BLASTX nr result
ID: Bupleurum21_contig00035000
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00035000
(785 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana] 268 1e-69
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc... 254 1e-65
gb|AAY99339.1| pol-polyprotein [Silene latifolia] 254 1e-65
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi... 254 2e-65
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc... 253 4e-65
>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
Length = 1838
Score = 268 bits (685), Expect = 1e-69
Identities = 133/236 (56%), Positives = 165/236 (69%), Gaps = 1/236 (0%)
Frame = -1
Query: 707 TEEVVLSSDKPDRKVTIGKAIPPAVKEEIIQLLREFRDVFAWGPEDMPGISKDIAEHKLN 528
TE V + P R V +G I P+++ E+I LL+ FAW EDM GI I H+LN
Sbjct: 758 TEMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELN 817
Query: 527 VDPTFKPVKQKKRNFAPERQKVIEEEVKKLLDAKFIEKVQYPDWLXXXXXXXXXNGKWRM 348
VDPTFKPVKQK+R PER + + EEV+KLL A I +V+YP+WL NGKWR+
Sbjct: 818 VDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRV 877
Query: 347 CVDYTDLNKACRKDHYPLPNIDQLIDATAGYSMLSFLDAFSGYHQIAMAKDDVPKTSFIT 168
CVDYTDLNKAC KD YPLP+ID+L++AT+G +LSF+DAFSGY+QI M KDD KTSF+T
Sbjct: 878 CVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVT 937
Query: 167 HNGTYAYIKMPFGLLNAGADYQRMINKVFEKQIGRNMECYVDDMIVKS-SDKDHVQ 3
GTY Y M FGL NAGA YQR +NK+ QIGR +E Y+DDM+VKS +DHV+
Sbjct: 938 DRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVE 993
>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1980
Score = 254 bits (649), Expect = 1e-65
Identities = 120/239 (50%), Positives = 169/239 (70%)
Frame = -1
Query: 740 LTKPIAETASETEEVVLSSDKPDRKVTIGKAIPPAVKEEIIQLLREFRDVFAWGPEDMPG 561
+ KPI E +T++V L P + + IG+ + ++EEI+++++E VFAW P+++ G
Sbjct: 912 IQKPIPE--GKTKKVQLDEHDPGKFILIGENLEKHIEEEILKVVKENMAVFAWSPDELQG 969
Query: 560 ISKDIAEHKLNVDPTFKPVKQKKRNFAPERQKVIEEEVKKLLDAKFIEKVQYPDWLXXXX 381
+ + + EH L + +KP KQK R + +RQ+ + E++KLL AK I +V +P+WL
Sbjct: 970 VDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPV 1029
Query: 380 XXXXXNGKWRMCVDYTDLNKACRKDHYPLPNIDQLIDATAGYSMLSFLDAFSGYHQIAMA 201
NGKWRMC+D+TDLNKAC KD +PLP IDQL+DATAG ++SFLDA+SGYHQ+ M
Sbjct: 1030 LVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMV 1089
Query: 200 KDDVPKTSFITHNGTYAYIKMPFGLLNAGADYQRMINKVFEKQIGRNMECYVDDMIVKS 24
K+D KTSFIT GTY +I+MPFGL NAGA + R+I KV KQ+GRN+E YVDD++VKS
Sbjct: 1090 KEDEEKTSFITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYVDDIVVKS 1148
>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
Length = 1307
Score = 254 bits (649), Expect = 1e-65
Identities = 128/237 (54%), Positives = 167/237 (70%), Gaps = 1/237 (0%)
Frame = -1
Query: 713 SETEEVVLSSDKPDRKVTIGKAIPPAVKEEIIQLLREFRDVFAWGPEDMPGISKDIAEHK 534
+ETE+V + P R VT+G + P + +++ LLR+ +DVFA+ +MPG+S+++ HK
Sbjct: 245 AETEQVEID---PGRTVTVGVGLEPKFRADLLDLLRKNKDVFAYSAAEMPGVSREVIVHK 301
Query: 533 LNVDPTFKPVKQKKRNFAPERQKVIEEEVKKLLDAKFIEKVQYPDWLXXXXXXXXXNGKW 354
LNV +PVKQK RN + E+ I+ EV KLL+A FI YP+WL +G W
Sbjct: 302 LNVLSNARPVKQKMRNSSAEKDDAIKAEVDKLLEAGFIMPCTYPEWLANVVMVKKSSGGW 361
Query: 353 RMCVDYTDLNKACRKDHYPLPNIDQLIDATAGYSMLSFLDAFSGYHQIAMAKDDVPKTSF 174
RMCVD+T+LNKAC KD YPLP ID LIDATA Y+MLS LDAFSGYHQ+ MA++DV K +F
Sbjct: 362 RMCVDFTNLNKACPKDCYPLPRIDSLIDATASYTMLSLLDAFSGYHQVFMAEEDVLKCAF 421
Query: 173 ITHNGTYAYIKMPFGLLNAGADYQRMINKVFEKQIGRNMECYVDDMIVKS-SDKDHV 6
IT +GTY Y M FGL NAGA Y R+++KVF+ Q GRN+E YVDD IVKS SD +H+
Sbjct: 422 ITIHGTYMYKMMSFGLKNAGATYTRLVDKVFQDQKGRNIEAYVDDAIVKSKSDSEHL 478
>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1787
Score = 254 bits (648), Expect = 2e-65
Identities = 121/226 (53%), Positives = 159/226 (70%)
Frame = -1
Query: 701 EVVLSSDKPDRKVTIGKAIPPAVKEEIIQLLREFRDVFAWGPEDMPGISKDIAEHKLNVD 522
+V + P R V I +P ++ E++ LR+ FAW EDMPGI + H+LNVD
Sbjct: 718 QVNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVD 777
Query: 521 PTFKPVKQKKRNFAPERQKVIEEEVKKLLDAKFIEKVQYPDWLXXXXXXXXXNGKWRMCV 342
PT+KP+KQK+R P+R K + EEVKKLLDA I +V+YPDWL NGKWR+C+
Sbjct: 778 PTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCI 837
Query: 341 DYTDLNKACRKDHYPLPNIDQLIDATAGYSMLSFLDAFSGYHQIAMAKDDVPKTSFITHN 162
D+TDLNKAC KD +PLP+ID+L++ATAG +LSF+DAFSGY+QI M ++D KT FIT
Sbjct: 838 DFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQ 897
Query: 161 GTYAYIKMPFGLLNAGADYQRMINKVFEKQIGRNMECYVDDMIVKS 24
GTY Y MPFGL NAGA Y R++N++F Q+ +ME Y+DDM+VKS
Sbjct: 898 GTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKS 943
>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1889
Score = 253 bits (645), Expect = 4e-65
Identities = 119/239 (49%), Positives = 169/239 (70%)
Frame = -1
Query: 740 LTKPIAETASETEEVVLSSDKPDRKVTIGKAIPPAVKEEIIQLLREFRDVFAWGPEDMPG 561
+ KPI E +T++V L P + + IG+ + ++EEI+++++E VFAW P+++ G
Sbjct: 912 IQKPIPE--GKTKKVQLDEHDPGKFILIGENLEKHIEEEILKVVKENMAVFAWSPDELQG 969
Query: 560 ISKDIAEHKLNVDPTFKPVKQKKRNFAPERQKVIEEEVKKLLDAKFIEKVQYPDWLXXXX 381
+ + + EH L + +KP KQK R + +RQ+ + E++KLL AK I +V +P+WL
Sbjct: 970 VDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPV 1029
Query: 380 XXXXXNGKWRMCVDYTDLNKACRKDHYPLPNIDQLIDATAGYSMLSFLDAFSGYHQIAMA 201
NGKWRMC+D+TDLNKAC KD +PLP IDQL+DATAG ++SFLDA+SGYHQ+ M
Sbjct: 1030 LVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMV 1089
Query: 200 KDDVPKTSFITHNGTYAYIKMPFGLLNAGADYQRMINKVFEKQIGRNMECYVDDMIVKS 24
K+D KTSFIT G+Y +I+MPFGL NAGA + R+I KV KQ+GRN+E YVDD++VKS
Sbjct: 1090 KEDEEKTSFITPFGSYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYVDDIVVKS 1148