BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00037707
         (470 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       148   4e-34
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   141   6e-32
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   140   8e-32
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   138   4e-31
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   138   5e-31

>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  148 bits (374), Expect = 4e-34
 Identities = 73/154 (47%), Positives = 100/154 (64%)
 Frame = +3

Query: 9    LCNGYNVDKGPPRFAMKIDLFKAFDSVSWKFLLSILERMQFPEMFIKWIRKCLESAMVSV 188
            L +GYN     PR  +K+DL KAFDSV W+F+++ L  +  PE FI WI +C+ +   +V
Sbjct: 575  LVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTV 634

Query: 189  KLNGSLEGFFNIKMGLRQGDPLSPLLFVIAMEAFTAIINMETSSPLFSFHHNAVNPKISH 368
             +NG   GFF    GLRQGDPLSP LFV+AMEAF+ +++    S L  +H  A N  ISH
Sbjct: 635  SINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISH 694

Query: 369  LFFADDVMMFSKGNTDSINVLLNSIDKFALFSGL 470
            L FADDVM+F  G + S++ +  ++D FA +SGL
Sbjct: 695  LMFADDVMIFFDGGSFSLHGICETLDDFASWSGL 728


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  141 bits (355), Expect = 6e-32
 Identities = 67/154 (43%), Positives = 95/154 (61%)
 Frame = +3

Query: 9    LCNGYNVDKGPPRFAMKIDLFKAFDSVSWKFLLSILERMQFPEMFIKWIRKCLESAMVSV 188
            + +GYN      R  +K+DL KAFDSV W F++S    +  PE F+ WI +C+ +   SV
Sbjct: 576  IVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSV 635

Query: 189  KLNGSLEGFFNIKMGLRQGDPLSPLLFVIAMEAFTAIINMETSSPLFSFHHNAVNPKISH 368
             +NGS  GFF    GLRQGDPLSP LFV+AME F++++     +    +H    +  ISH
Sbjct: 636  MVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISH 695

Query: 369  LFFADDVMMFSKGNTDSINVLLNSIDKFALFSGL 470
            L FADDVM+F  G + S++ +  ++D FA +SGL
Sbjct: 696  LMFADDVMVFFDGGSSSLHGISEALDDFASWSGL 729


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  140 bits (354), Expect = 8e-32
 Identities = 67/154 (43%), Positives = 95/154 (61%)
 Frame = +3

Query: 9    LCNGYNVDKGPPRFAMKIDLFKAFDSVSWKFLLSILERMQFPEMFIKWIRKCLESAMVSV 188
            + +GYN      R  +K+DL KAFDSV W F++S    +  PE F+ WI +C+ +   SV
Sbjct: 576  IVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSV 635

Query: 189  KLNGSLEGFFNIKMGLRQGDPLSPLLFVIAMEAFTAIINMETSSPLFSFHHNAVNPKISH 368
             +NGS  GFF    GLRQGDPLSP LFV+AME F++++     +    +H    +  ISH
Sbjct: 636  MVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISH 695

Query: 369  LFFADDVMMFSKGNTDSINVLLNSIDKFALFSGL 470
            L FADDVM+F  G + S++ +  ++D FA +SGL
Sbjct: 696  LMFADDVMVFFDGGSSSLHGISEALDDFASWSGL 729


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
           thaliana]
          Length = 1253

 Score =  138 bits (348), Expect = 4e-31
 Identities = 65/154 (42%), Positives = 97/154 (62%)
 Frame = +3

Query: 9   LCNGYNVDKGPPRFAMKIDLFKAFDSVSWKFLLSILERMQFPEMFIKWIRKCLESAMVSV 188
           L  GYN     PR  +K+DL KAFDS+ W F++S L+ +  P+ F+ WI +C+ +   SV
Sbjct: 528 LVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSV 587

Query: 189 KLNGSLEGFFNIKMGLRQGDPLSPLLFVIAMEAFTAIINMETSSPLFSFHHNAVNPKISH 368
            +NG+  GFF    GLRQG+PLSP LFV+AME F++++N    +    +H       ISH
Sbjct: 588 CVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISH 647

Query: 369 LFFADDVMMFSKGNTDSINVLLNSIDKFALFSGL 470
           L FADD+M+F  G + S++ +  +++ FA +SGL
Sbjct: 648 LMFADDIMVFFDGGSSSLHGISEALEDFAFWSGL 681


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score =  138 bits (347), Expect = 5e-31
 Identities = 70/154 (45%), Positives = 96/154 (62%)
 Frame = +3

Query: 9   LCNGYNVDKGPPRFAMKIDLFKAFDSVSWKFLLSILERMQFPEMFIKWIRKCLESAMVSV 188
           L +GYN     P   +K+DL KAFDSV W F++S L  +  PE F  WI +CL +A  SV
Sbjct: 472 LVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSV 531

Query: 189 KLNGSLEGFFNIKMGLRQGDPLSPLLFVIAMEAFTAIINMETSSPLFSFHHNAVNPKISH 368
            LNG   G F    GLRQGDP+SP LFV+AME F+ ++    +S   ++H      +ISH
Sbjct: 532 ILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISH 591

Query: 369 LFFADDVMMFSKGNTDSINVLLNSIDKFALFSGL 470
           L FADDVM+F  G + S++ ++ S++ FA +SGL
Sbjct: 592 LMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGL 625