BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038134
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    87   1e-15
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    87   2e-15
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...    86   4e-15
gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subc...    84   9e-15
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    80   2e-13

>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
 Frame = +3

Query: 36   VINVIHGGPTAAGSSRGSRRNYQREVLQV--VGEAPKRARVEMMIDFTDYDLEGVKFPHD 209
            VIN I GG +    S+  R+ Y R+V  V  + ++      + +I F   D EG+ FPH 
Sbjct: 693  VINAITGGSSLGVESKRQRKAYVRQVNHVGTIYQSKPPVYSKTVISFGPEDAEGILFPHQ 752

Query: 210  DPLVIAPLIGTSEAKRVLIDSGASVDILFYEAFIKMRYSDSQLTPSRAPIFGFNG 374
            DPLV++  I   E +RVLID G+S D+LFY+AF KM+  + +LT +  P+ GF G
Sbjct: 753  DPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGG 807


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
 Frame = +3

Query: 36   VINVIHGGPTAAGSSRGSRRNYQREVLQVVGEAPKRARV--EMMIDFTDYDLEGVKFPHD 209
            VIN I GG +    S+  R+ Y R+V  V         V  + +I F   D EG+ FPH 
Sbjct: 693  VINAITGGSSLGVESKRQRKAYVRQVNHVGTSYQSNPPVYSKTVISFGPEDAEGILFPHQ 752

Query: 210  DPLVIAPLIGTSEAKRVLIDSGASVDILFYEAFIKMRYSDSQLTPSRAPIFGFNG 374
            DPLV++  I   E +RVLID G+S D+LFY+AF KM+  + +LT +  P+ GF G
Sbjct: 753  DPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGG 807


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
 Frame = +3

Query: 36  VINVIHGGPTAAGSSRGSRRNYQREVLQVVG--EAPKRARVEMMIDFTDYDLEGVKFPHD 209
           VIN I GG +    S+  R+ Y R++  V    ++   A    +I F   D EG+ FPH 
Sbjct: 210 VINAITGGSSLGVESKRQRKAYVRQIHHVGTSYQSVPPAYSNTVISFGPEDAEGILFPHQ 269

Query: 210 DPLVIAPLIGTSEAKRVLIDSGASVDILFYEAFIKMRYSDSQLTPSRAPIFGFNG 374
           DPLVI+  I   E +RVL+D G+S D+LFY+AF KM+  + +LT +  P+ GF G
Sbjct: 270 DPLVISVEIAQCEVQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGIPLQGFGG 324


>gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 504

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
 Frame = +3

Query: 36  VINVIHGGPTAAGSSRGSRRNYQREVLQVVG--EAPKRARVEMMIDFTDYDLEGVKFPHD 209
           VIN I GG +    S+  R+ Y R++  V    ++   A    +I F   D EG+ FPH 
Sbjct: 44  VINAITGGSSLGVESKRQRKAYVRQINHVGTSYQSIPPAYSNTVISFGPEDAEGILFPHQ 103

Query: 210 DPLVIAPLIGTSEAKRVLIDSGASVDILFYEAFIKMRYSDSQLTPSRAPIFGFNG 374
           DPLVI+  I   E +RVL+D G+S D+LFY+AF KM+  + +LT +  P+ GF G
Sbjct: 104 DPLVISVEITQCEVQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGIPLQGFGG 158


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
 Frame = +3

Query: 39  INVIHGGPTAAGSSRGSRRNYQREVLQVVGEAPKRARVEMM-IDFTDYDLEGVKFPHDDP 215
           +N+I GG TA   S  S + Y +     +  +P  A  EM  + FT  DL GV  PH+DP
Sbjct: 290 VNMIMGGLTACRDSFRSIKEYIKSGAATLWSSP--ATKEMTPLTFTSEDLFGVDLPHNDP 347

Query: 216 LVIAPLIGTSEAKRVLIDSGASVDILFYEAFIKMRYSDSQLTPSRAPIFGFNG 374
           LVI   IG SE  R+LID+G+SV+++F +   KM+  D  + PS  P+ GF+G
Sbjct: 348 LVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLTGFDG 400