BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035234
         (435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     122   2e-26
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]               117   1e-24
gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subc...   108   6e-22
gb|AAS98502.1| putative polyprotein [Oryza sativa Japonica Group]     105   5e-21
emb|CAD39994.3| OSJNBb0045P24.11 [Oryza sativa Japonica Group]        105   5e-21

>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  122 bits (307), Expect = 2e-26
 Identities = 65/143 (45%), Positives = 88/143 (61%), Gaps = 3/143 (2%)
 Frame = +3

Query: 15   VSREDNVRADTLSRLASSDEKVLHGSIYLKVLHQPSIQRTEVNLIGQIK---NWMTPIRN 185
            + R +N RADTLS+L SS  K +  ++ + + +  SI  T V ++G I+    WMTPI  
Sbjct: 845  IPRSENNRADTLSKLTSSTIKNVSRTVLVDIRNAKSITET-VGMVGDIEAETTWMTPIMK 903

Query: 186  YLEKDISPPDRVESKKIKHRAANYTMIGGLLYRRSAVQPLLRCATPEEAKLILEEVHEGV 365
            Y      P DR  S+KIK  AA Y +  G LYRRS ++PLL+C  P +A LIL E+H+G+
Sbjct: 904  YKLTKGLPEDRSLSQKIKRIAARYLVFEGELYRRSVIRPLLKCVGPADAGLILTEIHDGI 963

Query: 366  CADHLAGKALALKILRQGYFWPT 434
            C  H+  + LA K LR GYFWPT
Sbjct: 964  CGHHMGARTLADKALRAGYFWPT 986


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score =  117 bits (293), Expect = 1e-24
 Identities = 60/140 (42%), Positives = 81/140 (57%)
 Frame = +3

Query: 15   VSREDNVRADTLSRLASSDEKVLHGSIYLKVLHQPSIQRTEVNLIGQIKNWMTPIRNYLE 194
            V RE+N RAD LSRLA+  +K  H S     L +PS+   E        NWMTPI+ YL 
Sbjct: 1436 VRRENNTRADALSRLATLKKKGAHRSAIHVTLAKPSVGTEECMATDTQPNWMTPIKQYLT 1495

Query: 195  KDISPPDRVESKKIKHRAANYTMIGGLLYRRSAVQPLLRCATPEEAKLILEEVHEGVCAD 374
              +  P     K +K +AA Y +IG  LYRR   +PLL+C  PE+   ++ E+HEG+C  
Sbjct: 1496 DGVCDPHL--EKTMKLQAARYILIGEDLYRRGYSRPLLKCLGPEQVTYVMTELHEGICGT 1553

Query: 375  HLAGKALALKILRQGYFWPT 434
            H   + ++ KILR GY+WPT
Sbjct: 1554 HSGARTMSAKILRAGYYWPT 1573


>gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1767

 Score =  108 bits (269), Expect = 6e-22
 Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 8/146 (5%)
 Frame = +3

Query: 21   REDNVRADTLSRLASSDEKVLHGSIYLKVLHQPSI--QRTEVNLIGQIK------NWMTP 176
            R+ N  AD L++ A+       G I+ +VLH PS+    +EV  I Q K      +W TP
Sbjct: 1307 RDQNEEADALAKSAACGGPHSPG-IFFEVLHAPSVPMDSSEVMTIDQEKLGEDPYDWRTP 1365

Query: 177  IRNYLEKDISPPDRVESKKIKHRAANYTMIGGLLYRRSAVQPLLRCATPEEAKLILEEVH 356
            +  +LE    P D  E+K+++HRA  Y M+ G LYR   +QPLLRC +  E + + +E+H
Sbjct: 1366 LVKHLETGWLPVDEAEAKRLQHRATKYKMVSGQLYRSGVLQPLLRCISFAEGEEMAKEIH 1425

Query: 357  EGVCADHLAGKALALKILRQGYFWPT 434
            +G+C  H A + +A K+ RQG +WPT
Sbjct: 1426 QGLCGAHQAARTVASKVFRQGVYWPT 1451


>gb|AAS98502.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1048

 Score =  105 bits (261), Expect = 5e-21
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 8/146 (5%)
 Frame = +3

Query: 21   REDNVRADTLSRLASSDEKVLHGSIYLKVLHQPSI--QRTEVNLIGQIK------NWMTP 176
            R+ N   DTL++ A+       G I+ +VLH PS+    TEV  I Q K      +W TP
Sbjct: 642  RDQNEEVDTLAKSAACGGPYSPG-IFFEVLHAPSVPMDSTEVMAIDQEKLGEDPYDWRTP 700

Query: 177  IRNYLEKDISPPDRVESKKIKHRAANYTMIGGLLYRRSAVQPLLRCATPEEAKLILEEVH 356
               +LE    P D  E+K+++ +A  Y M+ G LYR   +QPLLRC +  E + + +E+H
Sbjct: 701  FVKHLETGWLPVDEAEAKRLQLKATKYKMVSGQLYRSGVLQPLLRCISFAEGEQMAKEIH 760

Query: 357  EGVCADHLAGKALALKILRQGYFWPT 434
            +G+C  H A + +A K+ RQG +WPT
Sbjct: 761  QGLCGAHQAARTVASKVFRQGVYWPT 786


>emb|CAD39994.3| OSJNBb0045P24.11 [Oryza sativa Japonica Group]
          Length = 822

 Score =  105 bits (261), Expect = 5e-21
 Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 8/149 (5%)
 Frame = +3

Query: 12  GVSREDNVRADTLSRLASSDEKVLHGSIYLKVLHQPSIQRT--EVNLIGQIK------NW 167
           G+ R  N  AD L++ A+       G I+ +VL+ PS+     EV  I Q+K      NW
Sbjct: 414 GMKRGQNKEADALAKSAACGGPHSPG-IFFEVLYAPSVPTDILEVTTIDQVKLGEDPYNW 472

Query: 168 MTPIRNYLEKDISPPDRVESKKIKHRAANYTMIGGLLYRRSAVQPLLRCATPEEAKLILE 347
            TP   +LE    P D  E+K ++HRA  Y M+ G LY    +QPLLRC +  E + + +
Sbjct: 473 RTPFVKHLETGWLPEDEAEAKCLQHRATKYKMVSGQLYHSGVLQPLLRCISFAEGEEMAK 532

Query: 348 EVHEGVCADHLAGKALALKILRQGYFWPT 434
           E+H+G+C  H   + +A K+ RQG +WPT
Sbjct: 533 EIHQGLCGAHQVARTVASKVFRQGVYWPT 561