BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038250
         (592 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab...    49   1e-06
dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis t...    45   2e-06

>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1486

 Score = 48.9 bits (115), Expect(2) = 1e-06
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
 Frame = -1

Query: 250 SMKLWHK*LGHPSKK---VIKWFHMXXXXXXXXXXXXXXXXVPT*RVFQLVM-RASIIF* 83
           S +LWH+ LGHPS K   ++ +  +                  T   F L   + S  F 
Sbjct: 503 SSQLWHQRLGHPSSKALHLLPFSDVTSSTFDSKTCEICIQAKQTRDPFPLSSNKTSFAFE 562

Query: 82  LVHCDM*GP-----LCEASYFLTLVDDYSQYI 2
           LVHCD+ GP     +C + YFLTLVDDYS+ +
Sbjct: 563 LVHCDLWGPYRTTSICGSRYFLTLVDDYSRAV 594



 Score = 28.9 bits (63), Expect(2) = 1e-06
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 411 LKREGEDFYGVVVKAIDTKDRDTRTVIGASE*KDGLFFFQGV 286
           L R     + +  K    +DR T  +IGA    +GL+FF+GV
Sbjct: 449 LTRTRRCIFQITDKVCIVQDRTTLMLIGAGRELNGLYFFRGV 490


>dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1098

 Score = 44.7 bits (104), Expect(2) = 2e-06
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
 Frame = -1

Query: 259 ENSSMKLWHK*LGHPSKKVIKWF----HMXXXXXXXXXXXXXXXXVPT*RVFQLVM-RAS 95
           E+SS  LWH  LGHPS  V+  F                           VF   + + +
Sbjct: 498 ESSSATLWHHRLGHPSTGVLLSFPEFASSSSDLEIIKSCDICYRAKQAREVFSPSLNKTT 557

Query: 94  IIF*LVHCDM*GPL-----CEASYFLTLVDDYSQYI 2
           + F L+HCD+ GP      C + YFLT+VDD+S+ +
Sbjct: 558 VCFELIHCDVWGPYRTPASCGSVYFLTIVDDFSRSV 593



 Score = 32.3 bits (72), Expect(2) = 2e-06
 Identities = 13/24 (54%), Positives = 20/24 (83%)
 Frame = -2

Query: 357 KDRDTRTVIGASE*KDGLFFFQGV 286
           +DR TRT+IGA E ++G+++F GV
Sbjct: 464 QDRFTRTLIGAGEEREGVYYFTGV 487