BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035176
         (566 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]               108   5e-22
gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thali...    99   4e-19
gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...    97   1e-18
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]              90   3e-16
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    89   4e-16

>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score =  108 bits (271), Expect = 5e-22
 Identities = 57/160 (35%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
 Frame = +2

Query: 83   PIIFINDDYEGVNPNHNEALVVSIDILNNEIKKTLVDNGSAVNICFLHTLSRMKIEGCNG 262
            PI F ++D+  ++P+ ++ +V++++I    I K LVD GS+V+I +  T  +MKI     
Sbjct: 621  PITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVDQGSSVDILYWETFKKMKIPEAEI 680

Query: 263  EPSLESPLYGFGHHAVPIIRTVTLPVTFGIHPTTITQSVKFYVINTPSSYNMLLGRPTLT 442
            +P  E  + GF    V     + L  TFG    + T ++++ ++N  +SYN+LLGRP++ 
Sbjct: 681  QPYNEQ-IVGFSRERVDTKGFIDLYTTFGDDYLSKTINIRYLLVNANTSYNILLGRPSIN 739

Query: 443  RLRAITSIPHLKVKFPT-SGRIGELKGDYETSKKCYDIAL 559
            RL+AI S PHL +KFP+ +G I  +  D +T+++CY  +L
Sbjct: 740  RLKAIVSTPHLAMKFPSVNGDIATVHIDQKTARECYVASL 779


>gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thaliana]
          Length = 1295

 Score = 99.4 bits (246), Expect = 4e-19
 Identities = 55/151 (36%), Positives = 92/151 (60%)
 Frame = +2

Query: 86  IIFINDDYEGVNPNHNEALVVSIDILNNEIKKTLVDNGSAVNICFLHTLSRMKIEGCNGE 265
           I F  ++   ++  H++ALV+S+D+ N E+++ L+D GS+V++ FL TL RM I   + +
Sbjct: 448 ISFSEEETSDLDKPHDDALVISLDVGNCEVQRVLIDTGSSVDLIFLDTLVRMGISKKDIK 507

Query: 266 PSLESPLYGFGHHAVPIIRTVTLPVTFGIHPTTITQSVKFYVINTPSSYNMLLGRPTLTR 445
            +L SPL  F      ++RT+TLPVT       I + ++F V + P++YN++LG P L  
Sbjct: 508 GAL-SPLVSFTSETSMLLRTITLPVT----AQGIVKMIEFTVFDRPAAYNIILGTPWLYE 562

Query: 446 LRAITSIPHLKVKFPTSGRIGELKGDYETSK 538
           ++A+ S  H  VKFPT   + ++ G   TS+
Sbjct: 563 MKAVPSTYHQCVKFPTPTGVKQILGSQRTSR 593


>gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 672

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
 Frame = +2

Query: 86  IIFINDDYEGVNPNHNEALVVSIDILNNEIKKTLVDNGSAVNICFLHTLSRMKIEGCN-- 259
           I F  ++   +   H++ALV+++D+ N E+ + L+D GS+V++ FL TL +M I   +  
Sbjct: 515 ISFNEEETRHLERPHDDALVITLDVANFEVSRILIDTGSSVDLIFLSTLEKMGISRGDIV 574

Query: 260 GEPSLESPLYGFGHHAVPIIRTVTLPVTFGIHPTTITQSVKFYVINTPSSYNMLLGRPTL 439
           G PS   PL  F   +   + T+ LPV        +++ V F V + P++YN++LG P +
Sbjct: 575 GPPS---PLVAFTSESAMSLGTIKLPVL----AKKVSKIVDFVVFDKPAAYNIILGTPWI 627

Query: 440 TRLRAITSIPHLKVKFPTSGRIGELKGDYETSKKCY 547
            R++A+ S  +  +KFPTS  +  ++GD E S+ CY
Sbjct: 628 YRMKAVPSTYYQCIKFPTSNGVETIRGDQEASRTCY 663


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 89.7 bits (221), Expect = 3e-16
 Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
 Frame = +2

Query: 83   PIIFINDDYEGVNPNHNEALVVSIDILNNEIKKTLVDNGSAVNICFLHTLSRMKIEGCNG 262
            PI F + D EG++  HN+ LVV + I ++ + + L+D GS+V++ F   L+ M I     
Sbjct: 599  PISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQI 658

Query: 263  EPSLESPLYGFGHHAVPIIRTVTLPVTFGIHPTTITQSVKFYVINTPSSYNMLLGRPTLT 442
            +P +  PL GF    V  I T+ LP+  G     +   VKF VI  P+ YN++LG P + 
Sbjct: 659  KP-VSKPLAGFDGDFVMTIGTIKLPIFVG----GLIAWVKFVVIGKPAVYNVILGTPWIH 713

Query: 443  RLRAITSIPHLKVKFPTSGRIGELKG---------DYETSKKC 544
            +++AI S  H  VKFPT   I  L+           YE S+ C
Sbjct: 714  QMQAIPSTYHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELC 756


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 89.4 bits (220), Expect = 4e-16
 Identities = 51/147 (34%), Positives = 85/147 (57%)
 Frame = +2

Query: 83  PIIFINDDYEGVNPNHNEALVVSIDILNNEIKKTLVDNGSAVNICFLHTLSRMKIEGCNG 262
           P+ F ++D  GV+  HN+ LV+ + I  +E+ + L+D GS+VN+ F   L +MK+   + 
Sbjct: 329 PLTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHI 388

Query: 263 EPSLESPLYGFGHHAVPIIRTVTLPVTFGIHPTTITQSVKFYVINTPSSYNMLLGRPTLT 442
           +PS+  PL GF  + +    T+ LP+  G   T      KF V++ P+ YN++LG P + 
Sbjct: 389 KPSVR-PLTGFDGNTMMTNGTIKLPIYLGGAATW----HKFVVVDKPTIYNIILGTPWIH 443

Query: 443 RLRAITSIPHLKVKFPTSGRIGELKGD 523
            ++AI S  H  +K PTS  I  ++G+
Sbjct: 444 DMQAIPSSYHQCIKIPTSIGIETIRGN 470