BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035036
         (631 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containi...   241   6e-76
ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|2...   241   1e-74
ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi...   221   2e-67
gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]        216   3e-63
ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containi...   216   7e-63

>ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
           gi|296082021|emb|CBI21026.3| unnamed protein product
           [Vitis vinifera]
          Length = 583

 Score =  241 bits (614), Expect(3) = 6e-76
 Identities = 116/159 (72%), Positives = 138/159 (86%)
 Frame = +1

Query: 154 VQKSVELRNALIDMFAKCGDVDKALSLFRIMNDRTIVTWTSVIVGLAMHGRGLEAVALFD 333
           V K+VEL NAL+DMFAKCGDVDKAL LFR M+ RTIV+WTSVIVGLAMHGRGLEAV+LF+
Sbjct: 242 VLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFE 301

Query: 334 EMIKVGVVPDDVAFIGVLTACTHSNLVSVGKRYFKLMKIKFDIVPKMEHYGCMVDLLGRA 513
           EM   G+VP+D+AFIG+L+AC+HS LV  G++YF  M  +F IVPK+EHYGCMVDLL RA
Sbjct: 302 EMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRA 361

Query: 514 GLVEEAVQFVEKMPIKPNSIIWRTLITACRAHGQLHLGE 630
           GLV EA++FVE+MPI+PN IIWRTLI+ACR HG+L LGE
Sbjct: 362 GLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGE 400



 Score = 67.8 bits (164), Expect(3) = 6e-76
 Identities = 29/41 (70%), Positives = 38/41 (92%)
 Frame = +3

Query: 30  KCRLLGVKPDEITLVSLLSACTDLGALELGKWVESFIEKEK 152
           K ++ GV PD++T+VS+LSACTDLGALELGKW+ES+IEKE+
Sbjct: 201 KMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKER 241



 Score = 23.1 bits (48), Expect(3) = 6e-76
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 2   STNAVELFRKMQIA 43
           S  AV LFRKMQIA
Sbjct: 192 SAGAVGLFRKMQIA 205



 Score = 73.9 bits (180), Expect(2) = 8e-13
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 1/149 (0%)
 Frame = +1

Query: 172 LRNALIDMFAKC-GDVDKALSLFRIMNDRTIVTWTSVIVGLAMHGRGLEAVALFDEMIKV 348
           ++N ++ M+  C G ++ A  LF  M     VTWT++I G A  G+   AV LF +M   
Sbjct: 146 VQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIA 205

Query: 349 GVVPDDVAFIGVLTACTHSNLVSVGKRYFKLMKIKFDIVPKMEHYGCMVDLLGRAGLVEE 528
           GV PDDV  + VL+ACT    + +GK + +    K  ++  +E    +VD+  + G V++
Sbjct: 206 GVCPDDVTMVSVLSACTDLGALELGK-WIESYIEKERVLKTVELSNALVDMFAKCGDVDK 264

Query: 529 AVQFVEKMPIKPNSIIWRTLITACRAHGQ 615
           A+     M  K   + W ++I     HG+
Sbjct: 265 ALGLFRNMS-KRTIVSWTSVIVGLAMHGR 292



 Score = 25.0 bits (53), Expect(2) = 8e-13
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 45  GVKPDEITLVSLLSACTDLGALELGKWVESFIEK 146
           G+ P++     +L AC  L  L LGK V   + K
Sbjct: 104 GISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVK 137


>ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|222854636|gb|EEE92183.1|
           predicted protein [Populus trichocarpa]
          Length = 487

 Score =  241 bits (616), Expect(2) = 1e-74
 Identities = 114/159 (71%), Positives = 137/159 (86%)
 Frame = +1

Query: 154 VQKSVELRNALIDMFAKCGDVDKALSLFRIMNDRTIVTWTSVIVGLAMHGRGLEAVALFD 333
           VQK+VEL NALIDMFAKCGDVDKA +LFR M +R IV+WTSVI GLAMHGRG+EAVA+F+
Sbjct: 146 VQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFE 205

Query: 334 EMIKVGVVPDDVAFIGVLTACTHSNLVSVGKRYFKLMKIKFDIVPKMEHYGCMVDLLGRA 513
           EM++ GV PDDV FIG+L+AC+HS LV  GKRYF  M+  F IVPK+EHYGCMVD+L RA
Sbjct: 206 EMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRA 265

Query: 514 GLVEEAVQFVEKMPIKPNSIIWRTLITACRAHGQLHLGE 630
           GLV+EA++FV++MPI PN ++WRTLI ACRAHG+L LGE
Sbjct: 266 GLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGE 304



 Score = 64.7 bits (156), Expect(2) = 1e-74
 Identities = 29/39 (74%), Positives = 36/39 (92%)
 Frame = +3

Query: 36  RLLGVKPDEITLVSLLSACTDLGALELGKWVESFIEKEK 152
           ++ GV PDEIT+VS+LSACT LGALELGKWVES++EKE+
Sbjct: 107 QIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKER 145



 Score = 69.7 bits (169), Expect(2) = 7e-12
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
 Frame = +1

Query: 166 VELRNALIDMFAKC----GDVDKALSLFRIMNDRTIVTWTSVIVGLAMHGRGLEAVALFD 333
           V ++N L+ M+  C    G ++ A  +F  M     V+W+++I G    GR  +A+ LF 
Sbjct: 45  VNVQNTLVHMYCCCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFR 104

Query: 334 EMIKVGVVPDDVAFIGVLTACTHSNLVSVGKRYFKLMKIKFDIVPKMEHYGCMVDLLGRA 513
           EM   GV PD++  + VL+ACT    + +GK + +    K  +   +E    ++D+  + 
Sbjct: 105 EMQIKGVCPDEITMVSVLSACTGLGALELGK-WVESYVEKERVQKNVELSNALIDMFAKC 163

Query: 514 GLVEEAVQFVEKMPIKPNSIIWRTLITACRAHGQ 615
           G V++A      M  + N + W ++I     HG+
Sbjct: 164 GDVDKATNLFRSMR-ERNIVSWTSVIGGLAMHGR 196



 Score = 26.2 bits (56), Expect(2) = 7e-12
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 54  PDEITLVSLLSACTDLGALELGKWVESFIEK 146
           P++ T   +L AC  +G L LGK V   + K
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMK 38


>ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
           gi|449529652|ref|XP_004171812.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  221 bits (564), Expect(2) = 2e-67
 Identities = 103/159 (64%), Positives = 127/159 (79%)
 Frame = +1

Query: 154 VQKSVELRNALIDMFAKCGDVDKALSLFRIMNDRTIVTWTSVIVGLAMHGRGLEAVALFD 333
           + K VE+ NALIDMFAKCGD+ KAL LFR MN++TIV+WTSVIVG+AMHGRG EA  LF+
Sbjct: 265 IHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFE 324

Query: 334 EMIKVGVVPDDVAFIGVLTACTHSNLVSVGKRYFKLMKIKFDIVPKMEHYGCMVDLLGRA 513
           EM   GV PDDVAFIG+L+AC+HS LV  G+ YF  M  K+ +VPK+EHYGCMVD+  R 
Sbjct: 325 EMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRT 384

Query: 514 GLVEEAVQFVEKMPIKPNSIIWRTLITACRAHGQLHLGE 630
           GLV+EA++FV  MPI+PN +I RTL++ACR HG+  LGE
Sbjct: 385 GLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGE 423



 Score = 60.5 bits (145), Expect(2) = 2e-67
 Identities = 26/35 (74%), Positives = 33/35 (94%)
 Frame = +3

Query: 48  VKPDEITLVSLLSACTDLGALELGKWVESFIEKEK 152
           V PDEIT+VS+LSACTDLGALELGKW+E++IE+ +
Sbjct: 230 VCPDEITMVSMLSACTDLGALELGKWIEAYIERHE 264



 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
 Frame = +1

Query: 166 VELRNALIDMFAKC-GDVDKALSLFRIMNDRTIVTWTSVIVGLAMHGRGLEAVALFDEMI 342
           + ++N ++ M++ C G ++ A  +F  M     VTW+++I G A  GR  EAVALF EM 
Sbjct: 167 IHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQ 226

Query: 343 KVGVVPDDVAFIGVLTACTHSNLVSVGKRYFKLMKIKFDIVPKMEHYGCMVDLLGRAGLV 522
              V PD++  + +L+ACT    + +GK + +    + +I   +E    ++D+  + G +
Sbjct: 227 MAEVCPDEITMVSMLSACTDLGALELGK-WIEAYIERHEIHKPVEVSNALIDMFAKCGDI 285

Query: 523 EEAVQFVEKMPIKPNSIIWRTLITACRAHGQ 615
            +A++    M  K   + W ++I     HG+
Sbjct: 286 SKALKLFRAMNEK-TIVSWTSVIVGMAMHGR 315


>gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  216 bits (549), Expect(2) = 3e-63
 Identities = 103/159 (64%), Positives = 128/159 (80%)
 Frame = +1

Query: 154 VQKSVELRNALIDMFAKCGDVDKALSLFRIMNDRTIVTWTSVIVGLAMHGRGLEAVALFD 333
           + KSV L NALID  AKCGD+D A+++F+ M +RTIV+WTSVI  LAM GRG EAVA+F+
Sbjct: 278 IGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFE 337

Query: 334 EMIKVGVVPDDVAFIGVLTACTHSNLVSVGKRYFKLMKIKFDIVPKMEHYGCMVDLLGRA 513
           EM   GV PDDVAFIGVLTAC+H+ +V  G  YF+ M++ + I PK+EHYGCMVD+ GRA
Sbjct: 338 EMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRA 397

Query: 514 GLVEEAVQFVEKMPIKPNSIIWRTLITACRAHGQLHLGE 630
           G+VE A++FV KMP+KPN IIWRTL+ ACRAHG+L LGE
Sbjct: 398 GMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGE 436



 Score = 52.4 bits (124), Expect(2) = 3e-63
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +3

Query: 45  GVKPDEITLVSLLSACTDLGALELGKWVESFIEKE 149
           GV+PDE+T++ +L+A  DLGALEL +WV  F+EKE
Sbjct: 242 GVRPDEVTMIGVLAAAADLGALELARWVGRFVEKE 276


>ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  216 bits (551), Expect(2) = 7e-63
 Identities = 102/159 (64%), Positives = 127/159 (79%)
 Frame = +1

Query: 154 VQKSVELRNALIDMFAKCGDVDKALSLFRIMNDRTIVTWTSVIVGLAMHGRGLEAVALFD 333
           + KSV L NALID  AKCGDVD A+++F  M +RT+V+WTSVI  LAM GRG EAV +F+
Sbjct: 270 IGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFE 329

Query: 334 EMIKVGVVPDDVAFIGVLTACTHSNLVSVGKRYFKLMKIKFDIVPKMEHYGCMVDLLGRA 513
           EM  VGV+PDDVAFIGVLTAC+H+ +V  G+ YF  MK ++ I PK+EHYGCMVD+ GRA
Sbjct: 330 EMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRA 389

Query: 514 GLVEEAVQFVEKMPIKPNSIIWRTLITACRAHGQLHLGE 630
           G+VE+ ++FV  MP+KPN IIWRTL+ ACRAHG+L LGE
Sbjct: 390 GMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGE 428



 Score = 50.1 bits (118), Expect(2) = 7e-63
 Identities = 20/35 (57%), Positives = 29/35 (82%)
 Frame = +3

Query: 45  GVKPDEITLVSLLSACTDLGALELGKWVESFIEKE 149
           GV+PDE+T++ +L+A  DLGALEL +WV  F+E+E
Sbjct: 234 GVRPDEVTVIGVLAAAADLGALELTRWVGRFVERE 268