BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036468
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN06084.1| Polynucleotidyl transferase, Ribonuclease H fold ...    90   2e-16
gb|ABD32189.2| Polynucleotidyl transferase, Ribonuclease H fold ...    90   2e-16
gb|ABD28498.2| Polynucleotidyl transferase, Ribonuclease H fold ...    84   1e-14
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    83   3e-14
ref|XP_002444973.1| hypothetical protein SORBIDRAFT_07g002160 [S...    81   1e-13

>gb|ABN06084.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 519

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 40/108 (37%), Positives = 57/108 (52%)
 Frame = +3

Query: 3   DRLAWVHSPNGQYSVRTGYKYWQERNIGVQDVSQSNGWGRIWRMAIPHKIKIFLWRFCRN 182
           DR+ W    +G+YSVR+ Y    E  I    + +   W  IWR+ +P KIK F+WR CR 
Sbjct: 131 DRIIWKAENDGKYSVRSAYTLCVEELIDTSFLRRPGYWSDIWRLKVPPKIKNFMWRVCRG 190

Query: 183 TIPVKNRLRHKGVRVPIGCSMCIGDIEHLMHTFLDCAYAKHCWHVAGL 326
            +P +N+LR KGV+ P  C  C    E + H F  C +    W ++ L
Sbjct: 191 VLPTRNKLRDKGVQCPEACVNCSTTSEDVKHLFCVCTFDVQVWQLSDL 238


>gb|ABD32189.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 612

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 40/108 (37%), Positives = 57/108 (52%)
 Frame = +3

Query: 3   DRLAWVHSPNGQYSVRTGYKYWQERNIGVQDVSQSNGWGRIWRMAIPHKIKIFLWRFCRN 182
           DR+ W    +G+YSVR+ Y    E  I    + +   W  IWR+ +P KIK F+WR CR 
Sbjct: 224 DRIIWKAENDGKYSVRSAYTLCVEELIDTSFLRRPGYWSDIWRLKVPPKIKNFMWRVCRG 283

Query: 183 TIPVKNRLRHKGVRVPIGCSMCIGDIEHLMHTFLDCAYAKHCWHVAGL 326
            +P +N+LR KGV+ P  C  C    E + H F  C +    W ++ L
Sbjct: 284 VLPTRNKLRDKGVQCPEACVNCSTTSEDVKHLFCVCTFDVQVWQLSDL 331


>gb|ABD28498.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 424

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 35/108 (32%), Positives = 55/108 (50%)
 Frame = +3

Query: 3   DRLAWVHSPNGQYSVRTGYKYWQERNIGVQDVSQSNGWGRIWRMAIPHKIKIFLWRFCRN 182
           D   W    +G YS+R+ Y      N  +     +  W  IW + +P K+K F+WR CRN
Sbjct: 176 DIATWRFEKDGNYSIRSAYCDILNNNTALNQHRVNGSWNSIWNLKLPPKVKNFMWRACRN 235

Query: 183 TIPVKNRLRHKGVRVPIGCSMCIGDIEHLMHTFLDCAYAKHCWHVAGL 326
            +P + +L+ +GV+ P+ C++  G  E   H F DC  +  CW  + L
Sbjct: 236 CLPTRVKLQSRGVQCPMDCAVYAGPYEDSSHLFFDCGKSISCWQRSDL 283


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
 Frame = +3

Query: 3    DRLAWVHSPNGQYSVRTGYKY---------WQERNIGVQDVSQSNGWGRIWRMAIPHKIK 155
            D   W+HS NG YSV+TGY++         +QE  +     S ++ + +IW +    KI+
Sbjct: 999  DSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKV---KPSVNSLFDKIWNLHTAPKIR 1055

Query: 156  IFLWRFCRNTIPVKNRLRHKGVRVPIGCSMCIGDIEHLMHTFLDCAYAKHCWHVAGLDPK 335
            IFLW+     IPV++RLR +G+R   GC MC  + E + H   +C  A+  W +  L   
Sbjct: 1056 IFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHL--S 1113

Query: 336  TTGVEFA 356
            + G EF+
Sbjct: 1114 SAGSEFS 1120


>ref|XP_002444973.1| hypothetical protein SORBIDRAFT_07g002160 [Sorghum bicolor]
           gi|241941323|gb|EES14468.1| hypothetical protein
           SORBIDRAFT_07g002160 [Sorghum bicolor]
          Length = 469

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
 Frame = +3

Query: 3   DRLAWVHSPNGQYSVRTGY-------KYWQERNIGVQDVSQ----SNGWGRIWRMAIPHK 149
           D LAW + P G +SV++ Y       +  + R IG    S     +N W +IW++  P K
Sbjct: 164 DTLAWHYDPKGDFSVKSAYHVLTDMKELSKRRQIGEASASLISPCNNNWHKIWKLHCPPK 223

Query: 150 IKIFLWRFCRNTIPVKNRLRHKGVRVPIGCSMCIGDIEHLMHTFLDCAYAKHCWHVAGLD 329
           +K+F WRF  N++P++  +  +G+ +   C +C    E   H FL C + K CW    L+
Sbjct: 224 VKLFFWRFTHNSLPLRMNILRRGMDIDTRCPVCWRLNEDGGHCFLRCKFVKKCWRALNLE 283