BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034978
         (688 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containi...   341   7e-92
ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containi...   334   1e-89
ref|XP_002316152.1| predicted protein [Populus trichocarpa] gi|2...   332   4e-89
ref|NP_178067.1| pentatricopeptide repeat-containing protein [Ar...   328   8e-88
ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata] g...   328   8e-88

>ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Glycine max]
          Length = 752

 Score =  341 bits (875), Expect = 7e-92
 Identities = 166/229 (72%), Positives = 191/229 (83%)
 Frame = +2

Query: 2   PDMETQLDKLQFVPNMVHITQALKIVGDGDACLSLFRWAKRQAWYSPSDECYATLFDTLN 181
           P+++TQLDKLQFVPNM HI QALK+VGD DACLSLFRWAKRQAWY PSD+CY  LFD LN
Sbjct: 74  PELDTQLDKLQFVPNMTHIAQALKVVGDVDACLSLFRWAKRQAWYVPSDDCYVMLFDGLN 133

Query: 182 GSRDFDGIQSMFDELILDXXXXXXXXXXXXYNRVIQYLAKAEKLEVSFCCYKKVVECNFK 361
             RDF+GIQ +FDE++ D             NRVI+YLAKAEKLEVSFCC+KK++    K
Sbjct: 134 QKRDFEGIQLLFDEMVGDSADGVSLFAAC--NRVIRYLAKAEKLEVSFCCFKKILNAGCK 191

Query: 362 VDTQTYNCLITLFLNKGLPYKAFEIYENMDLGGCSLDGSTYELMIPSLAKSGRLDAASKL 541
           VDT+TYN LITLFLNKGLPYKAFE+YE+M+  GCSLDGSTYELMIP+LAKSGRLDAA KL
Sbjct: 192 VDTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSLDGSTYELMIPNLAKSGRLDAAFKL 251

Query: 542 FQEMKVKGLRPGYAVFSALVDSMGKAGRLDTSMKVYMEMQGFGLKPSAT 688
           FQEMKV+G RPG  VF++LVDSMGKAGRLD++MKVYMEM+G+G KP  T
Sbjct: 252 FQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGYKPPPT 300



 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 47/200 (23%), Positives = 86/200 (43%)
 Frame = +2

Query: 89  DACLSLFRWAKRQAWYSPSDECYATLFDTLNGSRDFDGIQSMFDELILDXXXXXXXXXXX 268
           DA   LF+  K +  + P    +A+L D++  +   D    ++ E+              
Sbjct: 246 DAAFKLFQEMKVRG-FRPGLNVFASLVDSMGKAGRLDSAMKVYMEM----RGYGYKPPPT 300

Query: 269 XYNRVIQYLAKAEKLEVSFCCYKKVVECNFKVDTQTYNCLITLFLNKGLPYKAFEIYENM 448
            Y  +I+   K+ KLE +   + ++    F+ +   Y  +I      G    A   + +M
Sbjct: 301 IYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMSTFLDM 360

Query: 449 DLGGCSLDGSTYELMIPSLAKSGRLDAASKLFQEMKVKGLRPGYAVFSALVDSMGKAGRL 628
           +  G     STY  ++   A SG++D A KL+  M   GLRPG + ++ L+  +     +
Sbjct: 361 EKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLANKKLV 420

Query: 629 DTSMKVYMEMQGFGLKPSAT 688
           D + K+ +EM+  G     T
Sbjct: 421 DVAAKILLEMKAMGYSVDVT 440


>ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Vitis vinifera]
          Length = 844

 Score =  334 bits (856), Expect = 1e-89
 Identities = 168/230 (73%), Positives = 188/230 (81%), Gaps = 1/230 (0%)
 Frame = +2

Query: 2   PDMETQLDKLQFVPNMVHITQALKIVGDGDACLSLFRWAKRQAWYSP-SDECYATLFDTL 178
           P++ETQLDKL FVPNM H+ QALKIV D DA LSLFRWAKRQ WYS  +DECYA LFD L
Sbjct: 161 PELETQLDKLHFVPNMSHVIQALKIVTDTDASLSLFRWAKRQPWYSMLNDECYALLFDRL 220

Query: 179 NGSRDFDGIQSMFDELILDXXXXXXXXXXXXYNRVIQYLAKAEKLEVSFCCYKKVVECNF 358
           N SRDFD IQS+FDE+I D             N+V++ LAKAEKLEV+FCC+KKV +   
Sbjct: 221 NQSRDFDAIQSLFDEMIRDSGDNNGVSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGC 280

Query: 359 KVDTQTYNCLITLFLNKGLPYKAFEIYENMDLGGCSLDGSTYELMIPSLAKSGRLDAASK 538
           K+DT TYN LITLFLNKGLPYKAFE+YE+M+  GC LDGSTYELMIPSLAKSGRLDAA K
Sbjct: 281 KIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFK 340

Query: 539 LFQEMKVKGLRPGYAVFSALVDSMGKAGRLDTSMKVYMEMQGFGLKPSAT 688
           LFQEMK K LRP + VF++LVDSMGKAGRLDTSMKVYMEMQGFGL+PSAT
Sbjct: 341 LFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSAT 390



 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 48/194 (24%), Positives = 89/194 (45%)
 Frame = +2

Query: 89  DACLSLFRWAKRQAWYSPSDECYATLFDTLNGSRDFDGIQSMFDELILDXXXXXXXXXXX 268
           DA   LF+  K +    PS   +A+L D++  +   D    ++ E+              
Sbjct: 336 DAAFKLFQEMKEKN-LRPSFLVFASLVDSMGKAGRLDTSMKVYMEM----QGFGLRPSAT 390

Query: 269 XYNRVIQYLAKAEKLEVSFCCYKKVVECNFKVDTQTYNCLITLFLNKGLPYKAFEIYENM 448
            Y  +I+   KA KLE +   + ++ +  F+ +   Y  ++      G    A  ++ +M
Sbjct: 391 MYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDM 450

Query: 449 DLGGCSLDGSTYELMIPSLAKSGRLDAASKLFQEMKVKGLRPGYAVFSALVDSMGKAGRL 628
           +  G     STY  ++   + SG++D+A KL+  M   GLRPG + ++AL+  +     +
Sbjct: 451 EKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLV 510

Query: 629 DTSMKVYMEMQGFG 670
           D + KV +EM+  G
Sbjct: 511 DVAAKVLLEMKAMG 524



 Score = 68.9 bits (167), Expect = 9e-10
 Identities = 37/133 (27%), Positives = 68/133 (51%)
 Frame = +2

Query: 281 VIQYLAKAEKLEVSFCCYKKVVECNFKVDTQTYNCLITLFLNKGLPYKAFEIYENMDLGG 460
           ++  + KA +L+ S   Y ++     +     Y  LI  F+  G    A  I++ M   G
Sbjct: 360 LVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAG 419

Query: 461 CSLDGSTYELMIPSLAKSGRLDAASKLFQEMKVKGLRPGYAVFSALVDSMGKAGRLDTSM 640
              +   Y +++ S AKSG+L+ A  +F +M+  G  P  + +S L++    +G++D++M
Sbjct: 420 FRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAM 479

Query: 641 KVYMEMQGFGLKP 679
           K+Y  M   GL+P
Sbjct: 480 KLYNSMTNAGLRP 492


>ref|XP_002316152.1| predicted protein [Populus trichocarpa] gi|222865192|gb|EEF02323.1|
           predicted protein [Populus trichocarpa]
          Length = 785

 Score =  332 bits (851), Expect = 4e-89
 Identities = 162/228 (71%), Positives = 185/228 (81%)
 Frame = +2

Query: 2   PDMETQLDKLQFVPNMVHITQALKIVGDGDACLSLFRWAKRQAWYSPSDECYATLFDTLN 181
           P++ETQLDKLQFVPNM H+ QALKI+ + DA LSLF+WAKRQ WY P+DECY  LFD LN
Sbjct: 107 PELETQLDKLQFVPNMTHVVQALKIINESDALLSLFKWAKRQTWYVPNDECYVMLFDGLN 166

Query: 182 GSRDFDGIQSMFDELILDXXXXXXXXXXXXYNRVIQYLAKAEKLEVSFCCYKKVVECNFK 361
            SRDFDGIQS+FDE++ D            YNRV++YLAKAEKLEVSFCC+KKV +   K
Sbjct: 167 QSRDFDGIQSLFDEMVCDSIKSATQFSA--YNRVLKYLAKAEKLEVSFCCFKKVQDSGCK 224

Query: 362 VDTQTYNCLITLFLNKGLPYKAFEIYENMDLGGCSLDGSTYELMIPSLAKSGRLDAASKL 541
           +DT+TYN L+ LFLNKGLPYKAFEIYE M+   CSLD STYELMIPSLAKSGRLDAA KL
Sbjct: 225 IDTETYNILMKLFLNKGLPYKAFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKL 284

Query: 542 FQEMKVKGLRPGYAVFSALVDSMGKAGRLDTSMKVYMEMQGFGLKPSA 685
           FQEMK +  RP   +FS+LVDSMGKAGRL+TSMKVYMEMQG GL+PSA
Sbjct: 285 FQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSA 332



 Score = 72.4 bits (176), Expect = 8e-11
 Identities = 39/136 (28%), Positives = 71/136 (52%)
 Frame = +2

Query: 272 YNRVIQYLAKAEKLEVSFCCYKKVVECNFKVDTQTYNCLITLFLNKGLPYKAFEIYENMD 451
           ++ ++  + KA +LE S   Y ++     +     Y  LI  +   G    A  +++ M 
Sbjct: 300 FSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMK 359

Query: 452 LGGCSLDGSTYELMIPSLAKSGRLDAASKLFQEMKVKGLRPGYAVFSALVDSMGKAGRLD 631
           + G   +   Y L+I S AKSG+LD A  +F++M+  G  P  + +S+L++    +G++D
Sbjct: 360 IAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVD 419

Query: 632 TSMKVYMEMQGFGLKP 679
            +MK+Y  M   GL+P
Sbjct: 420 AAMKLYNSMTNAGLRP 435



 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 48/194 (24%), Positives = 89/194 (45%)
 Frame = +2

Query: 89  DACLSLFRWAKRQAWYSPSDECYATLFDTLNGSRDFDGIQSMFDELILDXXXXXXXXXXX 268
           DA   LF+  K +  + PS   +++L D++  +   +    ++ E+              
Sbjct: 279 DAAFKLFQEMKERN-FRPSLGIFSSLVDSMGKAGRLETSMKVYMEM----QGLGLRPSAI 333

Query: 269 XYNRVIQYLAKAEKLEVSFCCYKKVVECNFKVDTQTYNCLITLFLNKGLPYKAFEIYENM 448
            Y  +I+   KA KL+ +   + ++    F+ +   Y  +I      G    A  I+ +M
Sbjct: 334 MYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDM 393

Query: 449 DLGGCSLDGSTYELMIPSLAKSGRLDAASKLFQEMKVKGLRPGYAVFSALVDSMGKAGRL 628
           +  G     STY  ++   A SG++DAA KL+  M   GLRPG + ++AL+  +     +
Sbjct: 394 EKAGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLSTYTALLTLLAHKKLV 453

Query: 629 DTSMKVYMEMQGFG 670
           D + K+ +EM+  G
Sbjct: 454 DVAAKILLEMKAMG 467


>ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
           DEFECTIVE 2217; Flags: Precursor
           gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis
           thaliana] gi|332198129|gb|AEE36250.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score =  328 bits (840), Expect = 8e-88
 Identities = 165/229 (72%), Positives = 188/229 (82%)
 Frame = +2

Query: 2   PDMETQLDKLQFVPNMVHITQALKIVGDGDACLSLFRWAKRQAWYSPSDECYATLFDTLN 181
           P++ETQLDKLQFVPNMVHITQ+LKIV + DA LSLFRWAK+Q WY PSDECY  LFD LN
Sbjct: 157 PELETQLDKLQFVPNMVHITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLN 216

Query: 182 GSRDFDGIQSMFDELILDXXXXXXXXXXXXYNRVIQYLAKAEKLEVSFCCYKKVVECNFK 361
             RDF GIQS+F+E++ D            YN+VIQYLAKAEKLEV+FCC+KK  E   K
Sbjct: 217 QGRDFVGIQSLFEEMVQDSSSHGDLSFNA-YNQVIQYLAKAEKLEVAFCCFKKAQESGCK 275

Query: 362 VDTQTYNCLITLFLNKGLPYKAFEIYENMDLGGCSLDGSTYELMIPSLAKSGRLDAASKL 541
           +DTQTYN L+ LFLNKGLPYKAFEIYE+M+     LDGSTYEL+IPSLAKSGRLDAA KL
Sbjct: 276 IDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKL 335

Query: 542 FQEMKVKGLRPGYAVFSALVDSMGKAGRLDTSMKVYMEMQGFGLKPSAT 688
           FQ+MK + LRP ++VFS+LVDSMGKAGRLDTSMKVYMEMQGFG +PSAT
Sbjct: 336 FQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSAT 384



 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 35/136 (25%), Positives = 70/136 (51%)
 Frame = +2

Query: 272 YNRVIQYLAKAEKLEVSFCCYKKVVECNFKVDTQTYNCLITLFLNKGLPYKAFEIYENMD 451
           ++ ++  + KA +L+ S   Y ++     +     +  LI  +   G    A  +++ M 
Sbjct: 351 FSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMK 410

Query: 452 LGGCSLDGSTYELMIPSLAKSGRLDAASKLFQEMKVKGLRPGYAVFSALVDSMGKAGRLD 631
             G   +   Y ++I S AKSG+L+ A  +F++M+  G  P  + +S L++    +G++D
Sbjct: 411 KSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVD 470

Query: 632 TSMKVYMEMQGFGLKP 679
           ++MK+Y  M   GL+P
Sbjct: 471 SAMKIYNSMTNAGLRP 486



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 48/205 (23%), Positives = 93/205 (45%)
 Frame = +2

Query: 56  ITQALKIVGDGDACLSLFRWAKRQAWYSPSDECYATLFDTLNGSRDFDGIQSMFDELILD 235
           I  +L   G  DA   LF+  K +    PS   +++L D++  +   D    ++ E+   
Sbjct: 319 IIPSLAKSGRLDAAFKLFQQMKERK-LRPSFSVFSSLVDSMGKAGRLDTSMKVYMEM--- 374

Query: 236 XXXXXXXXXXXXYNRVIQYLAKAEKLEVSFCCYKKVVECNFKVDTQTYNCLITLFLNKGL 415
                       +  +I   AKA KL+ +   + ++ +  F+ +   Y  +I      G 
Sbjct: 375 -QGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGK 433

Query: 416 PYKAFEIYENMDLGGCSLDGSTYELMIPSLAKSGRLDAASKLFQEMKVKGLRPGYAVFSA 595
              A  ++++M+  G     STY  ++   A SG++D+A K++  M   GLRPG + + +
Sbjct: 434 LEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYIS 493

Query: 596 LVDSMGKAGRLDTSMKVYMEMQGFG 670
           L+  +     +D + K+ +EM+  G
Sbjct: 494 LLTLLANKRLVDVAGKILLEMKAMG 518


>ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
           gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 832

 Score =  328 bits (840), Expect = 8e-88
 Identities = 165/229 (72%), Positives = 188/229 (82%)
 Frame = +2

Query: 2   PDMETQLDKLQFVPNMVHITQALKIVGDGDACLSLFRWAKRQAWYSPSDECYATLFDTLN 181
           P++ETQLDKLQFVPNMVHITQ+LKIV + DA LSLFRWAK+Q WY PSDECY  LFD LN
Sbjct: 153 PELETQLDKLQFVPNMVHITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLN 212

Query: 182 GSRDFDGIQSMFDELILDXXXXXXXXXXXXYNRVIQYLAKAEKLEVSFCCYKKVVECNFK 361
             RDF GIQS+F+E++ D            YN+VIQYLAKAEKLEV+FCC+KK  E   K
Sbjct: 213 QGRDFVGIQSLFEEMVQDSSSHGDLSFGA-YNQVIQYLAKAEKLEVAFCCFKKAQESGCK 271

Query: 362 VDTQTYNCLITLFLNKGLPYKAFEIYENMDLGGCSLDGSTYELMIPSLAKSGRLDAASKL 541
           +DTQTYN L+ LFLNKGLPYKAFEIYE+M+     LDGSTYEL+IPSLAKSGRLDAA KL
Sbjct: 272 IDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKL 331

Query: 542 FQEMKVKGLRPGYAVFSALVDSMGKAGRLDTSMKVYMEMQGFGLKPSAT 688
           FQ+MK + LRP ++VFS+LVDSMGKAGRLDTSMKVYMEMQGFG +PSAT
Sbjct: 332 FQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSAT 380



 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 35/136 (25%), Positives = 70/136 (51%)
 Frame = +2

Query: 272 YNRVIQYLAKAEKLEVSFCCYKKVVECNFKVDTQTYNCLITLFLNKGLPYKAFEIYENMD 451
           ++ ++  + KA +L+ S   Y ++     +     +  LI  +   G    A  +++ M 
Sbjct: 347 FSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMK 406

Query: 452 LGGCSLDGSTYELMIPSLAKSGRLDAASKLFQEMKVKGLRPGYAVFSALVDSMGKAGRLD 631
             G   +   Y ++I S AKSG+L+ A  +F++M+  G  P  + +S L++    +G++D
Sbjct: 407 KSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVD 466

Query: 632 TSMKVYMEMQGFGLKP 679
           ++MK+Y  M   GL+P
Sbjct: 467 SAMKIYNSMTNAGLRP 482



 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 48/205 (23%), Positives = 93/205 (45%)
 Frame = +2

Query: 56  ITQALKIVGDGDACLSLFRWAKRQAWYSPSDECYATLFDTLNGSRDFDGIQSMFDELILD 235
           I  +L   G  DA   LF+  K +    PS   +++L D++  +   D    ++ E+   
Sbjct: 315 IIPSLAKSGRLDAAFKLFQQMKERK-LRPSFSVFSSLVDSMGKAGRLDTSMKVYMEM--- 370

Query: 236 XXXXXXXXXXXXYNRVIQYLAKAEKLEVSFCCYKKVVECNFKVDTQTYNCLITLFLNKGL 415
                       +  +I   AKA KL+ +   + ++ +  F+ +   Y  +I      G 
Sbjct: 371 -QGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGK 429

Query: 416 PYKAFEIYENMDLGGCSLDGSTYELMIPSLAKSGRLDAASKLFQEMKVKGLRPGYAVFSA 595
              A  ++++M+  G     STY  ++   A SG++D+A K++  M   GLRPG + + +
Sbjct: 430 LEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYIS 489

Query: 596 LVDSMGKAGRLDTSMKVYMEMQGFG 670
           L+  +     +D + K+ +EM+  G
Sbjct: 490 LLTLLANKRLVDVAGKILLEMKAMG 514