BLASTX nr result

ID: Bupleurum21_contig00034735 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034735
         (742 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40164.3| unnamed protein product [Vitis vinifera]               77   3e-12
ref|XP_002527480.1| conserved hypothetical protein [Ricinus comm...    62   2e-07
ref|XP_003617550.1| F-box protein [Medicago truncatula] gi|35551...    60   5e-07
ref|XP_002315233.1| predicted protein [Populus trichocarpa] gi|2...    60   6e-07
ref|XP_002321988.1| predicted protein [Populus trichocarpa] gi|2...    59   1e-06

>emb|CBI40164.3| unnamed protein product [Vitis vinifera]
          Length = 423

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
 Frame = +2

Query: 101 PVKFTSFELAGSINGLVCVYDLNHYCRYRYKSVGIWNPATNQYKDIPLPSSGTNNSCG-- 274
           P K   +++ GS NGL+C+ + N    Y   ++ +WNPA  +++   LP    NN     
Sbjct: 104 PSKTDYYQIVGSSNGLICLTESNFKGSYLSLNLFLWNPAIREFQ--TLPKYHINNFTSPL 161

Query: 275 ---YFGLGFDSITNDYKVI-YAYFHQHRPVEAHVYSCNSDCWYKNKVTSTALARGNHSRC 442
                G  F  + NDYKV+   YF +++  EA VYS  +  W K           N SR 
Sbjct: 162 MVVGLGFAFHPVINDYKVVRIVYFMRNKTSEADVYSLRTGSWRKVDANICCYIHSNVSR- 220

Query: 443 PTILHGCPYWYNYNVETADH--YYVTYFDMRHDVFR--FLPGIPFVDPFKQHLKLVSLRD 610
            T ++G  +W        D+    +  FDM  DVF+   LP   + +  ++   L   + 
Sbjct: 221 -TFINGALHWLAGKKNEMDNTDNLILSFDMAKDVFKEIMLPDFGYDELIRK--CLADYKG 277

Query: 611 SLAVLFYD 634
           SL+VLFYD
Sbjct: 278 SLSVLFYD 285


>ref|XP_002527480.1| conserved hypothetical protein [Ricinus communis]
           gi|223533120|gb|EEF34878.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 379

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
 Frame = +2

Query: 119 FELAGSINGLVCVYDLNHYCRYRYKSVGIWNPATNQYKDIPLPSSGTNNSCGYFGLGFDS 298
           FE+ GS NG++C+ D NH   +  K + +WNP+      +PL       S    G GFDS
Sbjct: 99  FEIVGSCNGIICLTD-NH--SHILKRIVLWNPSIGLSVTLPLQRISYKVSNVVLGFGFDS 155

Query: 299 ITNDYKVIYAYFHQHR------PVEAHVYSCNSDCWYKNKVTSTALARGNHSRCPTILHG 460
            TNDYKVI   ++         P E  ++  +   W  N   S      +      +L G
Sbjct: 156 RTNDYKVIRIVYYSTNDDSLMVPPEVEIFELSRGTWRINNSASVPAYDVSKYSSQIVLEG 215

Query: 461 CPYWYNY 481
             +W  Y
Sbjct: 216 AIHWVGY 222


>ref|XP_003617550.1| F-box protein [Medicago truncatula] gi|355518885|gb|AET00509.1|
           F-box protein [Medicago truncatula]
          Length = 407

 Score = 60.1 bits (144), Expect = 5e-07
 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 40/224 (17%)
 Frame = +2

Query: 92  FVRPVKFTSFELAG--SINGLVCVYDLNHYCRYRYKSVGIWNPATNQYKDIP-----LP- 247
           F+ PV  ++ E+ G  S+NG++C     HY  +  KS+ +WNP T + K IP     LP 
Sbjct: 97  FISPVN-SAVEINGFASVNGILCF----HYGLFE-KSISLWNPITEESKLIPSSRTLLPP 150

Query: 248 -------SSGTNNSCGYFGLGFDSITNDYKVI-----------------YAYFHQHRPVE 355
                  +    +     G G+DSI +DYKVI                 +++  QH+ ++
Sbjct: 151 IVHKFKAADSFLHHTMIHGFGYDSIADDYKVICLETFEPLFRNDELSKKHSFLLQHKSLQ 210

Query: 356 A--HVYSCNSDCWYKNKVT--STALARGNHS-RCPTILH--GCPYWYNYNVETADHYYVT 514
               +YS  S+ W K  V     +++ GN       + H    P+W+ Y ++      + 
Sbjct: 211 PFWQIYSLTSNSWKKLHVNMPRASISDGNFQVYMDGVCHWLSMPHWFCYPLKLYVGTCMV 270

Query: 515 YFDMRHDVFRFLPGIPFVDPFKQHLKLVSLRDSLAVL-FYDHVQ 643
            FD+ ++ F   P   +V       +L+ L DS+A++ F DH Q
Sbjct: 271 SFDLNNETFLVTPVPSYV--ILTRTQLLVLNDSIALISFPDHTQ 312


>ref|XP_002315233.1| predicted protein [Populus trichocarpa] gi|222864273|gb|EEF01404.1|
           predicted protein [Populus trichocarpa]
          Length = 381

 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
 Frame = +2

Query: 119 FELAGSINGLVCVYDLNHYCRYRYKSVGIWNPATNQYKDIPLPSSGTNNSCGYFGLGFDS 298
           F++ GS NG++C+  LN    + + S+ +WNP+  +  ++ LP   ++   G FG GF+ 
Sbjct: 92  FQIIGSCNGVICL--LNSPQDHGH-SIILWNPSIGKSLNLVLPRL-SDPFHGIFGFGFNR 147

Query: 299 ITNDYKVIYAYFHQHRPVEAHVYSCNSDCWYKNKVTSTALARGNHSRCPTILHGCPYWYN 478
            +NDYK +      H PV   VYS     W   K    + A G  +  P++L G    YN
Sbjct: 148 QSNDYKFV-RVATPHYPVGCQVYSVKERSW---KAIDVSPALGYINPIPSVLWGRSSSYN 203

Query: 479 Y-----------NVETADHYYVTYFDMRHDVFRFLPGIPFVDPFKQHLKLVSLRDSLAVL 625
           Y           + E     +V  FD+R+D F  +   P++           L + +A+L
Sbjct: 204 YAFLNGVLHWLVDREEFGSRFVLSFDLRNDSFGKMMLSPYL--------ASKLDEWMAIL 255

Query: 626 FYDH 637
            YD+
Sbjct: 256 VYDN 259


>ref|XP_002321988.1| predicted protein [Populus trichocarpa] gi|222868984|gb|EEF06115.1|
           predicted protein [Populus trichocarpa]
          Length = 344

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
 Frame = +2

Query: 122 ELAGSINGLVCVY-------DLNHYCRYRYKSVGIWNPATNQYKDIPLPSSGTNNSC--G 274
           E+ GS NGLVC+        DLN +         +WNPAT QY+++P      N  C   
Sbjct: 96  EIVGSSNGLVCLSIRSKISNDLNAHI--------LWNPATRQYRELP-----PNRICYSQ 142

Query: 275 YFGLGFDSITNDYKVIYAYFHQHRPVEAHVYSCNSDCWYKNKVTSTALARGNHSRCPTIL 454
             G GF    NDYK++   + ++   EA V + ++  W   KV  T  +       P ++
Sbjct: 143 AQGFGFHHGINDYKLLQVAYRKNGQQEAKVLALSTGSW--RKVEDTLPSYDYGIAKPVVV 200

Query: 455 HGCPYWYNYNVETADHYYVTYFDMRHDVF 541
            G   WY+      +  ++  FDM  D F
Sbjct: 201 KG--VWYHMATAARETPFIIRFDMGDDTF 227


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