BLASTX nr result

ID: Bupleurum21_contig00035898 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035898
         (526 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303149.1| predicted protein [Populus trichocarpa] gi|2...   193   1e-47
emb|CBI29756.3| unnamed protein product [Vitis vinifera]              184   5e-45
ref|XP_002265586.1| PREDICTED: ATP-dependent DNA helicase Q-like...   184   5e-45
ref|XP_003592992.1| ATP-dependent DNA helicase Q1, partial [Medi...   171   6e-41
ref|XP_003592989.1| ATP-dependent DNA helicase Q1 [Medicago trun...   171   6e-41

>ref|XP_002303149.1| predicted protein [Populus trichocarpa] gi|222840581|gb|EEE78128.1|
           predicted protein [Populus trichocarpa]
          Length = 1194

 Score =  193 bits (490), Expect = 1e-47
 Identities = 94/156 (60%), Positives = 116/156 (74%)
 Frame = -2

Query: 492 NYSTSNVIPGLSNIQTAHASSINGFQNTSFDDFGDDDVLESIDVDKIVMEHYQSNGTPQP 313
           N + SNV+ G     T        F  TS D   DDD++ESIDVD+IVMEHYQ+  TPQP
Sbjct: 185 NTNQSNVLAGSFVNHTVQTCQTKEFVETSADYIDDDDLIESIDVDQIVMEHYQATCTPQP 244

Query: 312 SMSTIPPLTPTVNKDYNTRPEETCLPPELCMNCSHGLKLGLCHEAANHLQSMKDMLISIS 133
           ++S  PP+TPT +++   RPEE  +PPELC NCSHG KLGLC EAA HLQ MKDMLI++S
Sbjct: 245 AISKFPPITPTADQNSFIRPEEISVPPELCSNCSHGFKLGLCPEAAKHLQEMKDMLIAVS 304

Query: 132 NDLLDNISDLNPEQVEKLRQDRVQLNKQIQQLEKHL 25
           NDLLDN ++L+  Q++KLRQDR+QLNKQIQQLEK+L
Sbjct: 305 NDLLDNAAELSQAQIDKLRQDRLQLNKQIQQLEKYL 340


>emb|CBI29756.3| unnamed protein product [Vitis vinifera]
          Length = 1235

 Score =  184 bits (468), Expect = 5e-45
 Identities = 97/155 (62%), Positives = 112/155 (72%)
 Frame = -2

Query: 465 GLSNIQTAHASSINGFQNTSFDDFGDDDVLESIDVDKIVMEHYQSNGTPQPSMSTIPPLT 286
           G  N+ T     + G      DD   DD+LE IDVD+IVMEHYQS  TPQPS+S +PP+T
Sbjct: 174 GTCNVHTGQVKELVGAFPNGTDD---DDILEDIDVDQIVMEHYQSTCTPQPSISKLPPVT 230

Query: 285 PTVNKDYNTRPEETCLPPELCMNCSHGLKLGLCHEAANHLQSMKDMLISISNDLLDNISD 106
           PT++     + EET LP ELC NCSHG KLGLC EAANHLQ +KDMLI ISN+LLDN+ D
Sbjct: 231 PTLSTVNIAKHEETFLPLELCSNCSHGFKLGLCPEAANHLQELKDMLIVISNELLDNV-D 289

Query: 105 LNPEQVEKLRQDRVQLNKQIQQLEKHLHITSVEEE 1
           L   QVEKLRQDR+ LNKQIQQLE HLH  SV+EE
Sbjct: 290 LTSVQVEKLRQDRLYLNKQIQQLEIHLHSVSVDEE 324


>ref|XP_002265586.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Vitis
           vinifera]
          Length = 1224

 Score =  184 bits (468), Expect = 5e-45
 Identities = 97/155 (62%), Positives = 112/155 (72%)
 Frame = -2

Query: 465 GLSNIQTAHASSINGFQNTSFDDFGDDDVLESIDVDKIVMEHYQSNGTPQPSMSTIPPLT 286
           G  N+ T     + G      DD   DD+LE IDVD+IVMEHYQS  TPQPS+S +PP+T
Sbjct: 163 GTCNVHTGQVKELVGAFPNGTDD---DDILEDIDVDQIVMEHYQSTCTPQPSISKLPPVT 219

Query: 285 PTVNKDYNTRPEETCLPPELCMNCSHGLKLGLCHEAANHLQSMKDMLISISNDLLDNISD 106
           PT++     + EET LP ELC NCSHG KLGLC EAANHLQ +KDMLI ISN+LLDN+ D
Sbjct: 220 PTLSTVNIAKHEETFLPLELCSNCSHGFKLGLCPEAANHLQELKDMLIVISNELLDNV-D 278

Query: 105 LNPEQVEKLRQDRVQLNKQIQQLEKHLHITSVEEE 1
           L   QVEKLRQDR+ LNKQIQQLE HLH  SV+EE
Sbjct: 279 LTSVQVEKLRQDRLYLNKQIQQLEIHLHSVSVDEE 313


>ref|XP_003592992.1| ATP-dependent DNA helicase Q1, partial [Medicago truncatula]
           gi|355482040|gb|AES63243.1| ATP-dependent DNA helicase
           Q1, partial [Medicago truncatula]
          Length = 556

 Score =  171 bits (433), Expect = 6e-41
 Identities = 88/163 (53%), Positives = 112/163 (68%), Gaps = 2/163 (1%)
 Frame = -2

Query: 483 TSNVIPGLSNIQTAHASSINGFQNTSFD--DFGDDDVLESIDVDKIVMEHYQSNGTPQPS 310
           TS V+  L N  T +    N       D  +  DDD+LES+D+D+IV E YQS  TPQP 
Sbjct: 119 TSRVVDSLVNNHTKYTGQTNESTKCVADTINIDDDDILESMDLDQIV-EKYQSTCTPQPP 177

Query: 309 MSTIPPLTPTVNKDYNTRPEETCLPPELCMNCSHGLKLGLCHEAANHLQSMKDMLISISN 130
           MS  PP TPT +KD      +T LPPELC+NC HG KLG+C EAA+HLQ  KD LI+ISN
Sbjct: 178 MSKFPPFTPTADKDNFAGQGDTFLPPELCLNCIHGYKLGICPEAASHLQEFKDNLIAISN 237

Query: 129 DLLDNISDLNPEQVEKLRQDRVQLNKQIQQLEKHLHITSVEEE 1
           +L+DN+ +L+  Q+ KLRQDR QLN QIQQLEK++H +++EEE
Sbjct: 238 ELIDNVENLSSVQIAKLRQDRSQLNNQIQQLEKYIHSSNLEEE 280


>ref|XP_003592989.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
           gi|355482037|gb|AES63240.1| ATP-dependent DNA helicase
           Q1 [Medicago truncatula]
          Length = 1156

 Score =  171 bits (433), Expect = 6e-41
 Identities = 88/163 (53%), Positives = 112/163 (68%), Gaps = 2/163 (1%)
 Frame = -2

Query: 483 TSNVIPGLSNIQTAHASSINGFQNTSFD--DFGDDDVLESIDVDKIVMEHYQSNGTPQPS 310
           TS V+  L N  T +    N       D  +  DDD+LES+D+D+IV E YQS  TPQP 
Sbjct: 136 TSRVVDSLVNNHTKYTGQTNESTKCVADTINIDDDDILESMDLDQIV-EKYQSTCTPQPP 194

Query: 309 MSTIPPLTPTVNKDYNTRPEETCLPPELCMNCSHGLKLGLCHEAANHLQSMKDMLISISN 130
           MS  PP TPT +KD      +T LPPELC+NC HG KLG+C EAA+HLQ  KD LI+ISN
Sbjct: 195 MSKFPPFTPTADKDNFAGQGDTFLPPELCLNCIHGYKLGICPEAASHLQEFKDNLIAISN 254

Query: 129 DLLDNISDLNPEQVEKLRQDRVQLNKQIQQLEKHLHITSVEEE 1
           +L+DN+ +L+  Q+ KLRQDR QLN QIQQLEK++H +++EEE
Sbjct: 255 ELIDNVENLSSVQIAKLRQDRSQLNNQIQQLEKYIHSSNLEEE 297


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