BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00038003
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   128   5e-28
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...   124   8e-27
dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]                    124   8e-27
gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis tha...   124   8e-27
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]                    124   8e-27

>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  128 bits (321), Expect = 5e-28
 Identities = 58/98 (59%), Positives = 77/98 (78%)
 Frame = +2

Query: 5    LRRGQPLSLTAFSDADWGGCKDTGRSTTGYAIYLGSNIISWRSIRQKSVSRSSTEAEYKA 184
            +R    L L+AFSDADW GC D  +ST GYA++LG N+ISW S +Q +VSRSSTEAEYKA
Sbjct: 1271 IRPSLSLMLSAFSDADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKA 1330

Query: 185  VAHASAEIIWISNLLSELGFPPTNVPQIFCDNTGATYM 298
            +A+A+AE+IW+ +LL ELG   T +P+++CDN GATY+
Sbjct: 1331 MANATAEVIWLQSLLHELGIRLTGIPRLWCDNLGATYL 1368


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
            gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  124 bits (311), Expect = 8e-27
 Identities = 60/101 (59%), Positives = 75/101 (74%)
 Frame = +2

Query: 2    FLRRGQPLSLTAFSDADWGGCKDTGRSTTGYAIYLGSNIISWRSIRQKSVSRSSTEAEYK 181
            FL++G  LSL A+SDADW G KD   ST GY +YLG + ISW S +QK V RSSTEAEY+
Sbjct: 1300 FLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1359

Query: 182  AVAHASAEIIWISNLLSELGFPPTNVPQIFCDNTGATYMCA 304
            +VA+ S+E+ WI +LL+ELG   T  P I+CDN GATY+CA
Sbjct: 1360 SVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCA 1400


>dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  124 bits (311), Expect = 8e-27
 Identities = 60/101 (59%), Positives = 75/101 (74%)
 Frame = +2

Query: 2    FLRRGQPLSLTAFSDADWGGCKDTGRSTTGYAIYLGSNIISWRSIRQKSVSRSSTEAEYK 181
            FL++G  LSL A+SDADW G KD   ST GY +YLG + ISW S +QK V RSSTEAEY+
Sbjct: 1300 FLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1359

Query: 182  AVAHASAEIIWISNLLSELGFPPTNVPQIFCDNTGATYMCA 304
            +VA+ S+E+ WI +LL+ELG   T  P I+CDN GATY+CA
Sbjct: 1360 SVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCA 1400


>gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis thaliana]
            gi|338746561|dbj|BAK41510.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  124 bits (311), Expect = 8e-27
 Identities = 60/101 (59%), Positives = 75/101 (74%)
 Frame = +2

Query: 2    FLRRGQPLSLTAFSDADWGGCKDTGRSTTGYAIYLGSNIISWRSIRQKSVSRSSTEAEYK 181
            FL++G  LSL A+SDADW G KD   ST GY +YLG + ISW S +QK V RSSTEAEY+
Sbjct: 1300 FLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1359

Query: 182  AVAHASAEIIWISNLLSELGFPPTNVPQIFCDNTGATYMCA 304
            +VA+ S+E+ WI +LL+ELG   T  P I+CDN GATY+CA
Sbjct: 1360 SVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCA 1400


>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
          Length = 1431

 Score =  124 bits (311), Expect = 8e-27
 Identities = 60/101 (59%), Positives = 75/101 (74%)
 Frame = +2

Query: 2    FLRRGQPLSLTAFSDADWGGCKDTGRSTTGYAIYLGSNIISWRSIRQKSVSRSSTEAEYK 181
            FL++G  LSL A+SDADW G KD   ST GY +YLG + ISW S +QK V RSSTEAEY+
Sbjct: 1265 FLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1324

Query: 182  AVAHASAEIIWISNLLSELGFPPTNVPQIFCDNTGATYMCA 304
            +VA+ S+E+ WI +LL+ELG   T  P I+CDN GATY+CA
Sbjct: 1325 SVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCA 1365