BLASTX nr result
ID: Bupleurum21_contig00038336
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00038336
(357 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containi... 162 2e-38
emb|CBI30210.3| unnamed protein product [Vitis vinifera] 162 2e-38
emb|CAN82063.1| hypothetical protein VITISV_016431 [Vitis vinifera] 160 1e-37
ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|2... 156 1e-36
ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containi... 152 4e-35
>ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Vitis vinifera]
Length = 882
Score = 162 bits (411), Expect = 2e-38
Identities = 77/117 (65%), Positives = 96/117 (82%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
GIE NEFSFV IL+ C+RL L LG Q+HA+V+K+G+L+ +VSNAL+GLY KCG LD V
Sbjct: 166 GIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSV 225
Query: 177 LSLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDGFKVDHFTLSTLLVA 7
L LF E+P RDIA+WNTV+SS+VK+ MYE+ ELFR M IDGF++DHFTLST+LVA
Sbjct: 226 LQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVA 282
Score = 62.0 bits (149), Expect = 5e-08
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 30/149 (20%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
G + F+ IL A L S+ +G ++HA V+K+G+ + V NAL+ Y+KCG + V
Sbjct: 268 GFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHV 326
Query: 177 LSLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFR-----------------CMSG--- 58
++LF ++ RD+ TW ++++ ++ + + LE+F C +G
Sbjct: 327 VALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGS 386
Query: 57 ----------IDGFKVDHFTLSTLLVACG 1
+G ++ FTL+ +L ACG
Sbjct: 387 KALAFFCRMVEEGVELTDFTLTGVLNACG 415
Score = 55.8 bits (133), Expect = 3e-06
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
G+E +F+ G+L+AC L + Q+H ++K G+ + ALL + ++CG +
Sbjct: 399 GVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADA 458
Query: 177 LSLF--GEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDG-FKVDHFTLSTLLVA 7
+F G + W +++ + E+ + LF C S ++G VD + +L
Sbjct: 459 QKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLF-CQSQLEGAMVVDKVASTAVLGV 517
Query: 6 CG 1
CG
Sbjct: 518 CG 519
Score = 55.1 bits (131), Expect = 6e-06
Identities = 29/106 (27%), Positives = 54/106 (50%)
Frame = -1
Query: 324 ILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFVLSLFGEVPRRD 145
+L C L +G Q+H +K G+L + V N+++ +YSKC +D + +F +P D
Sbjct: 514 VLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHD 573
Query: 144 IATWNTVLSSLVKKFMYEKTLELFRCMSGIDGFKVDHFTLSTLLVA 7
I +WN +++ + ++ L ++ M G K D T ++ A
Sbjct: 574 IVSWNGLIAGHLLHRQGDEALSVWSKMEKA-GIKPDTVTFVLIISA 618
>emb|CBI30210.3| unnamed protein product [Vitis vinifera]
Length = 900
Score = 162 bits (411), Expect = 2e-38
Identities = 77/117 (65%), Positives = 96/117 (82%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
GIE NEFSFV IL+ C+RL L LG Q+HA+V+K+G+L+ +VSNAL+GLY KCG LD V
Sbjct: 184 GIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSV 243
Query: 177 LSLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDGFKVDHFTLSTLLVA 7
L LF E+P RDIA+WNTV+SS+VK+ MYE+ ELFR M IDGF++DHFTLST+LVA
Sbjct: 244 LQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVA 300
Score = 62.0 bits (149), Expect = 5e-08
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 30/149 (20%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
G + F+ IL A L S+ +G ++HA V+K+G+ + V NAL+ Y+KCG + V
Sbjct: 286 GFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHV 344
Query: 177 LSLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFR-----------------CMSG--- 58
++LF ++ RD+ TW ++++ ++ + + LE+F C +G
Sbjct: 345 VALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGS 404
Query: 57 ----------IDGFKVDHFTLSTLLVACG 1
+G ++ FTL+ +L ACG
Sbjct: 405 KALAFFCRMVEEGVELTDFTLTGVLNACG 433
Score = 55.8 bits (133), Expect = 3e-06
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
G+E +F+ G+L+AC L + Q+H ++K G+ + ALL + ++CG +
Sbjct: 417 GVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADA 476
Query: 177 LSLF--GEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDG-FKVDHFTLSTLLVA 7
+F G + W +++ + E+ + LF C S ++G VD + +L
Sbjct: 477 QKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLF-CQSQLEGAMVVDKVASTAVLGV 535
Query: 6 CG 1
CG
Sbjct: 536 CG 537
Score = 55.1 bits (131), Expect = 6e-06
Identities = 29/106 (27%), Positives = 54/106 (50%)
Frame = -1
Query: 324 ILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFVLSLFGEVPRRD 145
+L C L +G Q+H +K G+L + V N+++ +YSKC +D + +F +P D
Sbjct: 532 VLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHD 591
Query: 144 IATWNTVLSSLVKKFMYEKTLELFRCMSGIDGFKVDHFTLSTLLVA 7
I +WN +++ + ++ L ++ M G K D T ++ A
Sbjct: 592 IVSWNGLIAGHLLHRQGDEALSVWSKMEKA-GIKPDTVTFVLIISA 636
>emb|CAN82063.1| hypothetical protein VITISV_016431 [Vitis vinifera]
Length = 755
Score = 160 bits (404), Expect = 1e-37
Identities = 76/117 (64%), Positives = 95/117 (81%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
GIE NEFSFV IL+ C+RL L LG Q+HA+V+K+G+L+ +VSNAL+GLY KCG LD V
Sbjct: 168 GIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDXV 227
Query: 177 LSLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDGFKVDHFTLSTLLVA 7
L LF E+ RDIA+WNTV+SS+VK+ MYE+ ELFR M IDGF++DHFTLST+LVA
Sbjct: 228 LQLFDEMXHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVA 284
Score = 55.1 bits (131), Expect = 6e-06
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
G+E +F+ G+L+AC L + Q+H ++K G+ + ALL + ++CG +
Sbjct: 332 GVELTDFTXTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADA 391
Query: 177 LSLF--GEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDG-FKVDHFTLSTLLVA 7
+F G + W +++ + E+ + LF C S ++G VD + +L
Sbjct: 392 QKMFSQGXFXQSGSIIWTSMICGYARNAQPEEAISLF-CQSQLEGAMVVDXVASTAVLGV 450
Query: 6 CG 1
CG
Sbjct: 451 CG 452
>ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|222868119|gb|EEF05250.1|
predicted protein [Populus trichocarpa]
Length = 915
Score = 156 bits (395), Expect = 1e-36
Identities = 75/118 (63%), Positives = 91/118 (77%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
GIE NE+SFV IL+AC+R L +G QVHAL +KLGY V+V+NAL+GLY KCGCLD
Sbjct: 198 GIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHA 257
Query: 177 LSLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDGFKVDHFTLSTLLVAC 4
+ LF E+P+RDIA+WNT++SSLVK YEK LELFR ++ GFK D FTLSTLL AC
Sbjct: 258 IHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTAC 315
Score = 73.2 bits (178), Expect = 2e-11
Identities = 31/98 (31%), Positives = 63/98 (64%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
G +A++F+ +L+AC R + G ++HA +++G + + VSNA++G Y++CG L+ V
Sbjct: 300 GFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHV 359
Query: 177 LSLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCM 64
+LF +P RDI TW ++++ ++ + + +++F M
Sbjct: 360 AALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKM 397
Score = 56.6 bits (135), Expect = 2e-06
Identities = 30/113 (26%), Positives = 56/113 (49%)
Frame = -1
Query: 345 NEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFVLSLF 166
+E +F IL C L +G Q+H +K G+ + V N+++ +YSKC +D + F
Sbjct: 540 DEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAF 599
Query: 165 GEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDGFKVDHFTLSTLLVA 7
+P D+ +WN +++ + ++ L ++ M G K D T ++ A
Sbjct: 600 NTMPGHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKA-GIKPDAITFVLIVSA 651
>ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 152 bits (383), Expect = 4e-35
Identities = 73/118 (61%), Positives = 89/118 (75%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
GIE NE++FV IL+AC+R LGSQVH +VVKLG L CV++ NAL+GLY KCG LD V
Sbjct: 191 GIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLV 250
Query: 177 LSLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDGFKVDHFTLSTLLVAC 4
L LF E+P RDI +WNTV+SSLVK+F Y++ + FR M G KVDHF+LSTLL AC
Sbjct: 251 LRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTAC 308
Score = 68.9 bits (167), Expect = 4e-10
Identities = 34/98 (34%), Positives = 58/98 (59%)
Frame = -1
Query: 357 GIEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFV 178
G++ + FS +L+AC G Q+HAL +K+G + VS++L+G Y+KCG + V
Sbjct: 293 GLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDV 352
Query: 177 LSLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCM 64
LF +P RD+ TW +++S ++ M + +E+F M
Sbjct: 353 TDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKM 390
Score = 55.5 bits (132), Expect = 5e-06
Identities = 33/116 (28%), Positives = 58/116 (50%)
Frame = -1
Query: 354 IEANEFSFVGILSACMRLDSLTLGSQVHALVVKLGYLDCVYVSNALLGLYSKCGCLDFVL 175
I +E ILS C + +G Q+H +K G + V NA + +YSKC +D +
Sbjct: 530 IVMDEVMSTSILSLCGSIGFHEMGMQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAV 589
Query: 174 SLFGEVPRRDIATWNTVLSSLVKKFMYEKTLELFRCMSGIDGFKVDHFTLSTLLVA 7
+F + +DI +WN +++ V + +K L +++ M G K D T + ++ A
Sbjct: 590 RVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKA-GIKPDSITFALIISA 644