BLASTX nr result

ID: Bupleurum21_contig00035153 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035153
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34155.3| unnamed protein product [Vitis vinifera]              130   8e-29
ref|XP_002279923.1| PREDICTED: uncharacterized protein LOC100267...   130   8e-29
ref|XP_002319641.1| predicted protein [Populus trichocarpa] gi|2...   130   8e-29
ref|XP_002882372.1| hypothetical protein ARALYDRAFT_477743 [Arab...   130   1e-28
ref|NP_187125.1| RNA polymerase II transcription mediator [Arabi...   130   1e-28

>emb|CBI34155.3| unnamed protein product [Vitis vinifera]
          Length = 1724

 Score =  130 bits (328), Expect = 8e-29
 Identities = 71/84 (84%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
 Frame = -3

Query: 251  NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRF-XXXXXXXXXXPAIAQEELTQSE 75
            NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRF            A AQEELTQSE
Sbjct: 1444 NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQPQQQPNSATAQEELTQSE 1503

Query: 74   IGEICDYFSRRVASEPYDASRVAS 3
            IGEICDYFSRRVASEPYDASRVAS
Sbjct: 1504 IGEICDYFSRRVASEPYDASRVAS 1527


>ref|XP_002279923.1| PREDICTED: uncharacterized protein LOC100267561 [Vitis vinifera]
          Length = 1758

 Score =  130 bits (328), Expect = 8e-29
 Identities = 71/84 (84%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
 Frame = -3

Query: 251  NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRF-XXXXXXXXXXPAIAQEELTQSE 75
            NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRF            A AQEELTQSE
Sbjct: 1478 NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQPQQQPNSATAQEELTQSE 1537

Query: 74   IGEICDYFSRRVASEPYDASRVAS 3
            IGEICDYFSRRVASEPYDASRVAS
Sbjct: 1538 IGEICDYFSRRVASEPYDASRVAS 1561


>ref|XP_002319641.1| predicted protein [Populus trichocarpa] gi|222858017|gb|EEE95564.1|
            predicted protein [Populus trichocarpa]
          Length = 1740

 Score =  130 bits (328), Expect = 8e-29
 Identities = 71/84 (84%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
 Frame = -3

Query: 251  NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRF-XXXXXXXXXXPAIAQEELTQSE 75
            NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRF            A AQEELTQSE
Sbjct: 1464 NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQQQNNAAAQEELTQSE 1523

Query: 74   IGEICDYFSRRVASEPYDASRVAS 3
            IGEICDYFSRRVASEPYDASRVAS
Sbjct: 1524 IGEICDYFSRRVASEPYDASRVAS 1547


>ref|XP_002882372.1| hypothetical protein ARALYDRAFT_477743 [Arabidopsis lyrata subsp.
            lyrata] gi|297328212|gb|EFH58631.1| hypothetical protein
            ARALYDRAFT_477743 [Arabidopsis lyrata subsp. lyrata]
          Length = 1702

 Score =  130 bits (326), Expect = 1e-28
 Identities = 70/83 (84%), Positives = 71/83 (85%)
 Frame = -3

Query: 251  NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFXXXXXXXXXXPAIAQEELTQSEI 72
            NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSV+RF           A AQEELTQSEI
Sbjct: 1425 NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVRRF-HHQQQQNGSSAAAQEELTQSEI 1483

Query: 71   GEICDYFSRRVASEPYDASRVAS 3
            GEICDYFSRRVASEPYDASRVAS
Sbjct: 1484 GEICDYFSRRVASEPYDASRVAS 1506


>ref|NP_187125.1| RNA polymerase II transcription mediator [Arabidopsis thaliana]
            gi|75207288|sp|Q9SR02.1|MED14_ARATH RecName:
            Full=Mediator of RNA polymerase II transcription subunit
            14; AltName: Full=Protein STRUWWELPETER; Short=AtSWP
            gi|6175174|gb|AAF04900.1|AC011437_15 hypothetical protein
            [Arabidopsis thaliana]
            gi|20068999|gb|AAM09647.1|AF466359_1 SWP1 [Arabidopsis
            thaliana] gi|23898273|emb|CAD53582.1| struwwelpeter 1
            protein [Arabidopsis thaliana]
            gi|332640609|gb|AEE74130.1| RNA polymerase II
            transcription mediator [Arabidopsis thaliana]
          Length = 1703

 Score =  130 bits (326), Expect = 1e-28
 Identities = 70/83 (84%), Positives = 71/83 (85%)
 Frame = -3

Query: 251  NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFXXXXXXXXXXPAIAQEELTQSEI 72
            NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSV+RF           A AQEELTQSEI
Sbjct: 1424 NLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVRRF-HHQAQQNGSSAAAQEELTQSEI 1482

Query: 71   GEICDYFSRRVASEPYDASRVAS 3
            GEICDYFSRRVASEPYDASRVAS
Sbjct: 1483 GEICDYFSRRVASEPYDASRVAS 1505


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