa] gi|2...   123   2e-26
ref|XP_002525536.1| pentatricopeptide repeat-containing protein,...   120   2e-25
ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|XP_003637484.1| Pentatricopeptide repeat-containing protein ...   113   1e-23

>ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Vitis vinifera]
          Length = 582

 Score =  135 bits (339), Expect = 5e-30
 Identities = 64/129 (49%), Positives = 96/129 (74%)
 Frame = -3

Query: 388 GITPDALSFDILIQYSCKIGRMDIAHQFYDQIVHRGIEPRIQTHVAFVKSYFSAGNHDKA 209
           G  PDAL+F+I I Y+ ++G++D A +F DQ+V RG+EPR+ TH AF+K YF +  +++A
Sbjct: 434 GCPPDALTFEIFIYYTYRLGKLDFAIKFLDQMVSRGLEPRLTTHAAFIKGYFHSRRYEEA 493

Query: 208 LDYVRDLNNQHLQSSNMLYSLVAYLHLKKGHLIIAQRILIEMMDKGLKPNFLVFIKVVKR 29
            +YV D    +   SNM+YSL+A LH + G+LI AQ+ILIEM++KGLKPNF V+ +V++ 
Sbjct: 494 YEYVVDSGVTYKWPSNMIYSLLASLHQRNGNLISAQKILIEMIEKGLKPNFSVYKRVLEH 553

Query: 28  LEKSCKGNL 2
           L+KS + +L
Sbjct: 554 LDKSGREDL 562


>ref|XP_002325952.1| predicted protein [Populus trichocarpa] gi|222862827|gb|EEF00334.1|
           predicted protein [Populus trichocarpa]
          Length = 432

 Score =  123 bits (308), Expect = 2e-26
 Identities = 60/126 (47%), Positives = 89/126 (70%)
 Frame = -3

Query: 379 PDALSFDILIQYSCKIGRMDIAHQFYDQIVHRGIEPRIQTHVAFVKSYFSAGNHDKALDY 200
           PDAL+F+I I Y C  G+ +IA  ++D+IV RG+EPR+ TH AF+K +F++  +++A  Y
Sbjct: 292 PDALTFEIFIYYCCNNGKTEIACHYFDEIVARGLEPRLSTHAAFIKGFFNSEQYEEAYKY 351

Query: 199 VRDLNNQHLQSSNMLYSLVAYLHLKKGHLIIAQRILIEMMDKGLKPNFLVFIKVVKRLEK 20
           V D + ++  +S M YSL+A LH K+G+L+IAQ IL EM+ KGL+P F V++KV   L K
Sbjct: 352 VVDSDKKYKCTSCMNYSLLARLHQKRGNLVIAQNILSEMIKKGLRPYFKVYMKVFNCLNK 411

Query: 19  SCKGNL 2
           S +  L
Sbjct: 412 SGRETL 417


>ref|XP_002525536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535215|gb|EEF36894.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 430

 Score =  120 bits (300), Expect = 2e-25
 Identities = 60/121 (49%), Positives = 89/121 (73%)
 Frame = -3

Query: 379 PDALSFDILIQYSCKIGRMDIAHQFYDQIVHRGIEPRIQTHVAFVKSYFSAGNHDKALDY 200
           PDAL+F+I I  SC  G++D A +F+D +V RG+EPR+ TH AF+K +F++  ++KA  Y
Sbjct: 292 PDALTFEIFIYNSCNEGKLDNAFEFFDDMVARGLEPRLLTHAAFIKGFFNSQQYEKAYKY 351

Query: 199 VRDLNNQHLQSSNMLYSLVAYLHLKKGHLIIAQRILIEMMDKGLKPNFLVFIKVVKRLEK 20
           V   ++++  SSN+ YSL+A LH K+G+L+ A+ IL EM+ KGL+P+F VF+KV K L K
Sbjct: 352 VVGSDDKY--SSNVNYSLLANLHQKQGNLVDAENILSEMIKKGLRPHFNVFMKVKKHLMK 409

Query: 19  S 17
           S
Sbjct: 410 S 410


>ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
           gi|449498723|ref|XP_004160616.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 494

 Score =  119 bits (298), Expect = 3e-25
 Identities = 56/131 (42%), Positives = 94/131 (71%)
 Frame = -3

Query: 394 KQGITPDALSFDILIQYSCKIGRMDIAHQFYDQIVHRGIEPRIQTHVAFVKSYFSAGNHD 215
           +Q  +P++L+F+I+I + CKIG ++ A  + D +V  G+ PR+ TH AFVKSYFS+  ++
Sbjct: 344 EQNCSPNSLTFEIIICHLCKIGNIESALGYLDMMVAGGLMPRLSTHAAFVKSYFSSQRYE 403

Query: 214 KALDYVRDLNNQHLQSSNMLYSLVAYLHLKKGHLIIAQRILIEMMDKGLKPNFLVFIKVV 35
           +A  Y  D + +++ + N  YSL+A LH K+G+L+ AQ+IL E+MD GLKP+F V+ +++
Sbjct: 404 EAYQYAVDSSLKYVTTQNATYSLLATLHEKRGNLVDAQKILSELMDAGLKPHFHVYTRLL 463

Query: 34  KRLEKSCKGNL 2
           K+L+   +G+L
Sbjct: 464 KKLQVQGRGDL 474


>ref|XP_003637484.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355503419|gb|AES84622.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 327

 Score =  113 bits (283), Expect = 1e-23
 Identities = 56/122 (45%), Positives = 84/122 (68%)
 Frame = -3

Query: 367 SFDILIQYSCKIGRMDIAHQFYDQIVHRGIEPRIQTHVAFVKSYFSAGNHDKALDYVRDL 188
           +FD +I+  CK G++D+A +F D++  +G+EP   TH A +K YF  G +D+A +YV   
Sbjct: 192 TFDTIIRLLCKHGQIDLALKFIDKMTLKGVEPCSLTHAAVIKCYFELGKYDEAHEYVVVC 251

Query: 187 NNQHLQSSNMLYSLVAYLHLKKGHLIIAQRILIEMMDKGLKPNFLVFIKVVKRLEKSCKG 8
             ++  SSN  Y+L+A LH KKG ++++QRIL EMMDKGLKPN+ V++K+ K  EK  K 
Sbjct: 252 AGKNSYSSNENYTLLASLHFKKGSVLLSQRILHEMMDKGLKPNYSVYMKIRKYFEKKNKT 311

Query: 7   NL 2
           +L
Sbjct: 312 DL 313