BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038255
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
ref|XP_002520529.1| pentatricopeptide repeat-containing protein,...    92   6e-17
ref|XP_002314162.1| predicted protein [Populus trichocarpa] gi|2...    89   4e-16
ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    84   1e-14
ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containi...    84   1e-14

>ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  102 bits (254), Expect = 3e-20
 Identities = 47/84 (55%), Positives = 66/84 (78%)
 Frame = +3

Query: 138 TLHVFTKFISLSAKLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVF 317
           T H+  + +S  AK  S+ +GIQLH T++K+GF SNV+I ++LVDMYGKCG +  AQ++F
Sbjct: 78  TAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGKCGAVSSAQRLF 137

Query: 318 DEVPHRNVVTFSSLISGYVNAQKP 389
           DE+PHRNVVT++SLISGY++   P
Sbjct: 138 DEMPHRNVVTWNSLISGYLHVGCP 161



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 27/71 (38%), Positives = 49/71 (69%)
 Frame = +3

Query: 177 KLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFDEVPHRNVVTFSS 356
           ++    LGIQ+H   MK GFC N+ + T L+D+Y K  ++  ++ +FD +P RN++T++S
Sbjct: 192 RMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTS 251

Query: 357 LISGYVNAQKP 389
           +++GY + Q+P
Sbjct: 252 MVAGYAHCQQP 262



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/76 (35%), Positives = 47/76 (61%)
 Frame = +3

Query: 141 LHVFTKFISLSAKLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFD 320
           L  FT  +     +++LD G Q+H  V+K G+ SN+ +   LV MY +CG +  A++VF 
Sbjct: 384 LFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFS 443

Query: 321 EVPHRNVVTFSSLISG 368
            +   +V++++SL+SG
Sbjct: 444 LMDRHDVISWNSLLSG 459


>ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540371|gb|EEF41942.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 606

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
 Frame = +3

Query: 6   NHLFSGAI-IPLNCRLLYTYQDFNFGYQFVSLYNEKKSNFGTNHDTLHVFTKFISLSAKL 182
           NHL S A  I  N    Y YQ +      +  +  +  +F   +       K +S  AK 
Sbjct: 27  NHLLSRAYHIASNPEQDYLYQYYQTFDSDLFAHLLRNGSFSNPY----FINKVVSFCAKF 82

Query: 183 ASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFDEVPHRNVVTFSSLI 362
           AS DLGIQLH T+++MGF SNV I +++VDMY KC ++  A +VF+E+P RN VT++SLI
Sbjct: 83  ASYDLGIQLHSTIIRMGFTSNVHICSAVVDMYAKCSEIQSAHEVFNEMPERNDVTWNSLI 142

Query: 363 SGYVN 377
            GY+N
Sbjct: 143 FGYLN 147



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 26/72 (36%), Positives = 49/72 (68%)
 Frame = +3

Query: 174 AKLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFDEVPHRNVVTFS 353
           ++L   + G Q+H   +K+GF +NVF+ T+L+DMY KC  +  + +VFD +  +NVVT++
Sbjct: 170 SQLEVRNFGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWRVFDYMVDKNVVTWT 229

Query: 354 SLISGYVNAQKP 389
           ++++ Y   ++P
Sbjct: 230 AMVTAYAQNEQP 241


>ref|XP_002314162.1| predicted protein [Populus trichocarpa] gi|222850570|gb|EEE88117.1|
           predicted protein [Populus trichocarpa]
          Length = 617

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 52/133 (39%), Positives = 76/133 (57%), Gaps = 4/133 (3%)
 Frame = +3

Query: 3   ANHLFSGAIIPLNCRLLYTY-QDFNFGYQFVSLYNEKKSNFGTNHDTL---HVFTKFISL 170
           ANHL S A+   N    ++  + FN      S  +       T H +L   +   K +S 
Sbjct: 19  ANHLLSRALTSHNHHEEHSSSRTFNSNQNTSSPVDSDLIAEFTRHGSLSNPYFLNKIVSF 78

Query: 171 SAKLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFDEVPHRNVVTF 350
            AK  S  LGIQ H T++K+GF SNV+I +++VDMY KCG++  A+ +FD++P R VVT+
Sbjct: 79  CAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYAKCGEISSARVLFDQMPQRTVVTW 138

Query: 351 SSLISGYVNAQKP 389
           +SLI GY+    P
Sbjct: 139 NSLIYGYLAVNCP 151



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 31/72 (43%), Positives = 52/72 (72%)
 Frame = +3

Query: 174 AKLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFDEVPHRNVVTFS 353
           ++L + ++G Q+H  ++K G   NV + TSLVDMY KCGD+  ++ VFD + +RNV+T++
Sbjct: 181 SQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNVITWT 240

Query: 354 SLISGYVNAQKP 389
           S+++GY   +KP
Sbjct: 241 SMVTGYSQIEKP 252


>ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/81 (49%), Positives = 57/81 (70%)
 Frame = +3

Query: 147 VFTKFISLSAKLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFDEV 326
           + TK IS+  K   LD GIQ+H T++K+GF  N +I T+LVDMYGKC  +  A +VFDE+
Sbjct: 70  ILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEM 129

Query: 327 PHRNVVTFSSLISGYVNAQKP 389
              +VVT++SL++GY+ A  P
Sbjct: 130 SCPSVVTWNSLVTGYLQAGYP 150



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/72 (44%), Positives = 49/72 (68%)
 Frame = +3

Query: 174 AKLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFDEVPHRNVVTFS 353
           ++L   DLG QLH   +K+ F SNV + T L+DMY KC ++  +++VFD + ++NV T++
Sbjct: 180 SQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWT 239

Query: 354 SLISGYVNAQKP 389
           S+ISGY   Q P
Sbjct: 240 SMISGYARNQLP 251


>ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/81 (49%), Positives = 57/81 (70%)
 Frame = +3

Query: 147 VFTKFISLSAKLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFDEV 326
           + TK IS+  K   LD GIQ+H T++K+GF  N +I T+LVDMYGKC  +  A +VFDE+
Sbjct: 70  ILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEM 129

Query: 327 PHRNVVTFSSLISGYVNAQKP 389
              +VVT++SL++GY+ A  P
Sbjct: 130 SCPSVVTWNSLVTGYLQAGYP 150



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/72 (44%), Positives = 49/72 (68%)
 Frame = +3

Query: 174 AKLASLDLGIQLHCTVMKMGFCSNVFITTSLVDMYGKCGDMLHAQQVFDEVPHRNVVTFS 353
           ++L   DLG QLH   +K+ F SNV + T L+DMY KC ++  +++VFD + ++NV T++
Sbjct: 180 SQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWT 239

Query: 354 SLISGYVNAQKP 389
           S+ISGY   Q P
Sbjct: 240 SMISGYARNQLP 251