BLASTX nr result
ID: Bupleurum21_contig00038512
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00038512
(308 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containi... 117 7e-25
ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containi... 113 2e-23
emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera] 112 4e-23
ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group] g... 88 8e-16
dbj|BAD10279.1| pentatricopeptide (PPR) repeat-containing protei... 88 8e-16
>ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 579
Score = 117 bits (294), Expect = 7e-25
Identities = 53/81 (65%), Positives = 64/81 (79%)
Frame = -3
Query: 246 SKYDVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFH 67
S DV N I LSR G ++AARKLFD+M T+D V+WNS+++AYWQNG LQ SK LFH
Sbjct: 25 STRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFH 84
Query: 66 SMPLRNVVSWNSIISGCIEND 4
SMPLRNVVSWNSII+ C++ND
Sbjct: 85 SMPLRNVVSWNSIIAACVQND 105
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQ-NGFLQESKNLFHSM 61
+ +S NA I+ L+R G ++ A++LF+ MP + VS+ +++ Y + G + ++ LF +M
Sbjct: 121 NAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAM 180
Query: 60 PLRNVVSWNSIISGCIEN 7
P RN VSW +I+G +EN
Sbjct: 181 PRRNSVSWVVMINGLVEN 198
>ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 113 bits (282), Expect = 2e-23
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = -3
Query: 249 FSKYDVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLF 70
FS DV + N +I L+R GNI AAR+LFD+MP RDTVSWNSIIT YW+NG ESK LF
Sbjct: 42 FSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLF 101
Query: 69 HSMPLRNVVSWNSIISGCIEND 4
MP +NVVSWNS+I+GCIE++
Sbjct: 102 GLMPTKNVVSWNSMIAGCIEDE 123
Score = 67.8 bits (164), Expect = 9e-10
Identities = 30/77 (38%), Positives = 53/77 (68%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSMP 58
+ +S NA I+ L R +E A +LF++MP R+ +S+ +++ Y + G +++++ LF+ MP
Sbjct: 139 NTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMP 198
Query: 57 LRNVVSWNSIISGCIEN 7
+NVVSW +ISG +EN
Sbjct: 199 QKNVVSWTVMISGYVEN 215
Score = 62.4 bits (150), Expect = 4e-08
Identities = 29/73 (39%), Positives = 47/73 (64%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSMP 58
+V S A + ++ G IE AR LF+ MP ++ VSW +I+ Y +NG E++NLF MP
Sbjct: 170 NVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMP 229
Query: 57 LRNVVSWNSIISG 19
+N+V+ ++I+G
Sbjct: 230 DKNIVAMTAMITG 242
Score = 59.3 bits (142), Expect = 3e-07
Identities = 27/83 (32%), Positives = 47/83 (56%)
Frame = -3
Query: 255 NCFSKYDVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKN 76
NC + +V S I+ G + A LF+ MP ++ V+ ++IT Y + G ++K
Sbjct: 195 NCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKI 254
Query: 75 LFHSMPLRNVVSWNSIISGCIEN 7
LF +P R++ SWN++I+G +N
Sbjct: 255 LFDQIPCRDLASWNAMITGYAQN 277
>emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 112 bits (279), Expect = 4e-23
Identities = 52/82 (63%), Positives = 64/82 (78%)
Frame = -3
Query: 249 FSKYDVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLF 70
FS DV + N +I L+R GNI AAR++FD+MP RDTVSWNSIIT YW+NG ESK LF
Sbjct: 42 FSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLF 101
Query: 69 HSMPLRNVVSWNSIISGCIEND 4
MP +NVVSWNS+I+GCIE++
Sbjct: 102 GLMPTKNVVSWNSMIAGCIEDE 123
Score = 67.8 bits (164), Expect = 9e-10
Identities = 30/77 (38%), Positives = 53/77 (68%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSMP 58
+ +S NA I+ L R +E A +LF++MP R+ +S+ +++ Y + G +++++ LF+ MP
Sbjct: 139 NTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMP 198
Query: 57 LRNVVSWNSIISGCIEN 7
+NVVSW +ISG +EN
Sbjct: 199 QKNVVSWTVMISGYVEN 215
Score = 62.4 bits (150), Expect = 4e-08
Identities = 29/73 (39%), Positives = 47/73 (64%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSMP 58
+V S A + ++ G IE AR LF+ MP ++ VSW +I+ Y +NG E++NLF MP
Sbjct: 170 NVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMP 229
Query: 57 LRNVVSWNSIISG 19
+N+V+ ++I+G
Sbjct: 230 DKNIVAMTAMITG 242
Score = 59.3 bits (142), Expect = 3e-07
Identities = 27/83 (32%), Positives = 47/83 (56%)
Frame = -3
Query: 255 NCFSKYDVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKN 76
NC + +V S I+ G + A LF+ MP ++ V+ ++IT Y + G ++K
Sbjct: 195 NCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKI 254
Query: 75 LFHSMPLRNVVSWNSIISGCIEN 7
LF +P R++ SWN++I+G +N
Sbjct: 255 LFDQIPCRDLASWNAMITGYAQN 277
>ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR)
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza
sativa Japonica Group] gi|215715342|dbj|BAG95093.1|
unnamed protein product [Oryza sativa Japonica Group]
gi|222640747|gb|EEE68879.1| hypothetical protein
OsJ_27695 [Oryza sativa Japonica Group]
Length = 563
Score = 87.8 bits (216), Expect = 8e-16
Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Frame = -3
Query: 222 NAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNG-FLQESKNLFHSMPLRNV 46
N +IT L+R G++ AAR++FD MP RD VSWN+++TA W+ G L +++LF MP RNV
Sbjct: 20 NQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNV 79
Query: 45 VSWNSIISGCIENDE 1
+SWNSII+GC+ + +
Sbjct: 80 ISWNSIIAGCLAHGD 94
Score = 69.7 bits (169), Expect = 2e-10
Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSMP 58
+V S + L+R G + +AR+LFD MPTR+ VSW ++I+ Y N L+E++ LF +MP
Sbjct: 140 NVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAMP 199
Query: 57 LRNVVSWNSIISG-CIEND 4
+NVV+ ++I+G C E D
Sbjct: 200 EKNVVACTAMITGYCKEGD 218
Score = 68.9 bits (167), Expect = 4e-10
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTG-NIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSM 61
D S NA +T L R G ++ AAR LFDDMP+R+ +SWNSII +G L + F
Sbjct: 46 DAVSWNALLTALWRAGRDLPAARSLFDDMPSRNVISWNSIIAGCLAHGDLAAASAYFARA 105
Query: 60 PLRNVVSWNSIISGCI 13
P RNV SWN++++G +
Sbjct: 106 PRRNVASWNAMLAGLV 121
Score = 68.6 bits (166), Expect = 5e-10
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSMP 58
+V+S NA + L R G++E AR LFD MP R+ VS+ +++ + G + ++ LF +MP
Sbjct: 109 NVASWNAMLAGLVRLGSMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMP 168
Query: 57 LRNVVSWNSIISGCIEND 4
RN+VSW ++ISG ++N+
Sbjct: 169 TRNLVSWAAMISGYVDNN 186
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Frame = -3
Query: 234 VSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSMPL 55
+S CNA +T S+ GN++ + +F + ++D VSWN+II AY Q+G Q+ LFH M L
Sbjct: 304 ISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMEL 363
Query: 54 ----RNVVSWNSIISGC 16
N +++ S++S C
Sbjct: 364 CGLIPNDITFLSMLSAC 380
>dbj|BAD10279.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 266
Score = 87.8 bits (216), Expect = 8e-16
Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Frame = -3
Query: 222 NAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNG-FLQESKNLFHSMPLRNV 46
N +IT L+R G++ AAR++FD MP RD VSWN+++TA W+ G L +++LF MP RNV
Sbjct: 20 NQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNV 79
Query: 45 VSWNSIISGCIENDE 1
+SWNSII+GC+ + +
Sbjct: 80 ISWNSIIAGCLAHGD 94
Score = 69.7 bits (169), Expect = 2e-10
Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSMP 58
+V S + L+R G + +AR+LFD MPTR+ VSW ++I+ Y N L+E++ LF +MP
Sbjct: 140 NVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAMP 199
Query: 57 LRNVVSWNSIISG-CIEND 4
+NVV+ ++I+G C E D
Sbjct: 200 EKNVVACTAMITGYCKEGD 218
Score = 68.9 bits (167), Expect = 4e-10
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTG-NIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSM 61
D S NA +T L R G ++ AAR LFDDMP+R+ +SWNSII +G L + F
Sbjct: 46 DAVSWNALLTALWRAGRDLPAARSLFDDMPSRNVISWNSIIAGCLAHGDLAAASAYFARA 105
Query: 60 PLRNVVSWNSIISGCI 13
P RNV SWN++++G +
Sbjct: 106 PRRNVASWNAMLAGLV 121
Score = 68.6 bits (166), Expect = 5e-10
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 237 DVSSCNAKITKLSRTGNIEAARKLFDDMPTRDTVSWNSIITAYWQNGFLQESKNLFHSMP 58
+V+S NA + L R G++E AR LFD MP R+ VS+ +++ + G + ++ LF +MP
Sbjct: 109 NVASWNAMLAGLVRLGSMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMP 168
Query: 57 LRNVVSWNSIISGCIEND 4
RN+VSW ++ISG ++N+
Sbjct: 169 TRNLVSWAAMISGYVDNN 186