BLASTX nr result

ID: Bupleurum21_contig00037780 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00037780
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002868029.1| zinc finger family protein [Arabidopsis lyra...   128   4e-28
ref|XP_002326729.1| predicted protein [Populus trichocarpa] gi|2...   127   7e-28
ref|NP_193526.1| RING-H2 finger protein ATL29 [Arabidopsis thali...   127   1e-27
ref|XP_002304340.1| predicted protein [Populus trichocarpa] gi|2...   122   2e-26
ref|XP_004136395.1| PREDICTED: RING-H2 finger protein ATL29-like...   121   5e-26

>ref|XP_002868029.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297313865|gb|EFH44288.1| zinc finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 294

 Score =  128 bits (322), Expect = 4e-28
 Identities = 54/84 (64%), Positives = 67/84 (79%)
 Frame = -1

Query: 324 PTSAADDPGLDAAIVNTFPMCTYAKVKQYRKAKYGLECAICLLEFEDDHVLRLIRICFHV 145
           P +   +PGLD  I+N+FP   Y+ VK  R+ KYGLECAICLLEF+ DHVLRL+  C+HV
Sbjct: 78  PEAPPVNPGLDLRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 137

Query: 144 FHQECIDLWFQMHKTCPVCRRNLE 73
           FHQECIDLWF+ H+TCPVCRR+L+
Sbjct: 138 FHQECIDLWFESHRTCPVCRRDLD 161


>ref|XP_002326729.1| predicted protein [Populus trichocarpa] gi|222834051|gb|EEE72528.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score =  127 bits (320), Expect = 7e-28
 Identities = 51/87 (58%), Positives = 71/87 (81%)
 Frame = -1

Query: 330 VNPTSAADDPGLDAAIVNTFPMCTYAKVKQYRKAKYGLECAICLLEFEDDHVLRLIRICF 151
           VNP S+ ++PGLD++ +  FP  TY+ VK +R+ ++GLECAICL EF D+ ++RL+ +C+
Sbjct: 18  VNPASSKENPGLDSSQIQLFPTFTYSSVKDFRREQHGLECAICLAEFSDEDLVRLLTVCY 77

Query: 150 HVFHQECIDLWFQMHKTCPVCRRNLEL 70
           HVFHQECIDLW + HKTCPVCRR+L+L
Sbjct: 78  HVFHQECIDLWLESHKTCPVCRRDLDL 104


>ref|NP_193526.1| RING-H2 finger protein ATL29 [Arabidopsis thaliana]
           gi|68565085|sp|O49691.1|ATL29_ARATH RecName:
           Full=RING-H2 finger protein ATL29
           gi|2894601|emb|CAA17135.1| putative protein [Arabidopsis
           thaliana] gi|7268544|emb|CAB78794.1| putative protein
           [Arabidopsis thaliana] gi|332658568|gb|AEE83968.1|
           RING-H2 finger protein ATL29 [Arabidopsis thaliana]
          Length = 289

 Score =  127 bits (318), Expect = 1e-27
 Identities = 53/84 (63%), Positives = 67/84 (79%)
 Frame = -1

Query: 324 PTSAADDPGLDAAIVNTFPMCTYAKVKQYRKAKYGLECAICLLEFEDDHVLRLIRICFHV 145
           P +   +PGL+  I+N+FP   Y+ VK  R+ KYGLECAICLLEF+ DHVLRL+  C+HV
Sbjct: 73  PEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 132

Query: 144 FHQECIDLWFQMHKTCPVCRRNLE 73
           FHQECIDLWF+ H+TCPVCRR+L+
Sbjct: 133 FHQECIDLWFESHRTCPVCRRDLD 156


>ref|XP_002304340.1| predicted protein [Populus trichocarpa] gi|222841772|gb|EEE79319.1|
           predicted protein [Populus trichocarpa]
          Length = 241

 Score =  122 bits (307), Expect = 2e-26
 Identities = 52/87 (59%), Positives = 68/87 (78%)
 Frame = -1

Query: 330 VNPTSAADDPGLDAAIVNTFPMCTYAKVKQYRKAKYGLECAICLLEFEDDHVLRLIRICF 151
           VN  S+ ++PGLD++ +  FP  TY+ VK YR+ +Y LECAICL EF  D +LRL+ +C+
Sbjct: 36  VNLASSKENPGLDSSQIQFFPTFTYSNVKDYRREQYVLECAICLAEFSYDDLLRLLTVCY 95

Query: 150 HVFHQECIDLWFQMHKTCPVCRRNLEL 70
           HVFHQECIDLW + HKTCPVCRR+L+L
Sbjct: 96  HVFHQECIDLWLEAHKTCPVCRRDLDL 122


>ref|XP_004136395.1| PREDICTED: RING-H2 finger protein ATL29-like [Cucumis sativus]
           gi|449520675|ref|XP_004167359.1| PREDICTED: RING-H2
           finger protein ATL29-like [Cucumis sativus]
          Length = 311

 Score =  121 bits (304), Expect = 5e-26
 Identities = 55/94 (58%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
 Frame = -1

Query: 348 SPRSAAVNPTS--AADDPGLDAAIVNTFPMCTYAKVKQYRKAKYGLECAICLLEFEDDHV 175
           SP    ++PTS   A  PGLD  ++N+FP   Y+ +K++R  K GLECAICLLEF+DD  
Sbjct: 58  SPSGNLLHPTSDSPAPHPGLDPLLINSFPTFPYSGIKEFRSDKIGLECAICLLEFDDDSF 117

Query: 174 LRLIRICFHVFHQECIDLWFQMHKTCPVCRRNLE 73
           LRL+  C HVFHQECIDLW   HKTCPVCRR+L+
Sbjct: 118 LRLLTNCCHVFHQECIDLWLDSHKTCPVCRRDLD 151


Top