BLASTX nr result

ID: Bupleurum21_contig00034938 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034938
         (530 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38416.3| unnamed protein product [Vitis vinifera]              152   2e-35
emb|CAN80033.1| hypothetical protein VITISV_007071 [Vitis vinifera]   151   5e-35
ref|XP_002521705.1| poly(A) polymerase, putative [Ricinus commun...   142   2e-32
ref|XP_002307206.1| predicted protein [Populus trichocarpa] gi|2...   140   2e-31
ref|XP_003516528.1| PREDICTED: uncharacterized protein LOC100794...   135   3e-30

>emb|CBI38416.3| unnamed protein product [Vitis vinifera]
          Length = 262

 Score =  152 bits (385), Expect = 2e-35
 Identities = 75/128 (58%), Positives = 97/128 (75%)
 Frame = -1

Query: 386 ISQCKELDSRTLGIRWSMISEPSWIILKLLQKQGFKAYLVGGCVRDLILKRKPKDFDIIT 207
           +S+ K+LDSRT GI  SMIS PSW++LKLLQ++GF+AYLVGGCVRDLIL + PKDFD+IT
Sbjct: 1   MSKWKKLDSRTFGITRSMISSPSWVVLKLLQREGFEAYLVGGCVRDLILNKTPKDFDVIT 60

Query: 206 TAELNKVKRLFYHAQIIGRRYPICIVHIKNTVIEVSSFKTEAPGSIEKKTFLTTRMLSKY 27
           TA+L ++K+ F  AQI+GRR+PIC VH+K +VIEVSSF+T A    EK+    ++M S  
Sbjct: 61  TAKLKQIKKRFRRAQIVGRRFPICRVHVKGSVIEVSSFETVAKHGEEKEKVSFSQMPSGC 120

Query: 26  SRLDHVLW 3
              D   W
Sbjct: 121 DESDFNRW 128


>emb|CAN80033.1| hypothetical protein VITISV_007071 [Vitis vinifera]
          Length = 693

 Score =  151 bits (382), Expect = 5e-35
 Identities = 75/128 (58%), Positives = 96/128 (75%)
 Frame = -1

Query: 386 ISQCKELDSRTLGIRWSMISEPSWIILKLLQKQGFKAYLVGGCVRDLILKRKPKDFDIIT 207
           +S+ K+LDSRT GI  SMIS PSW +LKLLQ++GF+AYLVGGCVRDLIL + PKDFD+IT
Sbjct: 1   MSKWKKLDSRTFGITRSMISSPSWFVLKLLQREGFEAYLVGGCVRDLILNKTPKDFDVIT 60

Query: 206 TAELNKVKRLFYHAQIIGRRYPICIVHIKNTVIEVSSFKTEAPGSIEKKTFLTTRMLSKY 27
           TA+L ++K+ F  AQI+GRR+PIC VH+K +VIEVSSF+T A    EK+    ++M S  
Sbjct: 61  TAKLKQIKKRFRRAQIVGRRFPICRVHVKGSVIEVSSFETVAKHGEEKEKVSFSQMPSGC 120

Query: 26  SRLDHVLW 3
              D   W
Sbjct: 121 DESDFNRW 128


>ref|XP_002521705.1| poly(A) polymerase, putative [Ricinus communis]
           gi|223539096|gb|EEF40692.1| poly(A) polymerase, putative
           [Ricinus communis]
          Length = 675

 Score =  142 bits (359), Expect = 2e-32
 Identities = 73/175 (41%), Positives = 111/175 (63%)
 Frame = -1

Query: 527 SLKRFSHSIVERGAEDPFSVIMKSKSLHKNAESFSKTESNPGVGKFDISQCKELDSRTLG 348
           +L+RF+HS++E+    P  +   SK                     DIS+ K++++  +G
Sbjct: 20  TLQRFNHSLIEQTPLYPRMISSDSKDQQSTV--------------IDISKWKKINASAVG 65

Query: 347 IRWSMISEPSWIILKLLQKQGFKAYLVGGCVRDLILKRKPKDFDIITTAELNKVKRLFYH 168
           I+ SMI    W++LK+L  +GF+AYLVGGCVRDL+L R PKDFD+ITTA+L +VK+ F+ 
Sbjct: 66  IKRSMIPPSPWLVLKILHNKGFEAYLVGGCVRDLLLNRIPKDFDVITTAKLKQVKKQFHR 125

Query: 167 AQIIGRRYPICIVHIKNTVIEVSSFKTEAPGSIEKKTFLTTRMLSKYSRLDHVLW 3
            +I+GRR+PIC VH+K +V+EVSSF+T A  +  K+  L ++  S  +  D + W
Sbjct: 126 CEIVGRRFPICRVHVKGSVVEVSSFETVAQHNEGKEEVLISQKPSGCNGRDFIRW 180


>ref|XP_002307206.1| predicted protein [Populus trichocarpa] gi|222856655|gb|EEE94202.1|
           predicted protein [Populus trichocarpa]
          Length = 458

 Score =  140 bits (352), Expect = 2e-31
 Identities = 68/129 (52%), Positives = 93/129 (72%)
 Frame = -1

Query: 389 DISQCKELDSRTLGIRWSMISEPSWIILKLLQKQGFKAYLVGGCVRDLILKRKPKDFDII 210
           D S+ +++++R  GI  SMI +  W +LKLL+  GF+AYLVGGCVRDL+L R PKDFD+I
Sbjct: 2   DRSKWRKVNARYHGITRSMIPDAPWTVLKLLRVGGFEAYLVGGCVRDLLLNRVPKDFDVI 61

Query: 209 TTAELNKVKRLFYHAQIIGRRYPICIVHIKNTVIEVSSFKTEAPGSIEKKTFLTTRMLSK 30
           TTA L ++K+ F+ A I+GRR+PICIVH+K +VIEVSSF+T A    EK+  L ++M   
Sbjct: 62  TTANLQQIKKKFHRAHIVGRRFPICIVHVKGSVIEVSSFETSAQQCQEKEKVLLSQMRRS 121

Query: 29  YSRLDHVLW 3
               D +LW
Sbjct: 122 CDEKDFLLW 130


>ref|XP_003516528.1| PREDICTED: uncharacterized protein LOC100794882 [Glycine max]
          Length = 714

 Score =  135 bits (341), Expect = 3e-30
 Identities = 67/119 (56%), Positives = 92/119 (77%), Gaps = 3/119 (2%)
 Frame = -1

Query: 398 GKFDISQCKELDSRTLGIRWSMISEPSWIILKLLQKQGFKAYLVGGCVRDLILKRKPKDF 219
           G+ D+S+ K LD+  LGI  SMIS PS  +LKLL+++GF++YLVGGCVRDL+L R PKDF
Sbjct: 49  GRIDVSKWKTLDAEELGITSSMISYPSQFVLKLLRRKGFESYLVGGCVRDLLLNRTPKDF 108

Query: 218 DIITTAELNKVKRLF---YHAQIIGRRYPICIVHIKNTVIEVSSFKTEAPGSIEKKTFL 51
           D+ITTA+L +V+  F     A+++GRR+PIC+VHIK +V+EV+SF+T A  S  K+ FL
Sbjct: 109 DVITTAKLMEVRAQFRGLARAEVVGRRFPICLVHIKGSVVEVTSFETVARTSNRKEQFL 167


Top