BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00037097
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003597923.1| Signal recognition particle [Medicago trunca...    69   2e-19
gb|AAG29734.1|AC084414_2 signal recognition particle 54 kDa prot...    63   1e-17
sp|P49971.1|SR541_SOLLC RecName: Full=Signal recognition particl...    63   5e-17
gb|AAA66199.1| signal recognition particle 54 kDa subunit [Arabi...    63   3e-16
ref|NP_199761.1| Signal recognition particle SRP54 subunit prote...    63   3e-16

>ref|XP_003597923.1| Signal recognition particle [Medicago truncatula]
           gi|355486971|gb|AES68174.1| Signal recognition particle
           [Medicago truncatula]
          Length = 512

 Score = 68.6 bits (166), Expect(2) = 2e-19
 Identities = 40/62 (64%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = +3

Query: 159 FSNDYCCTESHPFKIVV-GVVRS*RENHLLIIVDISGHHKQEAALFEEMRRLSEATKPEL 335
           F N Y   ES P KI V GV R   E+H LIIVD SG HKQEA+LFEEMR+LSEATKP+L
Sbjct: 192 FLNSYM--ESDPVKIAVEGVERFKEEDHDLIIVDTSGRHKQEASLFEEMRQLSEATKPDL 249

Query: 336 SV 341
            +
Sbjct: 250 VI 251



 Score = 51.6 bits (122), Expect(2) = 2e-19
 Identities = 27/52 (51%), Positives = 36/52 (69%)
 Frame = +1

Query: 1   GSEKTTTCIR*QICLLLPEERLETSILVCADSYRAGAFDKL*QSATKANVPF 156
           GS KTTTC +   C    +++     LVCAD++RAGAFD+L Q+ATKA +PF
Sbjct: 132 GSGKTTTCTKYAHCY---QKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF 180


>gb|AAG29734.1|AC084414_2 signal recognition particle 54 kDa protein 2 (SRP54), putative
           [Arabidopsis thaliana]
          Length = 522

 Score = 62.8 bits (151), Expect(3) = 1e-17
 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
 Frame = +3

Query: 180 TESHPFKIVV-GVVRS*RENHLLIIVDISGHHKQEAALFEEMRRLSEATKPELSV 341
           TES P KI V GV    +EN  LIIVD SG HKQEA+LFEEMR+++EATKP+L +
Sbjct: 191 TESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVI 245



 Score = 48.5 bits (114), Expect(3) = 1e-17
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +1

Query: 1   GSEKTTTCIR*QICLLLPEERLETSILVCADSYRAGAFDKL*QSATKANVPFIFR 165
           G+ KTTTC +        +++     LVCAD++RAGAFD+L Q+ATKA +PF  R
Sbjct: 111 GAGKTTTCTK---YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGR 162



 Score = 23.1 bits (48), Expect(3) = 1e-17
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 371 K*SVAIGAVIITK 409
           K SVA+GAVIITK
Sbjct: 264 KQSVAVGAVIITK 276


>sp|P49971.1|SR541_SOLLC RecName: Full=Signal recognition particle 54 kDa protein 1;
           Short=SRP54 gi|556900|emb|CAA84275.1| 54-kD signal
           recognition particle (SRP) specific protein [Solanum
           lycopersicum]
          Length = 496

 Score = 63.2 bits (152), Expect(2) = 5e-17
 Identities = 36/55 (65%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
 Frame = +3

Query: 180 TESHPFKIVV-GVVRS*RENHLLIIVDISGHHKQEAALFEEMRRLSEATKPELSV 341
           TES P KI V GV    +EN  LIIVD SG HKQEAALFEEMR++SEA KP+L +
Sbjct: 165 TESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQKPDLVI 219



 Score = 49.3 bits (116), Expect(2) = 5e-17
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = +1

Query: 1   GSEKTTTCIR*QICLLLPEERLETSILVCADSYRAGAFDKL*QSATKANVPF 156
           GS KTTTC +        ++R     LVCAD++RAGAFD+L Q+ATKA +PF
Sbjct: 111 GSGKTTTCTK---YAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPF 159


>gb|AAA66199.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana]
          Length = 495

 Score = 62.8 bits (151), Expect(2) = 3e-16
 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
 Frame = +3

Query: 180 TESHPFKIVV-GVVRS*RENHLLIIVDISGHHKQEAALFEEMRRLSEATKPELSV 341
           T S P KI V GV R  +EN  LIIVD SG HKQ+A+LFEEMR++SEATKP+L +
Sbjct: 164 TGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVI 218



 Score = 47.0 bits (110), Expect(2) = 3e-16
 Identities = 24/52 (46%), Positives = 35/52 (67%)
 Frame = +1

Query: 1   GSEKTTTCIR*QICLLLPEERLETSILVCADSYRAGAFDKL*QSATKANVPF 156
           GS KTTTC +        +++     LVCAD++RAGAFD+L Q+ATK+ +P+
Sbjct: 111 GSGKTTTCTK---YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKSKIPY 159


>ref|NP_199761.1| Signal recognition particle SRP54 subunit protein [Arabidopsis
           thaliana] gi|341942066|sp|P49966.2|SR542_ARATH RecName:
           Full=Signal recognition particle 54 kDa protein 2;
           Short=SRP54 gi|10177616|dbj|BAB10763.1| SRP54 (signal
           recognition particle 54 KDa) protein [Arabidopsis
           thaliana] gi|332008438|gb|AED95821.1| Signal recognition
           particle SRP54 subunit protein [Arabidopsis thaliana]
          Length = 497

 Score = 62.8 bits (151), Expect(4) = 3e-16
 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
 Frame = +3

Query: 180 TESHPFKIVV-GVVRS*RENHLLIIVDISGHHKQEAALFEEMRRLSEATKPELSV 341
           T S P KI V GV R  +EN  LIIVD SG HKQ+A+LFEEMR++SEATKP+L +
Sbjct: 166 TGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVI 220



 Score = 42.0 bits (97), Expect(4) = 3e-16
 Identities = 17/26 (65%), Positives = 24/26 (92%)
 Frame = +1

Query: 79  LVCADSYRAGAFDKL*QSATKANVPF 156
           LVCAD++RAGAFD+L Q+ATK+ +P+
Sbjct: 136 LVCADTFRAGAFDQLKQNATKSKIPY 161



 Score = 21.9 bits (45), Expect(4) = 3e-16
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 2   VLRRPQHVSDDRYAYYYRKKGWKPAY*CVLT 94
           VL +PQ V         R+KG+KPA  C  T
Sbjct: 113 VLEKPQLVPS--MLIIIRRKGYKPALVCADT 141



 Score = 21.9 bits (45), Expect(4) = 3e-16
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 371 K*SVAIGAVIITK 409
           K +VA+GAVIITK
Sbjct: 239 KQTVAVGAVIITK 251