BLASTX nr result

ID: Bupleurum21_contig00035347 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035347
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003538789.1| PREDICTED: protein SHORT-ROOT-like [Glycine ...   171   6e-41
ref|XP_003517347.1| PREDICTED: protein SHORT-ROOT-like [Glycine ...   168   5e-40
emb|CAN75901.1| hypothetical protein VITISV_001968 [Vitis vinifera]   167   8e-40
ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-like isoform 2...   167   1e-39
ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-like isoform 1...   167   1e-39

>ref|XP_003538789.1| PREDICTED: protein SHORT-ROOT-like [Glycine max]
          Length = 482

 Score =  171 bits (433), Expect = 6e-41
 Identities = 81/118 (68%), Positives = 98/118 (83%)
 Frame = +2

Query: 2   ATIQKVMREISYRMEKFARLMGVPFKFNVIHHIGDLSELNSAVLDVQEDEALVINCVGSL 181
           AT QKVM+EI  RMEKFARLMGVPFKFNV+HH+G LS+L+ +VLD++EDEAL INCV +L
Sbjct: 256 ATAQKVMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFSVLDIKEDEALAINCVNTL 315

Query: 182 HSIKKENDRRNVFLTMLSRLRPSIVTVVEEEADLDVGADGDEFVKGSEECLKWFRVYF 355
           HSI    + R+  ++ L RL+P IVTVVEEEADLD+G +G EFVKG EECL+WFRVYF
Sbjct: 316 HSIAAVGNHRDAVISSLRRLKPRIVTVVEEEADLDIGLEGFEFVKGFEECLRWFRVYF 373


>ref|XP_003517347.1| PREDICTED: protein SHORT-ROOT-like [Glycine max]
          Length = 476

 Score =  168 bits (425), Expect = 5e-40
 Identities = 79/118 (66%), Positives = 98/118 (83%)
 Frame = +2

Query: 2   ATIQKVMREISYRMEKFARLMGVPFKFNVIHHIGDLSELNSAVLDVQEDEALVINCVGSL 181
           AT QK+M+EI  RMEKFARLMGVPFKFNV+HH+G LS+L+ ++LD++EDEAL INCV +L
Sbjct: 251 ATAQKLMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFSMLDIKEDEALAINCVNTL 310

Query: 182 HSIKKENDRRNVFLTMLSRLRPSIVTVVEEEADLDVGADGDEFVKGSEECLKWFRVYF 355
           HSI    + R+  ++ L RL+P IVT+VEEEADLDVG +G EFVKG EECL+WFRVYF
Sbjct: 311 HSIAAVGNHRDAVISSLRRLKPRIVTLVEEEADLDVGLEGFEFVKGFEECLRWFRVYF 368


>emb|CAN75901.1| hypothetical protein VITISV_001968 [Vitis vinifera]
          Length = 480

 Score =  167 bits (423), Expect = 8e-40
 Identities = 77/117 (65%), Positives = 96/117 (82%)
 Frame = +2

Query: 2   ATIQKVMREISYRMEKFARLMGVPFKFNVIHHIGDLSELNSAVLDVQEDEALVINCVGSL 181
           A +QK+M+EI  RMEKFARLMGVPFKFNV+HH GDLS LN A LD+++DEAL +NCVG+L
Sbjct: 257 APVQKLMKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGAL 316

Query: 182 HSIKKENDRRNVFLTMLSRLRPSIVTVVEEEADLDVGADGDEFVKGSEECLKWFRVY 352
           HS+    +RR++ ++   RL P I+TVVEEEADLDVG DG +FVKG +ECL+WFRVY
Sbjct: 317 HSVTAVGNRRDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVY 373


>ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-like isoform 2 [Vitis vinifera]
          Length = 509

 Score =  167 bits (422), Expect = 1e-39
 Identities = 77/117 (65%), Positives = 96/117 (82%)
 Frame = +2

Query: 2   ATIQKVMREISYRMEKFARLMGVPFKFNVIHHIGDLSELNSAVLDVQEDEALVINCVGSL 181
           A +QK+M+EI  RMEKFARLMGVPFKFNV+HH GDLS LN A LD+++DEAL +NCVG+L
Sbjct: 286 APVQKLMKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGAL 345

Query: 182 HSIKKENDRRNVFLTMLSRLRPSIVTVVEEEADLDVGADGDEFVKGSEECLKWFRVY 352
           HS+    +RR++ ++   RL P I+TVVEEEADLDVG DG +FVKG +ECL+WFRVY
Sbjct: 346 HSVTAFGNRRDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVY 402


>ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-like isoform 1 [Vitis vinifera]
          Length = 494

 Score =  167 bits (422), Expect = 1e-39
 Identities = 77/117 (65%), Positives = 96/117 (82%)
 Frame = +2

Query: 2   ATIQKVMREISYRMEKFARLMGVPFKFNVIHHIGDLSELNSAVLDVQEDEALVINCVGSL 181
           A +QK+M+EI  RMEKFARLMGVPFKFNV+HH GDLS LN A LD+++DEAL +NCVG+L
Sbjct: 271 APVQKLMKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGAL 330

Query: 182 HSIKKENDRRNVFLTMLSRLRPSIVTVVEEEADLDVGADGDEFVKGSEECLKWFRVY 352
           HS+    +RR++ ++   RL P I+TVVEEEADLDVG DG +FVKG +ECL+WFRVY
Sbjct: 331 HSVTAFGNRRDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVY 387


Top