BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00037512
         (494 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containi...   264   6e-69
ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containi...   252   3e-65
ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arab...   245   3e-63
ref|NP_177601.1| pentatricopeptide repeat-containing protein [Ar...   244   5e-63
dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana] gi|6...   244   5e-63

>ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  264 bits (674), Expect = 6e-69
 Identities = 125/164 (76%), Positives = 145/164 (88%)
 Frame = -3

Query: 492 IVGFAQNGCFDESFGYFRKMQRIGMRPNEVSLTGVLSACSQAGAFEFGKILHAFMEKSGF 313
           IVGFA NG F E+FG+FR++Q++GMRPNEVSLTG LSAC+ AGA EFGKILH F+EKSGF
Sbjct: 241 IVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGF 300

Query: 312 VWISSVNNALLDTYSRCGNVCMARLIFERMPGKKSVISWTSMIAGLAMQGYAEEAMTLFM 133
           +W+ SVNNALLDTYS+CGNV MARL+FERMP K+S++SWTSMIAGLAM GY EEA+ LF 
Sbjct: 301 LWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFH 360

Query: 132 EMEASGLRPDGITFISILYACSHAGLIEEGHKYFSKMKRIYGIE 1
           EME SG+RPDGI FISILYACSHAGLIE+G++YF KMK IY IE
Sbjct: 361 EMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIE 404



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
 Frame = -3

Query: 414 PNEVSLTGVLSACSQAGAFEFGKILHAFMEKSGFV-WISSVNNALLDTYSRCGNVCMARL 238
           PN V+   V++AC + G  +   ++   M       W     N +L  Y++ G + +AR 
Sbjct: 170 PNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSW-----NVMLAGYTKAGELELARK 224

Query: 237 IFERMPGKKSVISWTSMIAGLAMQGYAEEAMTLFMEMEASGLRPDGITFISILYACSHAG 58
           +F  MP K  V SW++MI G A  G+  EA   F E++  G+RP+ ++    L AC+ AG
Sbjct: 225 LFLEMPVKDDV-SWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAG 283

Query: 57  LIEEG 43
            IE G
Sbjct: 284 AIEFG 288


>ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  252 bits (643), Expect = 3e-65
 Identities = 118/164 (71%), Positives = 143/164 (87%)
 Frame = -3

Query: 492 IVGFAQNGCFDESFGYFRKMQRIGMRPNEVSLTGVLSACSQAGAFEFGKILHAFMEKSGF 313
           IVGFA NGCFDE+FG+FR++ R  +R NEVSLTGVLSAC+QAGAFEFGKILH F+EK+GF
Sbjct: 238 IVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGF 297

Query: 312 VWISSVNNALLDTYSRCGNVCMARLIFERMPGKKSVISWTSMIAGLAMQGYAEEAMTLFM 133
           +++ SVNNAL+DTYS+CGNV MARL+F+ MP  +S++SWTS+IAGLAM G  EEA+ LF 
Sbjct: 298 LYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFH 357

Query: 132 EMEASGLRPDGITFISILYACSHAGLIEEGHKYFSKMKRIYGIE 1
           EME SG+RPDGITFIS+LYACSH+GL+EEG   FSKMK +YGIE
Sbjct: 358 EMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIE 401


>ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata] gi|297333389|gb|EFH63807.1| hypothetical protein
           ARALYDRAFT_339650 [Arabidopsis lyrata subsp. lyrata]
          Length = 1221

 Score =  245 bits (625), Expect = 3e-63
 Identities = 118/164 (71%), Positives = 138/164 (84%)
 Frame = -3

Query: 492 IVGFAQNGCFDESFGYFRKMQRIGMRPNEVSLTGVLSACSQAGAFEFGKILHAFMEKSGF 313
           IVGF+ NG F+ESF YFR++ R  MRPNEVSLTGVLSACSQ+GAFEFGK LH F+EKSG+
Sbjct: 408 IVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGY 467

Query: 312 VWISSVNNALLDTYSRCGNVCMARLIFERMPGKKSVISWTSMIAGLAMQGYAEEAMTLFM 133
            WI SVNNAL+D YSRCGNV MARL+FE M  K+S++SWTSMIAGLAM G+ EEA+ +F 
Sbjct: 468 SWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFN 527

Query: 132 EMEASGLRPDGITFISILYACSHAGLIEEGHKYFSKMKRIYGIE 1
           EM  SG+ PD I+FIS+LYACSHAGLI+EG  YFSKMKR+Y IE
Sbjct: 528 EMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIE 571



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
 Frame = -3

Query: 483 FAQNGCFDESFGYFRKMQRIGMRPNEVSLTGVLSACSQAGAFEFGK-ILHAFMEKSGFVW 307
           + + GC     G+ RK+     +PN V+   V++AC +       + I    + ++   W
Sbjct: 318 YGECGCV----GFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSW 373

Query: 306 ISSVNNALLDTYSRCGNVCMARLIFERMPGKKSVISWTSMIAGLAMQGYAEEAMTLFMEM 127
                N +L  Y + G +  A+ IF  MP +  V SW++MI G +  G   E+ + F E+
Sbjct: 374 -----NVMLAGYIKAGELECAKRIFSEMPHRDDV-SWSTMIVGFSHNGSFNESFSYFREL 427

Query: 126 EASGLRPDGITFISILYACSHAGLIEEG 43
             + +RP+ ++   +L ACS +G  E G
Sbjct: 428 LRAEMRPNEVSLTGVLSACSQSGAFEFG 455


>ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g74630 gi|12324801|gb|AAG52363.1|AC011765_15
           hypothetical protein; 86841-88772 [Arabidopsis thaliana]
           gi|332197495|gb|AEE35616.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  244 bits (623), Expect = 5e-63
 Identities = 118/164 (71%), Positives = 138/164 (84%)
 Frame = -3

Query: 492 IVGFAQNGCFDESFGYFRKMQRIGMRPNEVSLTGVLSACSQAGAFEFGKILHAFMEKSGF 313
           IVG A NG F+ESF YFR++QR GM PNEVSLTGVLSACSQ+G+FEFGKILH F+EK+G+
Sbjct: 241 IVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY 300

Query: 312 VWISSVNNALLDTYSRCGNVCMARLIFERMPGKKSVISWTSMIAGLAMQGYAEEAMTLFM 133
            WI SVNNAL+D YSRCGNV MARL+FE M  K+ ++SWTSMIAGLAM G  EEA+ LF 
Sbjct: 301 SWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFN 360

Query: 132 EMEASGLRPDGITFISILYACSHAGLIEEGHKYFSKMKRIYGIE 1
           EM A G+ PDGI+FIS+L+ACSHAGLIEEG  YFS+MKR+Y IE
Sbjct: 361 EMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIE 404



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
 Frame = -3

Query: 471 GCFDESFGYFRKMQRIGMRPNEVSLTGVLSACSQ----AGAFEFGKILHAFMEKSGFVWI 304
           GC + +   F +M +    PN V+   V++AC +    AGA E   I    + ++   W 
Sbjct: 155 GCVEFARKVFDEMHQ----PNLVAWNAVITACFRGNDVAGARE---IFDKMLVRNHTSW- 206

Query: 303 SSVNNALLDTYSRCGNVCMARLIFERMPGKKSVISWTSMIAGLAMQGYAEEAMTLFMEME 124
               N +L  Y + G +  A+ IF  MP +  V SW++MI G+A  G   E+   F E++
Sbjct: 207 ----NVMLAGYIKAGELESAKRIFSEMPHRDDV-SWSTMIVGIAHNGSFNESFLYFRELQ 261

Query: 123 ASGLRPDGITFISILYACSHAGLIEEG 43
            +G+ P+ ++   +L ACS +G  E G
Sbjct: 262 RAGMSPNEVSLTGVLSACSQSGSFEFG 288


>dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
           gi|62318835|dbj|BAD93890.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 635

 Score =  244 bits (623), Expect = 5e-63
 Identities = 118/164 (71%), Positives = 138/164 (84%)
 Frame = -3

Query: 492 IVGFAQNGCFDESFGYFRKMQRIGMRPNEVSLTGVLSACSQAGAFEFGKILHAFMEKSGF 313
           IVG A NG F+ESF YFR++QR GM PNEVSLTGVLSACSQ+G+FEFGKILH F+EK+G+
Sbjct: 233 IVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY 292

Query: 312 VWISSVNNALLDTYSRCGNVCMARLIFERMPGKKSVISWTSMIAGLAMQGYAEEAMTLFM 133
            WI SVNNAL+D YSRCGNV MARL+FE M  K+ ++SWTSMIAGLAM G  EEA+ LF 
Sbjct: 293 SWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFN 352

Query: 132 EMEASGLRPDGITFISILYACSHAGLIEEGHKYFSKMKRIYGIE 1
           EM A G+ PDGI+FIS+L+ACSHAGLIEEG  YFS+MKR+Y IE
Sbjct: 353 EMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIE 396



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
 Frame = -3

Query: 471 GCFDESFGYFRKMQRIGMRPNEVSLTGVLSACSQ----AGAFEFGKILHAFMEKSGFVWI 304
           GC + +   F +M +    PN V+   V++AC +    AGA E   I    + ++   W 
Sbjct: 147 GCVEFARKVFDEMHQ----PNLVAWNAVITACFRGNDVAGARE---IFDKMLVRNHTSW- 198

Query: 303 SSVNNALLDTYSRCGNVCMARLIFERMPGKKSVISWTSMIAGLAMQGYAEEAMTLFMEME 124
               N +L  Y + G +  A+ IF  MP +  V SW++MI G+A  G   E+   F E++
Sbjct: 199 ----NVMLAGYIKAGELESAKRIFSEMPHRDDV-SWSTMIVGIAHNGSFNESFLYFRELQ 253

Query: 123 ASGLRPDGITFISILYACSHAGLIEEG 43
            +G+ P+ ++   +L ACS +G  E G
Sbjct: 254 RAGMSPNEVSLTGVLSACSQSGSFEFG 280