BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034879
         (623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK00427.2| Putative copia-type pol polyprotein [Oryza sativa...    57   3e-06
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa Japonica Group]          57   4e-06

>gb|AAK00427.2| Putative copia-type pol polyprotein [Oryza sativa Japonica Group]
           gi|31429784|gb|AAP51786.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 1377

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
 Frame = +3

Query: 105 EEEEALLAKRFSRFRMRRDKGNPKWKKEAAGDGYKPSGDKSNMKCFKCNKMGHFANDCRV 284
           EEE ALLA+RF+    RR K   +          +P+   SN++CF+C + GHFA  C  
Sbjct: 136 EEEIALLARRFNDLLGRR-KERGRGSNSNRRRNRRPNKTLSNLRCFECGEKGHFALKCPS 194

Query: 285 KVDSNARGKSSEDYYKNKYFELLKSQKGGRALVAEGKDWADSDDEEPE------------ 428
           K D     KSS+   K+  ++L+K  K   +  +E +D  D+  ++ +            
Sbjct: 195 KDDDG--DKSSKK--KSGGYKLMKKLKNSASSGSEEEDGDDTSSKKKKMAVVAIKEAPSL 250

Query: 429 GSNLALMAYESSAFNSIPQVQHTNTYESTVVKTLTTEIKDLYATLRNTVSKNEKLK 596
            + L LMA  SS   S+   +  +  +      L +  ++LYA     + K + LK
Sbjct: 251 FAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDELVSMFEELYAYSEKEIVKFKALK 306


>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa Japonica Group]
          Length = 1539

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 29/193 (15%)
 Frame = +3

Query: 105 EEEEALLAKRFSRFRMRRDKGNPKWKKEAAGDGYKPSGDKSNMKCFKCNKMGHFANDCRV 284
           EEE ALLA+RF+ F  RR K   K          +P+   SN++CF+C + GHFA+ C  
Sbjct: 233 EEEIALLARRFNDFLGRR-KERGKGSNSNRRRNKRPNKTLSNLRCFECGEKGHFASKCPS 291

Query: 285 KVDSNARGKSSEDYYKNKYFELLKSQKGGRALVAEGKDW-------ADSDDEEPEGSN-- 437
           K D    G  S       Y  + K +K G+ + A   +W       A S  +E +G +  
Sbjct: 292 KDDD---GDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEEDGDDAS 348

Query: 438 --------------------LALMAYESSAFNSIPQVQHTNTYESTVVKTLTTEIKDLYA 557
                               L LMA  SS   S+   +  +  +      L +  ++L+A
Sbjct: 349 SKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDISYDELVSMFEELHA 408

Query: 558 TLRNTVSKNEKLK 596
                + K + LK
Sbjct: 409 YSEKEIVKFKALK 421