BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038467
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|2...   209   1e-52
emb|CBI19832.3| unnamed protein product [Vitis vinifera]              207   7e-52
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi...   207   7e-52
ref|XP_002521664.1| pentatricopeptide repeat-containing protein,...   206   1e-51
ref|XP_003590744.1| Pentatricopeptide repeat-containing protein ...   196   2e-48

>ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|222843726|gb|EEE81273.1|
           predicted protein [Populus trichocarpa]
          Length = 797

 Score =  209 bits (533), Expect = 1e-52
 Identities = 103/145 (71%), Positives = 118/145 (81%)
 Frame = +3

Query: 3   LTRTVHAHMITSGFNPRSHILNRLIDIYCKSSNLVYAHLLFDEIPQPDIVARTTLINAHS 182
           L R VHAHMI SGF PR HILNRLIDIY KSS L YA  LFDEIPQPDIVARTTLI A+S
Sbjct: 31  LARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYS 90

Query: 183 NAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKPDNFTF 362
            AG+ KL+R+IF DTPL MRDSV YNAMIT Y+HN DG+AAI +F +M+  N +PDN+TF
Sbjct: 91  AAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTF 150

Query: 363 TGILSALALIADREMHCQQLHCDVV 437
           T +L ALAL+A++E HCQQLHC VV
Sbjct: 151 TSVLGALALVAEKEKHCQQLHCAVV 175



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
 Frame = +3

Query: 15  VHAHMITSGFNPRSHILNRLIDIYCK---------SSNLVYAHLLFDEIPQPDIVARTTL 167
           +H  ++ SG    + +LN LI  Y K         SS +  A  LFDE+P  D ++ TT+
Sbjct: 170 LHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTI 229

Query: 168 INAHSNAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKP 347
           I  +    +   A++  + T   +   V +NAMI+GYAH      A  +FR+M  S I+ 
Sbjct: 230 ITGYVKNNDLDAAKEFLNGTSKKL--GVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQL 287

Query: 348 DNFTFTGILSALA 386
           D FTFT ++S  A
Sbjct: 288 DEFTFTSVISVCA 300


>emb|CBI19832.3| unnamed protein product [Vitis vinifera]
          Length = 544

 Score =  207 bits (527), Expect = 7e-52
 Identities = 100/145 (68%), Positives = 118/145 (81%)
 Frame = +3

Query: 3   LTRTVHAHMITSGFNPRSHILNRLIDIYCKSSNLVYAHLLFDEIPQPDIVARTTLINAHS 182
           + RTVHAHMI SGF PR +ILNRLID+YCKSS+LV AH LFDEI QPDIVARTTLI AHS
Sbjct: 31  IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHS 90

Query: 183 NAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKPDNFTF 362
           +AGN  LAR+IF  TPL +RD+VCYNAMITGY+HN+DG  AI +FR++  +  +PDNFTF
Sbjct: 91  SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 150

Query: 363 TGILSALALIADREMHCQQLHCDVV 437
           T +L ALALI + E  CQQ+HC VV
Sbjct: 151 TSVLGALALIVEDEKQCQQIHCAVV 175



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
 Frame = +3

Query: 15  VHAHMITSGFNPRSHILNRLIDIYCK---------SSNLVYAHLLFDEIPQPDIVARTTL 167
           +H  ++ SG    + +LN L+ ++ K         SS +  A  LFDE+ + D ++ TT+
Sbjct: 170 IHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTM 229

Query: 168 INAHSNAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKP 347
           I  +   G    ARQ  D   +  +  V +NAMI+GY H+     A+ +FR+M    I+ 
Sbjct: 230 IAGYVRNGELDAARQFLDG--MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQW 287

Query: 348 DNFTFTGILSALALIADREMHCQQLHCDVV 437
           D FT+T +LSA A  A   +H +Q+H  ++
Sbjct: 288 DEFTYTSVLSACA-NAGFFLHGKQVHAYIL 316


>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  207 bits (527), Expect = 7e-52
 Identities = 100/145 (68%), Positives = 118/145 (81%)
 Frame = +3

Query: 3   LTRTVHAHMITSGFNPRSHILNRLIDIYCKSSNLVYAHLLFDEIPQPDIVARTTLINAHS 182
           + RTVHAHMI SGF PR +ILNRLID+YCKSS+LV AH LFDEI QPDIVARTTLI AHS
Sbjct: 33  IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHS 92

Query: 183 NAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKPDNFTF 362
           +AGN  LAR+IF  TPL +RD+VCYNAMITGY+HN+DG  AI +FR++  +  +PDNFTF
Sbjct: 93  SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 152

Query: 363 TGILSALALIADREMHCQQLHCDVV 437
           T +L ALALI + E  CQQ+HC VV
Sbjct: 153 TSVLGALALIVEDEKQCQQIHCAVV 177



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
 Frame = +3

Query: 15  VHAHMITSGFNPRSHILNRLIDIYCK---------SSNLVYAHLLFDEIPQPDIVARTTL 167
           +H  ++ SG    + +LN L+ ++ K         SS +  A  LFDE+ + D ++ TT+
Sbjct: 172 IHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTM 231

Query: 168 INAHSNAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKP 347
           I  +   G    ARQ  D   +  +  V +NAMI+GY H+     A+ +FR+M    I+ 
Sbjct: 232 IAGYVRNGELDAARQFLDG--MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQW 289

Query: 348 DNFTFTGILSALALIADREMHCQQLHCDVV 437
           D FT+T +LSA A  A   +H +Q+H  ++
Sbjct: 290 DEFTYTSVLSACA-NAGFFLHGKQVHAYIL 318



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
 Frame = +3

Query: 9   RTVHAHMITSGFNPRSH----ILNRLIDIYCKSSNLVYAHLLFDEIPQPDIVARTTLINA 176
           + VHA+++ +   P       + N L  +Y K   +  A  +F+++P  D+V+   +++ 
Sbjct: 311 KQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSG 370

Query: 177 HSNAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKPDNF 356
           + NAG    A+  F++ P   R+ + +  MI+G A N  G  ++ +F  MK    +P ++
Sbjct: 371 YVNAGRIDEAKSFFEEMP--ERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDY 428

Query: 357 TFTGILSALALIADREMHCQQLHCDVV 437
            F G + A A +A   MH +QLH  +V
Sbjct: 429 AFAGAIIACAWLA-ALMHGRQLHAQLV 454


>ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539055|gb|EEF40651.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 574

 Score =  206 bits (525), Expect = 1e-51
 Identities = 98/143 (68%), Positives = 117/143 (81%)
 Frame = +3

Query: 9   RTVHAHMITSGFNPRSHILNRLIDIYCKSSNLVYAHLLFDEIPQPDIVARTTLINAHSNA 188
           RT+HAHMI SGF P  H LNRLI IYCKSS L YA  LFDEIPQPDIVARTTLINA+S  
Sbjct: 37  RTIHAHMIASGFKPHGHTLNRLIYIYCKSSKLSYARSLFDEIPQPDIVARTTLINAYSAT 96

Query: 189 GNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKPDNFTFTG 368
           G+ KLA+++F +TPL MRD+V YNAMIT Y+HN+DG+AAI +F +MK ++ +PDNFTFT 
Sbjct: 97  GHLKLAKEMFYETPLIMRDAVIYNAMITAYSHNNDGHAAIELFCDMKRNDFRPDNFTFTS 156

Query: 369 ILSALALIADREMHCQQLHCDVV 437
           +L ALAL+A+ E HCQQLHC VV
Sbjct: 157 VLGALALVAENERHCQQLHCTVV 179



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 11/152 (7%)
 Frame = +3

Query: 15  VHAHMITSGFNPRSHILNRLIDIYCK---------SSNLVYAHLLFDEIPQPDIVARTTL 167
           +H  ++ SG    + +LN LI +Y K         SS +  A  LFDE+P  D ++ TT+
Sbjct: 174 LHCTVVKSGTWFVTSVLNALISVYVKCASSPSVISSSLMGAARRLFDEMPVRDELSWTTI 233

Query: 168 INAHSNAGNPKLARQIFDDTPLFMRDS--VCYNAMITGYAHNSDGNAAIGIFREMKWSNI 341
           I  +    +   AR++FD     MR+   V +NAMI+GY H      A+ +FR+M  + +
Sbjct: 234 ITGYVKNDDLDAAREVFDG----MREKLVVVWNAMISGYMHRGLYQEALEMFRKMYLAGL 289

Query: 342 KPDNFTFTGILSALALIADREMHCQQLHCDVV 437
           K D FT+T I+SA A  A    H +Q+H  ++
Sbjct: 290 KLDEFTYTSIISACA-NAGFLQHGKQVHAYIL 320



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/147 (25%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
 Frame = +3

Query: 9   RTVHAHMITSGFNPRSH----ILNRLIDIYCKSSNLVYAHLLFDEIPQPDIVARTTLINA 176
           + VHA+++ +   P       + N L+ +Y K   +  A  +F+ +P  D+V+  T+++ 
Sbjct: 313 KQVHAYILKTEAMPSPDFSLPVNNALVTLYWKCGKVDEAQEVFNNMPVRDLVSWNTILSG 372

Query: 177 HSNAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKPDNF 356
           + NAG    A+  F++ P   ++ + +  MI+G A N  G   + +F +MK    +P ++
Sbjct: 373 YLNAGRMDEAKTFFEEMP--EKNILSWVVMISGLAQNGFGEEGLKLFNQMKLRGFEPCDY 430

Query: 357 TFTGILSALALIADREMHCQQLHCDVV 437
            F G +++ +++   E H +QLH  +V
Sbjct: 431 AFAGAITSCSMLGLLE-HGRQLHAQLV 456


>ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355479792|gb|AES60995.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  196 bits (498), Expect = 2e-48
 Identities = 90/145 (62%), Positives = 119/145 (82%)
 Frame = +3

Query: 3   LTRTVHAHMITSGFNPRSHILNRLIDIYCKSSNLVYAHLLFDEIPQPDIVARTTLINAHS 182
           + R VHAH++TSGF P + ILNRLI+IYCKSSN+ YA  LFD+IP+PDIVARTTL++A+S
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 183 NAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKPDNFTF 362
           ++GN KLA+Q+F+ TPL +RD+V YNAMIT Y+H +DG+AA+ +F +MK     PD FTF
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 363 TGILSALALIADREMHCQQLHCDVV 437
           + +LSAL+LIAD E HCQ LHC+V+
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVI 167



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 40/147 (27%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
 Frame = +3

Query: 9   RTVHAHMITSGFNPRSHIL----NRLIDIYCKSSNLVYAHLLFDEIPQPDIVARTTLINA 176
           R VH +++ +   P  H +    N LI  Y K   ++ A  +FD++P  DI++   +++ 
Sbjct: 307 RQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSG 366

Query: 177 HSNAGNPKLARQIFDDTPLFMRDSVCYNAMITGYAHNSDGNAAIGIFREMKWSNIKPDNF 356
           + NA   + A  IF + P   R+ + +  MI+G A N  G   + +F +MK   ++P ++
Sbjct: 367 YVNAQRIEEANSIFSEMP--ERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDY 424

Query: 357 TFTGILSALALIADREMHCQQLHCDVV 437
            F G ++A +++   + + QQ+H  V+
Sbjct: 425 AFAGAITACSVLGSLD-NGQQIHSQVI 450