BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00036122
         (419 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518871.1| conserved hypothetical protein [Ricinus comm...    81   1e-21
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici...    62   6e-13
gb|ABD28498.2| Polynucleotidyl transferase, Ribonuclease H fold ...    64   8e-13
ref|XP_003622120.1| Pentatricopeptide repeat-containing protein ...    67   2e-12
ref|XP_002450845.1| hypothetical protein SORBIDRAFT_05g019570 [S...    60   8e-12

>ref|XP_002518871.1| conserved hypothetical protein [Ricinus communis]
           gi|223541858|gb|EEF43404.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 668

 Score = 81.3 bits (199), Expect(2) = 1e-21
 Identities = 38/92 (41%), Positives = 52/92 (56%)
 Frame = -1

Query: 278 GFTL*KSAYALLQIDRNRSNMSDNSVFWRKLWNLKVPLKVKNFLWRASSSCLPTKVQLRG 99
           G  L K+ Y LLQ D  R   S    FW K W LK+P KV+N +W+  S+C+ T + LR 
Sbjct: 405 GNYLVKNCYRLLQGDLGRPETS----FWNKFWKLKIPTKVRNLMWKICSNCIRTAMNLRM 460

Query: 98  KLVDVFDLCPMCNAVPESILHILVTCPFSASC 3
           + VD+  LC  CN  PE++ H+L  C  +  C
Sbjct: 461 RYVDLDPLCKWCNREPETLFHVLFGCSMAREC 492



 Score = 46.6 bits (109), Expect(2) = 1e-21
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -3

Query: 417 LMIIDQNQWDSDLIDDIFEERYANLIYALSLHNSD-HDSWYWRKEKLGFYSVKKC 256
           ++ I++ +WD D++ D+F  R   LI ++ L N +  DSWYW  +  G Y VK C
Sbjct: 358 ILQINERRWDGDILVDLFNGRDKRLIESIPLTNRNVEDSWYWLFDDKGNYLVKNC 412


>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223538337|gb|EEF39944.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 483

 Score = 62.4 bits (150), Expect(2) = 6e-13
 Identities = 28/63 (44%), Positives = 38/63 (60%)
 Frame = -1

Query: 209 NSVFWRKLWNLKVPLKVKNFLWRASSSCLPTKVQLRGKLVDVFDLCPMCNAVPESILHIL 30
           N V WR+LW L +  K K F+WRA ++ LP +  L  + V     CP C + PE+I+HIL
Sbjct: 180 NVVVWRRLWKLNIAAKCKVFMWRALTNRLPVRTNLVMRKVTEDSSCPCCVSQPETIMHIL 239

Query: 29  VTC 21
           V C
Sbjct: 240 VLC 242



 Score = 36.2 bits (82), Expect(2) = 6e-13
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 393 WDSDLIDDIFEERYANLIYALSLHNS-DHDSWYWRKEKLGFYSVK 262
           WD ++++D+F ER  NLI ++ L  +   D  +W K+  G +SVK
Sbjct: 119 WDQEILNDLFSERDKNLINSIVLSPTVGTDQLFWFKDPKGKFSVK 163


>gb|ABD28498.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 424

 Score = 63.5 bits (153), Expect(2) = 8e-13
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
 Frame = -1

Query: 263 KSAYALLQIDRNRSNMSDNSVFWRKLWNLKVPLKVKNFLWRASSSCLPTKVQLRGKLVDV 84
           +SAY  +  +    N    +  W  +WNLK+P KVKNF+WRA  +CLPT+V+L+ + V  
Sbjct: 191 RSAYCDILNNNTALNQHRVNGSWNSIWNLKLPPKVKNFMWRACRNCLPTRVKLQSRGVQ- 249

Query: 83  FDLCPMCNAV----PESILHILVTCPFSASC 3
              CPM  AV     E   H+   C  S SC
Sbjct: 250 ---CPMDCAVYAGPYEDSSHLFFDCGKSISC 277



 Score = 34.7 bits (78), Expect(2) = 8e-13
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 417 LMIIDQNQWDSDLIDDIFEERYANLIYALSLHNS-DHDSWYWRKEKLGFYSVKKCLCSSP 241
           L+ ++  QW+   I+ +F+   A  IY   L  S   D   WR EK G YS++   C   
Sbjct: 139 LLQVNAKQWNKSFINYVFDTGTAEQIYKTPLLPSVQQDIATWRFEKDGNYSIRSAYCDIL 198

Query: 240 N 238
           N
Sbjct: 199 N 199


>ref|XP_003622120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355497135|gb|AES78338.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 66.6 bits (161), Expect(2) = 2e-12
 Identities = 28/65 (43%), Positives = 40/65 (61%)
 Frame = -1

Query: 197 WRKLWNLKVPLKVKNFLWRASSSCLPTKVQLRGKLVDVFDLCPMCNAVPESILHILVTCP 18
           W  +W+LK+P KVKNFLWRA  +CLPT+++L+ K V   D C MC+   +   H+  T  
Sbjct: 256 WNCIWSLKLPPKVKNFLWRACRNCLPTRIRLQSKGVQCTDRCAMCDYFGKDSTHLFFTWD 315

Query: 17  FSASC 3
             + C
Sbjct: 316 KKSGC 320



 Score = 30.0 bits (66), Expect(2) = 2e-12
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 417 LMIIDQNQWDSDLID-DIFEERYANLIYALSLHNS-DHDSWYWRKEKLGFYSVKKCLCSS 244
           L++  Q QW+ +LI    F+   A  I+   L  S  HD   W  E+ G YSVK      
Sbjct: 181 LLVTPQKQWNMELIKLFFFDNATARNIFNTPLFPSVAHDVPVWMFERDGAYSVKSAYKDI 240

Query: 243 PNRQKQIKH 217
            N    + H
Sbjct: 241 LNHDVTVVH 249


>ref|XP_002450845.1| hypothetical protein SORBIDRAFT_05g019570 [Sorghum bicolor]
           gi|241936688|gb|EES09833.1| hypothetical protein
           SORBIDRAFT_05g019570 [Sorghum bicolor]
          Length = 490

 Score = 59.7 bits (143), Expect(2) = 8e-12
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
 Frame = -1

Query: 263 KSAYALL------QIDRNRSNMSDNSVFWRKLWNLKVPLKVKNFLWRASSSCLPTKVQLR 102
           +SAY ++      Q ++ R++ S + + WR++W L VPLKV+ F WR  +  LP K  L 
Sbjct: 304 RSAYRIVYNEHWQQAEQGRASASGD-ISWRRIWRLCVPLKVRVFWWRVINGFLPAKGVLN 362

Query: 101 GKLVDVFDLCPMCNAVPESILHILVTC 21
            + ++    C +C A  ESI H+L+ C
Sbjct: 363 KRHIEPVPNCDVCGADEESIKHVLMDC 389



 Score = 35.0 bits (79), Expect(2) = 8e-12
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 414 MIIDQNQWDSDLIDDIFEERYANLIYALSLHNSDHDSWYWRKEKLGFYSVK 262
           +I     W+ ++I   F +  A+ I +  +  +  D W W  EK G YSV+
Sbjct: 254 LITPSGAWNEEMIKHTFADIDAHAILSTPIRGTGQDIWGWEPEKHGCYSVR 304