BLASTX nr result

ID: Bupleurum21_contig00035026 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00035026
         (313 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37733.3| unnamed protein product [Vitis vinifera]              142   4e-32
ref|XP_002279899.1| PREDICTED: glutamate receptor 3.2 [Vitis vin...   142   4e-32
ref|XP_002520606.1| glutamate receptor 3 plant, putative [Ricinu...   134   6e-30
ref|XP_002313575.1| glutamate-gated kainate-type ion channel rec...   131   5e-29
ref|XP_004161019.1| PREDICTED: glutamate receptor 3.2-like [Cucu...   125   4e-27

>emb|CBI37733.3| unnamed protein product [Vitis vinifera]
          Length = 1147

 Score =  142 bits (357), Expect = 4e-32
 Identities = 71/102 (69%), Positives = 83/102 (81%)
 Frame = -3

Query: 308 VESYVVDSAKPGVLNIGAIFTLSSINGGVAKIAMDAAIQDVNSDPSILKGLRLNLSLHDS 129
           +  Y      P V+NIGAIFT S+ING VAKIAM AA QDVNSDPSIL G +L ++LHDS
Sbjct: 244 IRGYTEGVLNPEVVNIGAIFTFSTINGKVAKIAMKAAEQDVNSDPSILGGRKLAITLHDS 303

Query: 128 NYSSFMSIIGALRFMEIDTVAILGPQFSVMAHILSHLANELH 3
           NYS F+SI+GAL+FME DTVAI+GPQ +VMAH+LSHLANELH
Sbjct: 304 NYSGFLSIVGALQFMESDTVAIIGPQSAVMAHVLSHLANELH 345


>ref|XP_002279899.1| PREDICTED: glutamate receptor 3.2 [Vitis vinifera]
          Length = 917

 Score =  142 bits (357), Expect = 4e-32
 Identities = 71/102 (69%), Positives = 83/102 (81%)
 Frame = -3

Query: 308 VESYVVDSAKPGVLNIGAIFTLSSINGGVAKIAMDAAIQDVNSDPSILKGLRLNLSLHDS 129
           +  Y      P V+NIGAIFT S+ING VAKIAM AA QDVNSDPSIL G +L ++LHDS
Sbjct: 14  IRGYTEGVLNPEVVNIGAIFTFSTINGKVAKIAMKAAEQDVNSDPSILGGRKLAITLHDS 73

Query: 128 NYSSFMSIIGALRFMEIDTVAILGPQFSVMAHILSHLANELH 3
           NYS F+SI+GAL+FME DTVAI+GPQ +VMAH+LSHLANELH
Sbjct: 74  NYSGFLSIVGALQFMESDTVAIIGPQSAVMAHVLSHLANELH 115


>ref|XP_002520606.1| glutamate receptor 3 plant, putative [Ricinus communis]
           gi|223540205|gb|EEF41779.1| glutamate receptor 3 plant,
           putative [Ricinus communis]
          Length = 924

 Score =  134 bits (338), Expect = 6e-30
 Identities = 64/92 (69%), Positives = 79/92 (85%)
 Frame = -3

Query: 278 PGVLNIGAIFTLSSINGGVAKIAMDAAIQDVNSDPSILKGLRLNLSLHDSNYSSFMSIIG 99
           PGV+N+GAIFT ++ING VA+IAM AA  D+NSDPSIL G + + ++HDSN+S F+ IIG
Sbjct: 23  PGVINVGAIFTFNTINGKVARIAMKAAEDDINSDPSILGGWKFSTTMHDSNFSGFLGIIG 82

Query: 98  ALRFMEIDTVAILGPQFSVMAHILSHLANELH 3
           AL+FME DTVAILGPQ +VMAH+LSHLANELH
Sbjct: 83  ALQFMETDTVAILGPQNAVMAHVLSHLANELH 114


>ref|XP_002313575.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222849983|gb|EEE87530.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 900

 Score =  131 bits (330), Expect = 5e-29
 Identities = 61/90 (67%), Positives = 79/90 (87%)
 Frame = -3

Query: 275 GVLNIGAIFTLSSINGGVAKIAMDAAIQDVNSDPSILKGLRLNLSLHDSNYSSFMSIIGA 96
           G +N+GAIFT SSING VAKIAM+AA  D+NSDPS+L G +L++++HDSN+S F+ IIGA
Sbjct: 26  GTVNVGAIFTFSSINGRVAKIAMEAAEDDINSDPSLLGGRKLSINMHDSNFSGFLGIIGA 85

Query: 95  LRFMEIDTVAILGPQFSVMAHILSHLANEL 6
           L+F+E DTVA++GPQ +VMAH+LSHLANEL
Sbjct: 86  LQFLETDTVAVIGPQTAVMAHVLSHLANEL 115


>ref|XP_004161019.1| PREDICTED: glutamate receptor 3.2-like [Cucumis sativus]
          Length = 644

 Score =  125 bits (314), Expect = 4e-27
 Identities = 59/95 (62%), Positives = 81/95 (85%)
 Frame = -3

Query: 287 SAKPGVLNIGAIFTLSSINGGVAKIAMDAAIQDVNSDPSILKGLRLNLSLHDSNYSSFMS 108
           S++  V+ +GAIF+LSS+NG V+KIA++AA +DVNSDPS+L G +L++S+HD+NYS F+ 
Sbjct: 40  SSRNEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLG 99

Query: 107 IIGALRFMEIDTVAILGPQFSVMAHILSHLANELH 3
           I GA+++M  DTVAILGP+ S MAHILSHL+NELH
Sbjct: 100 ITGAMKYMVSDTVAILGPEDSTMAHILSHLSNELH 134


Top