BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038344
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
ref|XP_002522400.1| pentatricopeptide repeat-containing protein,...   126   2e-27
ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_002890625.1| pentatricopeptide repeat-containing protein ...   113   2e-23
ref|NP_174012.1| pentatricopeptide repeat-containing protein [Ar...   110   9e-23

>ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Vitis vinifera]
          Length = 597

 Score =  139 bits (351), Expect = 2e-31
 Identities = 68/146 (46%), Positives = 92/146 (63%)
 Frame = -1

Query: 439 LFRRLLLDGVRISDTTMLCVLSFIDGYGGVLGGECVHCYCIKNGFCTDSNVVTVLVAMYG 260
           LF  +   G++ S TT+  VL  +   G +LGG  +H +CIK GFC+D NV T L+ MY 
Sbjct: 216 LFGEMCRKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIKVGFCSDLNVATALIDMYA 275

Query: 259 RIGKMDLGRRAFDEVDMKDVVLWNCLMDGYAKNGXXXXXXXXXXXXXLRSVRPNSSTLAG 80
             G +DLG + F +V  KDVVLWNCL+DGYAK+                 V+PNSSTL G
Sbjct: 276 NAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKPNSSTLVG 335

Query: 79  LLSSCATSGALAVGQCIHDYVKQQQL 2
           LLS+CA +GA +VG CI +YV+++Q+
Sbjct: 336 LLSACAAAGASSVGLCISNYVEEEQI 361



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/134 (23%), Positives = 61/134 (45%)
 Frame = -1

Query: 439 LFRRLLLDGVRISDTTMLCVLSFIDGYGGVLGGECVHCYCIKNGFCTDSNVVTVLVAMYG 260
           L + +  + V+ + +T++ +LS     G    G C+  Y  +     D+ + T LV MY 
Sbjct: 317 LLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYC 376

Query: 259 RIGKMDLGRRAFDEVDMKDVVLWNCLMDGYAKNGXXXXXXXXXXXXXLRSVRPNSSTLAG 80
           + G ++     F+ +++KDV  W  ++ GY  +G             +   RPN  T   
Sbjct: 377 KCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLA 436

Query: 79  LLSSCATSGALAVG 38
           +L++C+  G +  G
Sbjct: 437 VLNACSHGGMVVEG 450


>ref|XP_002522400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538285|gb|EEF39892.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 476

 Score =  126 bits (316), Expect = 2e-27
 Identities = 64/147 (43%), Positives = 91/147 (61%)
 Frame = -1

Query: 442 DLFRRLLLDGVRISDTTMLCVLSFIDGYGGVLGGECVHCYCIKNGFCTDSNVVTVLVAMY 263
           +++ ++   G  +S  T L VLS     G   GGE +H  CIK GFC++ NVVT L+ MY
Sbjct: 215 EVYGQMFRYGFIMSVATSLSVLSAFADLGDPTGGETIHACCIKIGFCSNLNVVTALIEMY 274

Query: 262 GRIGKMDLGRRAFDEVDMKDVVLWNCLMDGYAKNGXXXXXXXXXXXXXLRSVRPNSSTLA 83
            + G++D GRR FD +  KDV+LWNC++D YAK G             L  VR NSS+LA
Sbjct: 275 AKTGRIDSGRRIFDGIVEKDVILWNCMIDKYAKVGLLEQAIALLQLMKLEGVRANSSSLA 334

Query: 82  GLLSSCATSGALAVGQCIHDYVKQQQL 2
           GLL++CA SG++ +G  + DYV+ ++L
Sbjct: 335 GLLAACAASGSIKLGWRLSDYVEAEEL 361



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 33/129 (25%), Positives = 59/129 (45%)
 Frame = -1

Query: 439 LFRRLLLDGVRISDTTMLCVLSFIDGYGGVLGGECVHCYCIKNGFCTDSNVVTVLVAMYG 260
           L + + L+GVR + +++  +L+     G +  G  +  Y        D+ + T LV M+G
Sbjct: 317 LLQLMKLEGVRANSSSLAGLLAACAASGSIKLGWRLSDYVEAEELEVDAVLGTALVDMFG 376

Query: 259 RIGKMDLGRRAFDEVDMKDVVLWNCLMDGYAKNGXXXXXXXXXXXXXLRSVRPNSSTLAG 80
           + G +D   + F+ ++ KDV  W  ++ GY  +G                  PN  T  G
Sbjct: 377 KCGFLDKAIQVFERMESKDVKSWTAMILGYGVHGQARNAVALFYRMEKEGFIPNEVTFLG 436

Query: 79  LLSSCATSG 53
           +LS+C+  G
Sbjct: 437 VLSACSHGG 445


>ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  116 bits (291), Expect = 2e-24
 Identities = 59/147 (40%), Positives = 88/147 (59%)
 Frame = -1

Query: 442 DLFRRLLLDGVRISDTTMLCVLSFIDGYGGVLGGECVHCYCIKNGFCTDSNVVTVLVAMY 263
           D FR++   G+  +  T+L V S +   G  + G  ++ +CIK G  ++  VVT L+ MY
Sbjct: 212 DTFRQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKLGLGSNLRVVTCLIDMY 271

Query: 262 GRIGKMDLGRRAFDEVDMKDVVLWNCLMDGYAKNGXXXXXXXXXXXXXLRSVRPNSSTLA 83
           G+ G +D     F+EV  KDV++WNCL+D YAKNG             L  ++PNSSTLA
Sbjct: 272 GKFGDLDEAGTIFNEVAEKDVIVWNCLIDNYAKNGLIKKAVASLHLMKLEGMKPNSSTLA 331

Query: 82  GLLSSCATSGALAVGQCIHDYVKQQQL 2
           GL+S+CATSGA++ G+ + +Y   + L
Sbjct: 332 GLISACATSGAVSTGKYLANYADNEGL 358



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/128 (25%), Positives = 57/128 (44%)
 Frame = -1

Query: 421 LDGVRISDTTMLCVLSFIDGYGGVLGGECVHCYCIKNGFCTDSNVVTVLVAMYGRIGKMD 242
           L+G++ + +T+  ++S     G V  G+ +  Y    G   D  + T L+ MY + G +D
Sbjct: 320 LEGMKPNSSTLAGLISACATSGAVSTGKYLANYADNEGLDLDVVLGTTLIGMYAKFGFLD 379

Query: 241 LGRRAFDEVDMKDVVLWNCLMDGYAKNGXXXXXXXXXXXXXLRSVRPNSSTLAGLLSSCA 62
                FD++  KDV  W  ++ GY  +G                 RPN  T   +L++ +
Sbjct: 380 KAIDIFDKMKNKDVKTWTAMITGYGDHGQTRKVMETLYRMEEEGFRPNEITFLAVLNAYS 439

Query: 61  TSGALAVG 38
             G +A G
Sbjct: 440 HGGIVAEG 447


>ref|XP_002890625.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336467|gb|EFH66884.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 568

 Score =  113 bits (282), Expect = 2e-23
 Identities = 60/147 (40%), Positives = 83/147 (56%)
 Frame = -1

Query: 442 DLFRRLLLDGVRISDTTMLCVLSFIDGYGGVLGGECVHCYCIKNGFCTDSNVVTVLVAMY 263
           DLFR +    V ++ +T+L  LS     G + G E  H  CIK GF  D +++T L+ MY
Sbjct: 209 DLFRIMRNSEVPVNVSTLLSFLSATGDLGNLSGAESAHGLCIKIGFNLDLHLITALIGMY 268

Query: 262 GRIGKMDLGRRAFDEVDMKDVVLWNCLMDGYAKNGXXXXXXXXXXXXXLRSVRPNSSTLA 83
           G+IG +   RR FD    KDVV WNC++D YAK G                ++PNSST  
Sbjct: 269 GKIGDIGSARRIFDCAIRKDVVTWNCMIDQYAKMGILEECVWLLRQMKYERMKPNSSTFV 328

Query: 82  GLLSSCATSGALAVGQCIHDYVKQQQL 2
           GLLSSCA S A  VG+ + D V+++++
Sbjct: 329 GLLSSCANSEAAFVGRSVADLVEEERI 355


>ref|NP_174012.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216976|sp|Q9ZVG8.1|PPR60_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g26900, mitochondrial; Flags: Precursor
           gi|4262179|gb|AAD14496.1| Hypothetical protein
           [Arabidopsis thaliana] gi|332192635|gb|AEE30756.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 572

 Score =  110 bits (276), Expect = 9e-23
 Identities = 58/147 (39%), Positives = 82/147 (55%)
 Frame = -1

Query: 442 DLFRRLLLDGVRISDTTMLCVLSFIDGYGGVLGGECVHCYCIKNGFCTDSNVVTVLVAMY 263
           DLFR +    V ++ +T+L  LS I   G + G E  H  CIK G   D +++T L+ MY
Sbjct: 213 DLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMY 272

Query: 262 GRIGKMDLGRRAFDEVDMKDVVLWNCLMDGYAKNGXXXXXXXXXXXXXLRSVRPNSSTLA 83
           G+ G +   RR FD    KDVV WNC++D YAK G                ++PNSST  
Sbjct: 273 GKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFV 332

Query: 82  GLLSSCATSGALAVGQCIHDYVKQQQL 2
           GLLSSCA S A  VG+ + D ++++++
Sbjct: 333 GLLSSCAYSEAAFVGRTVADLLEEERI 359