BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034791
         (742 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             348   9e-94
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...   345   7e-93
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             342   6e-92
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   340   1e-91
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   335   8e-90

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  348 bits (892), Expect = 9e-94
 Identities = 165/244 (67%), Positives = 199/244 (81%)
 Frame = -1

Query: 733  RQKRRAISGERATALKEEVDRLLKAGLIKESFYPTWLANPVLVKKPNGKWRTCVDFTDLN 554
            +QKRR +  ERA A+ EEV++LLKAG I E  YP WLANPV+VKK NGKWR CVD+TDLN
Sbjct: 826  KQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLN 885

Query: 553  KACPKDSFPLPRIDQLVDATAGHALLSFMDAYSGYNQIPMHEADQEHTSFITDRGLYCYI 374
            KACPKDS+PLP ID+LV+AT+G+ LLSFMDA+SGYNQI MH+ DQE TSF+TDRG YCY 
Sbjct: 886  KACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYK 945

Query: 373  GMPFGLVNAGATYQRLVNMMFHEQIGKFMEVYVDDMLVKSKKAEDHIKHLGEMFTILRRF 194
             M FGL NAGATYQR VN M  +QIG+ +EVY+DDMLVKS K EDH++HL + F +L  +
Sbjct: 946  VMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTY 1005

Query: 193  RMKLNPQKCVFGVESGKFLGFIVNHRGIEANPAKIRALIEMRSPRTIKEVQSLTGRVAAL 14
             MKLNP KC FGV SG+FLG++V  RGIEANP +IRA++E+ SPR  +EVQ LTGR+AAL
Sbjct: 1006 GMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAAL 1065

Query: 13   NRFV 2
            NRF+
Sbjct: 1066 NRFI 1069


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score =  345 bits (884), Expect = 7e-93
 Identities = 164/244 (67%), Positives = 195/244 (79%)
 Frame = -1

Query: 733  RQKRRAISGERATALKEEVDRLLKAGLIKESFYPTWLANPVLVKKPNGKWRTCVDFTDLN 554
            +QKRR +  ER+ A+ +EVD+LL AG I E  YP WLANPV+VKK N KWR C+DFTDLN
Sbjct: 499  KQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWLANPVVVKKKNDKWRVCIDFTDLN 558

Query: 553  KACPKDSFPLPRIDQLVDATAGHALLSFMDAYSGYNQIPMHEADQEHTSFITDRGLYCYI 374
            KACPKDSFPLP ID++V+AT G+ LLSFMDA+SGYNQIPMH+ DQE TSFI DRG YCY 
Sbjct: 559  KACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHKDDQEKTSFIIDRGTYCYK 618

Query: 373  GMPFGLVNAGATYQRLVNMMFHEQIGKFMEVYVDDMLVKSKKAEDHIKHLGEMFTILRRF 194
             MPFGL N GA YQRLVN MF  Q+GK MEVY+DDMLVKS ++ DHI HL   F  L ++
Sbjct: 619  VMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSTRSADHIDHLKACFETLNKY 678

Query: 193  RMKLNPQKCVFGVESGKFLGFIVNHRGIEANPAKIRALIEMRSPRTIKEVQSLTGRVAAL 14
             MKLNP KC+FGV SG+FLG+IV  RGIEANP +IRA+++++SPR  KEVQ LTGR+A L
Sbjct: 679  NMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRAILDLQSPRNKKEVQRLTGRIAGL 738

Query: 13   NRFV 2
            NRF+
Sbjct: 739  NRFI 742


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  342 bits (876), Expect = 6e-92
 Identities = 166/244 (68%), Positives = 195/244 (79%)
 Frame = -1

Query: 733 RQKRRAISGERATALKEEVDRLLKAGLIKESFYPTWLANPVLVKKPNGKWRTCVDFTDLN 554
           +QKRR +  ERA  + +EVD+LLK G I+E  YP W+AN V+VKK NGK R C+DFTDLN
Sbjct: 23  KQKRRKLGVERAKIVNDEVDKLLKIGSIREVQYPEWVANTVVVKKKNGKDRVCIDFTDLN 82

Query: 553 KACPKDSFPLPRIDQLVDATAGHALLSFMDAYSGYNQIPMHEADQEHTSFITDRGLYCYI 374
           KACPKDSFPLP ID+LV++TAG+ LL+FMDA+SG NQI M+  DQE TSFITDRG+YCY 
Sbjct: 83  KACPKDSFPLPHIDRLVESTAGNELLTFMDAFSGSNQIMMNPEDQEKTSFITDRGIYCYK 142

Query: 373 GMPFGLVNAGATYQRLVNMMFHEQIGKFMEVYVDDMLVKSKKAEDHIKHLGEMFTILRRF 194
            MPFGL NAGATYQRLVN MFH  +GK MEVY+DDMLVKS K EDH+KHL E F IL ++
Sbjct: 143 VMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHVKHLEECFGILNKY 202

Query: 193 RMKLNPQKCVFGVESGKFLGFIVNHRGIEANPAKIRALIEMRSPRTIKEVQSLTGRVAAL 14
           +MKLNP KC FGV SG+FLG+IV  RGIEAN  +I A + M SPR  KEVQ LTGR+AAL
Sbjct: 203 QMKLNPAKCTFGVPSGEFLGYIVTERGIEANSNQINAFLNMPSPRNFKEVQRLTGRIAAL 262

Query: 13  NRFV 2
           NRF+
Sbjct: 263 NRFI 266


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  340 bits (873), Expect = 1e-91
 Identities = 166/246 (67%), Positives = 194/246 (78%)
 Frame = -1

Query: 739  RCRQKRRAISGERATALKEEVDRLLKAGLIKESFYPTWLANPVLVKKPNGKWRTCVDFTD 560
            R    RR +  ERA A+ +EVD+LLK G I+E  YP WLAN V+VKK NGK R C+DFTD
Sbjct: 464  RADVNRRKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTD 523

Query: 559  LNKACPKDSFPLPRIDQLVDATAGHALLSFMDAYSGYNQIPMHEADQEHTSFITDRGLYC 380
            LNKACPKDSFPLP ID+LV++TAG+ LLSFMDA+SGYNQI M+  DQE T FITDRG+YC
Sbjct: 524  LNKACPKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYC 583

Query: 379  YIGMPFGLVNAGATYQRLVNMMFHEQIGKFMEVYVDDMLVKSKKAEDHIKHLGEMFTILR 200
            Y  MPFGL NAGATY RLVN MF E +GK MEVY+DDML+KS K EDH+KHL E F IL 
Sbjct: 584  YKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILN 643

Query: 199  RFRMKLNPQKCVFGVESGKFLGFIVNHRGIEANPAKIRALIEMRSPRTIKEVQSLTGRVA 20
            +++MKLNP KC FGV SG+FLG+IV  RGIEANP +I A + M SP+  KEVQ LTGR+A
Sbjct: 644  QYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIA 703

Query: 19   ALNRFV 2
            ALNRF+
Sbjct: 704  ALNRFI 709


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  335 bits (858), Expect = 8e-90
 Identities = 160/244 (65%), Positives = 192/244 (78%)
 Frame = -1

Query: 733  RQKRRAISGERATALKEEVDRLLKAGLIKESFYPTWLANPVLVKKPNGKWRTCVDFTDLN 554
            +QKRR +  +R   + EEV +LL AG I E  YP WL NPV+VKK NGKWR C+DFTDLN
Sbjct: 784  KQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLN 843

Query: 553  KACPKDSFPLPRIDQLVDATAGHALLSFMDAYSGYNQIPMHEADQEHTSFITDRGLYCYI 374
            KACPKDSFPLP ID+LV+ATAG+ LLSFMDA+SGYNQI MH+ D+E T FITD+G YCY 
Sbjct: 844  KACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYK 903

Query: 373  GMPFGLVNAGATYQRLVNMMFHEQIGKFMEVYVDDMLVKSKKAEDHIKHLGEMFTILRRF 194
             MPFGL NAGATY RLVN MF +Q+   MEVY+DDMLVKS +AE+HI HL + F +L R+
Sbjct: 904  VMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRY 963

Query: 193  RMKLNPQKCVFGVESGKFLGFIVNHRGIEANPAKIRALIEMRSPRTIKEVQSLTGRVAAL 14
             MKLNP KC FGV SG+FLG++V  RGIEANP +I A+I++ SPR  +EVQ L GR+AAL
Sbjct: 964  NMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAAL 1023

Query: 13   NRFV 2
            NRF+
Sbjct: 1024 NRFI 1027