BLASTX nr result
ID: Bupleurum21_contig00034738
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00034738
(608 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24253.3| unnamed protein product [Vitis vinifera] 215 6e-54
ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containi... 215 6e-54
ref|XP_002313262.1| predicted protein [Populus trichocarpa] gi|2... 209 3e-52
ref|XP_002526050.1| pentatricopeptide repeat-containing protein,... 194 1e-47
ref|XP_002537912.1| pentatricopeptide repeat-containing protein,... 194 1e-47
>emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 215 bits (547), Expect = 6e-54
Identities = 110/199 (55%), Positives = 140/199 (70%)
Frame = -1
Query: 602 LWKQMLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALC 423
LWKQ+L L +PNS+TYS++I+GF K+ MLNI+KG+FC +RT G P L+DYNT+MA+LC
Sbjct: 337 LWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLC 396
Query: 422 SESSVEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPD 243
E S+EQAK LFQEM N C +PD+ ++N +ID T AGD QF +E M M + + PD
Sbjct: 397 KEGSLEQAKSLFQEMGNANC--EPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPD 454
Query: 242 AMTFSIMINRLSKLGRLEEDKSMFKKMVESGFTPDNHVYDSXXXXXXXXXXXXEIFDLLR 63
A+TFS +INRLSKLG L+E KS ++MV SGFTPD VYDS EI +LL
Sbjct: 455 ALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLH 514
Query: 62 LMAAKGMVLDETIRNTIVT 6
MAAKG VLD I +TI+T
Sbjct: 515 QMAAKGTVLDRKIVSTILT 533
Score = 84.3 bits (207), Expect = 1e-14
Identities = 50/188 (26%), Positives = 88/188 (46%)
Frame = -1
Query: 608 IGLWKQMLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAA 429
+GL ++M + P+ +Y+ +ING K L + G+ + G +PN T+M
Sbjct: 18 MGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDG 77
Query: 428 LCSESSVEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVA 249
LC + +++A +L + MK K D DV Y +I G++ +E +M + ++
Sbjct: 78 LCKDGRMDEAMELLEAMK--KKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGIS 135
Query: 248 PDAMTFSIMINRLSKLGRLEEDKSMFKKMVESGFTPDNHVYDSXXXXXXXXXXXXEIFDL 69
+ +T+S +++ L +LG+ +E ++ M E G PD Y DL
Sbjct: 136 ANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDL 195
Query: 68 LRLMAAKG 45
L LM KG
Sbjct: 196 LNLMVEKG 203
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/148 (24%), Positives = 82/148 (55%)
Frame = -1
Query: 569 PNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALCSESSVEQAKKL 390
P++ TY+++++G K ++ + I + G ++ YNT+M LC + V++A KL
Sbjct: 206 PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL 265
Query: 389 FQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPDAMTFSIMINRL 210
F M + + +P+V T+N++I G + A + M ++ + +T+++++
Sbjct: 266 FNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGC 325
Query: 209 SKLGRLEEDKSMFKKMVESGFTPDNHVY 126
K G+++E ++K++++ GF P++ Y
Sbjct: 326 LKAGKIKEAMELWKQVLDLGFVPNSFTY 353
>ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like
[Vitis vinifera]
Length = 728
Score = 215 bits (547), Expect = 6e-54
Identities = 110/199 (55%), Positives = 140/199 (70%)
Frame = -1
Query: 602 LWKQMLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALC 423
LWKQ+L L +PNS+TYS++I+GF K+ MLNI+KG+FC +RT G P L+DYNT+MA+LC
Sbjct: 483 LWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLC 542
Query: 422 SESSVEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPD 243
E S+EQAK LFQEM N C +PD+ ++N +ID T AGD QF +E M M + + PD
Sbjct: 543 KEGSLEQAKSLFQEMGNANC--EPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPD 600
Query: 242 AMTFSIMINRLSKLGRLEEDKSMFKKMVESGFTPDNHVYDSXXXXXXXXXXXXEIFDLLR 63
A+TFS +INRLSKLG L+E KS ++MV SGFTPD VYDS EI +LL
Sbjct: 601 ALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLH 660
Query: 62 LMAAKGMVLDETIRNTIVT 6
MAAKG VLD I +TI+T
Sbjct: 661 QMAAKGTVLDRKIVSTILT 679
Score = 84.3 bits (207), Expect = 1e-14
Identities = 50/188 (26%), Positives = 88/188 (46%)
Frame = -1
Query: 608 IGLWKQMLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAA 429
+GL ++M + P+ +Y+ +ING K L + G+ + G +PN T+M
Sbjct: 164 MGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDG 223
Query: 428 LCSESSVEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVA 249
LC + +++A +L + MK K D DV Y +I G++ +E +M + ++
Sbjct: 224 LCKDGRMDEAMELLEAMK--KKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGIS 281
Query: 248 PDAMTFSIMINRLSKLGRLEEDKSMFKKMVESGFTPDNHVYDSXXXXXXXXXXXXEIFDL 69
+ +T+S +++ L +LG+ +E ++ M E G PD Y DL
Sbjct: 282 ANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDL 341
Query: 68 LRLMAAKG 45
L LM KG
Sbjct: 342 LNLMVEKG 349
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/148 (24%), Positives = 82/148 (55%)
Frame = -1
Query: 569 PNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALCSESSVEQAKKL 390
P++ TY+++++G K ++ + I + G ++ YNT+M LC + V++A KL
Sbjct: 352 PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL 411
Query: 389 FQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPDAMTFSIMINRL 210
F M + + +P+V T+N++I G + A + M ++ + +T+++++
Sbjct: 412 FNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGC 471
Query: 209 SKLGRLEEDKSMFKKMVESGFTPDNHVY 126
K G+++E ++K++++ GF P++ Y
Sbjct: 472 LKAGKIKEAMELWKQVLDLGFVPNSFTY 499
Score = 63.5 bits (153), Expect = 3e-08
Identities = 38/159 (23%), Positives = 79/159 (49%)
Frame = -1
Query: 602 LWKQMLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALC 423
++++M H+ ++P+ + S +I F+ + G+ + G N++ N ++ LC
Sbjct: 96 VYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLC 155
Query: 422 SESSVEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPD 243
V +A L +EM PD+ +YN +I+ A ++ A L++M P+
Sbjct: 156 RNGGVFEAMGLIREMGRKSV--SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPN 213
Query: 242 AMTFSIMINRLSKLGRLEEDKSMFKKMVESGFTPDNHVY 126
++T + +++ L K GR++E + + M + GF D +Y
Sbjct: 214 SVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLY 252
>ref|XP_002313262.1| predicted protein [Populus trichocarpa] gi|222849670|gb|EEE87217.1|
predicted protein [Populus trichocarpa]
Length = 559
Score = 209 bits (532), Expect = 3e-52
Identities = 105/200 (52%), Positives = 141/200 (70%)
Frame = -1
Query: 602 LWKQMLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALC 423
LWK++ L L+P+S TYS+MI+GF K++MLN +KG+F R++ G P L+DYNT+MA+LC
Sbjct: 314 LWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLC 373
Query: 422 SESSVEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPD 243
ESS+EQA++LFQEMK + C+PD ++NI+ID T AGDI A+E L DM Q + PD
Sbjct: 374 KESSLEQARRLFQEMKESNCEPD--TISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPD 431
Query: 242 AMTFSIMINRLSKLGRLEEDKSMFKKMVESGFTPDNHVYDSXXXXXXXXXXXXEIFDLLR 63
A T+S INRLSKLG++EE K F M+ SG TPDNHVYDS E+ +LLR
Sbjct: 432 AYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLR 491
Query: 62 LMAAKGMVLDETIRNTIVTY 3
MA G++LD I N+I+T+
Sbjct: 492 QMADMGVILDLEITNSILTF 511
Score = 76.3 bits (186), Expect = 4e-12
Identities = 48/187 (25%), Positives = 85/187 (45%)
Frame = -1
Query: 569 PNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALCSESSVEQAKKL 390
PNS+TY ++++G K + + + ++ G ++ Y+T+++ CS+ +++ K L
Sbjct: 43 PNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKAL 102
Query: 389 FQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPDAMTFSIMINRL 210
F EM P+ V Y+ +I+ G + A L M +R + PD T++ MI L
Sbjct: 103 FDEMLEKGISPN--VVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGL 160
Query: 209 SKLGRLEEDKSMFKKMVESGFTPDNHVYDSXXXXXXXXXXXXEIFDLLRLMAAKGMVLDE 30
K GR + +F M E G P Y+ + F + M KG L+
Sbjct: 161 CKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEV 220
Query: 29 TIRNTIV 9
NT++
Sbjct: 221 VSYNTLI 227
Score = 75.9 bits (185), Expect = 5e-12
Identities = 47/182 (25%), Positives = 79/182 (43%)
Frame = -1
Query: 590 MLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALCSESS 411
M + ++P+ +Y+ +ING K L + + + PN + Y +M LC E
Sbjct: 1 MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60
Query: 410 VEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPDAMTF 231
VE+A +L EMK + DV Y+ +I G + + +M ++ ++P+ + +
Sbjct: 61 VEEAMRLLGEMKRKGL--EVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVY 118
Query: 230 SIMINRLSKLGRLEEDKSMFKKMVESGFTPDNHVYDSXXXXXXXXXXXXEIFDLLRLMAA 51
S +IN K G E ++ M E G PD + Y + DL LM
Sbjct: 119 SCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTE 178
Query: 50 KG 45
KG
Sbjct: 179 KG 180
Score = 69.3 bits (168), Expect = 5e-10
Identities = 40/151 (26%), Positives = 73/151 (48%)
Frame = -1
Query: 602 LWKQMLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALC 423
L+ +ML + PN YS +INGF K + + + + G P++Y Y ++ LC
Sbjct: 102 LFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLC 161
Query: 422 SESSVEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPD 243
+ +A LF M T+ +P TYN++I+ G I A + M ++ +
Sbjct: 162 KDGRARKALDLFDLM--TEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLE 219
Query: 242 AMTFSIMINRLSKLGRLEEDKSMFKKMVESG 150
++++ +I L G+L+E +F ++E G
Sbjct: 220 VVSYNTLIMGLCNNGKLDEAMKLFSSLLEDG 250
Score = 67.4 bits (163), Expect = 2e-09
Identities = 39/148 (26%), Positives = 71/148 (47%)
Frame = -1
Query: 569 PNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALCSESSVEQAKKL 390
P++ TY+++ING K + + IF + G + YNT++ LC+ +++A KL
Sbjct: 183 PSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKL 242
Query: 389 FQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPDAMTFSIMINRL 210
F + +PDV T+N +I G + A E M +R + T I+I
Sbjct: 243 FSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEY 302
Query: 209 SKLGRLEEDKSMFKKMVESGFTPDNHVY 126
K G +++ ++K++ + G P + Y
Sbjct: 303 IKSGIIDKAMELWKRVHKLGLVPSSTTY 330
>ref|XP_002526050.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223534631|gb|EEF36327.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 284
Score = 194 bits (492), Expect = 1e-47
Identities = 101/200 (50%), Positives = 136/200 (68%)
Frame = -1
Query: 602 LWKQMLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALC 423
+WK++ L +P+S TY MI GF ++ MLN++KG+F R+R LG P L DYN +MA+LC
Sbjct: 33 IWKRVNELGFVPDSITYGAMIRGFCRMGMLNVAKGLFTRMRALGLSPALCDYNMLMASLC 92
Query: 422 SESSVEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPD 243
ESS+EQA+KLFQE++N+ C+ D V ++NI+I T AGDIQ A+E L DM Q V P+
Sbjct: 93 KESSLEQARKLFQELRNSNCELD--VFSFNIMIYGTLKAGDIQSAKELLKDMLQMGVNPN 150
Query: 242 AMTFSIMINRLSKLGRLEEDKSMFKKMVESGFTPDNHVYDSXXXXXXXXXXXXEIFDLLR 63
A T+ I+IN SKLG L+E K F +M+ SGF P HVYDS E +LL+
Sbjct: 151 AFTYFILINWFSKLGLLDEAKEAFNRMIGSGFIPSIHVYDSLLKGFSSMGKAEETINLLQ 210
Query: 62 LMAAKGMVLDETIRNTIVTY 3
LMA KG+VLD I+NTI+T+
Sbjct: 211 LMADKGVVLDSEIKNTIMTF 230
>ref|XP_002537912.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223514585|gb|EEF24471.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 254
Score = 194 bits (492), Expect = 1e-47
Identities = 101/200 (50%), Positives = 136/200 (68%)
Frame = -1
Query: 602 LWKQMLHLKLIPNSYTYSLMINGFSKLNMLNISKGIFCRLRTLGPYPNLYDYNTIMAALC 423
+WK++ L +P+S TY MI GF ++ MLN++KG+F R+R LG P L DYN +MA+LC
Sbjct: 3 IWKRVNELGFVPDSITYGAMIRGFCRMGMLNVAKGLFTRMRALGLSPALCDYNMLMASLC 62
Query: 422 SESSVEQAKKLFQEMKNTKCDPDPDVTTYNIIIDATFMAGDIQFAEESLMDMHQRRVAPD 243
ESS+EQA+KLFQE++N+ C+ D V ++NI+I T AGDIQ A+E L DM Q V P+
Sbjct: 63 KESSLEQARKLFQELRNSNCELD--VFSFNIMIYGTLKAGDIQSAKELLKDMLQMGVNPN 120
Query: 242 AMTFSIMINRLSKLGRLEEDKSMFKKMVESGFTPDNHVYDSXXXXXXXXXXXXEIFDLLR 63
A T+ I+IN SKLG L+E K F +M+ SGF P HVYDS E +LL+
Sbjct: 121 AFTYFILINWFSKLGLLDEAKEAFNRMIGSGFIPSIHVYDSLLKGFSSMGKAEETINLLQ 180
Query: 62 LMAAKGMVLDETIRNTIVTY 3
LMA KG+VLD I+NTI+T+
Sbjct: 181 LMADKGVVLDSEIKNTIMTF 200