BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034855
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               64   1e-08
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    63   2e-08
gb|ABK28243.1| unknown [Arabidopsis thaliana]                          63   2e-08
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali...    63   2e-08
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    59   4e-07

>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 44/113 (38%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
 Frame = -1

Query: 340  NRLSTKDRLSRFGMPINPICVLCNADQESAAHLITQCRFSLSILA--------ESPCQLS 185
            NRL T+DRL R+G  I P CVLCN   ES  HL  +C+FS  I +          P Q  
Sbjct: 1009 NRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRCQFSSEIWSFFMRALNLNPPPQFM 1068

Query: 184  HSWDDYLRGNILTSPATNIQKQLTYLFVSVAFYHIWHERNMQIHQPA--SAHL 32
            H     L   +  S   NI   +T L    + Y IW ERN++IH  +   AHL
Sbjct: 1069 HC----LLWTLTASRDRNI-TLITKLLFHASVYFIWRERNLRIHSNSVRPAHL 1116


>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 48/123 (39%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
 Frame = -1

Query: 340 NRLSTKDRLSRFGMPINPICVLCNADQESAAHLITQCRFS--------LSILAESPCQLS 185
           NRL T+DRL  +G+ I   C+LCNA  +S AHL  +C+FS         S     P QL 
Sbjct: 152 NRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLM 211

Query: 184 HSWDDYLRGNILTSPATNIQKQLTYLFVSVAF----YHIWHERNMQIHQPASAHLRSTAS 17
               D L  N L SP+   +++   L + +AF    Y IW ERN ++H   S   RST S
Sbjct: 212 ----DCL--NWLLSPS---REKNICLIIRLAFHSCVYAIWRERNQRLHSGVS---RSTES 259

Query: 16  ILQ 8
           IL+
Sbjct: 260 ILK 262


>gb|ABK28243.1| unknown [Arabidopsis thaliana]
          Length = 297

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 48/123 (39%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
 Frame = -1

Query: 340 NRLSTKDRLSRFGMPINPICVLCNADQESAAHLITQCRFS--------LSILAESPCQLS 185
           NRL T+DRL  +G+ I   C+LCNA  +S AHL  +C+FS         S     P QL 
Sbjct: 152 NRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLM 211

Query: 184 HSWDDYLRGNILTSPATNIQKQLTYLFVSVAF----YHIWHERNMQIHQPASAHLRSTAS 17
               D L  N L SP+   +++   L + +AF    Y IW ERN ++H   S   RST S
Sbjct: 212 ----DCL--NWLLSPS---REKNICLIIRLAFHSCVYAIWRERNQRLHSGVS---RSTES 259

Query: 16  ILQ 8
           IL+
Sbjct: 260 ILK 262


>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
          Length = 296

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 48/123 (39%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
 Frame = -1

Query: 340 NRLSTKDRLSRFGMPINPICVLCNADQESAAHLITQCRFS--------LSILAESPCQLS 185
           NRL T+DRL  +G+ I   C+LCNA  +S AHL  +C+FS         S     P QL 
Sbjct: 152 NRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLM 211

Query: 184 HSWDDYLRGNILTSPATNIQKQLTYLFVSVAF----YHIWHERNMQIHQPASAHLRSTAS 17
               D L  N L SP+   +++   L + +AF    Y IW ERN ++H   S   RST S
Sbjct: 212 ----DCL--NWLLSPS---REKNICLIIRLAFHSCVYAIWRERNQRLHSGVS---RSTES 259

Query: 16  ILQ 8
           IL+
Sbjct: 260 ILK 262


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
 Frame = -1

Query: 337 RLSTKDRLSRFGMPINPICVLCNADQESAAHLITQCRFSLSI----LAESPCQLSHSWDD 170
           RL T+DRL+++G+ I  +CVLCN   E+  HL  QC+FS  I    +  +     H +  
Sbjct: 178 RLHTRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQCQFSNEIWSFFMIRAGMTPPHLFGP 237

Query: 169 YLRGNILTSPATNIQKQLTYLFVSVAFYHIWHERNMQIHQPASAHLRSTASILQ 8
            L      S + N+   +  LF   + Y IW ERN +IH   + H R+  +I++
Sbjct: 238 ILLWLKSASSSKNLSLIIKLLF-QASVYLIWRERNCRIH---TTHSRTPPTIIK 287