BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034733
         (417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containi...   127   6e-39
ref|XP_003595326.1| Pentatricopeptide repeat-containing protein ...   108   1e-32
ref|NP_199192.1| pentatricopeptide repeat-containing protein [Ar...    97   4e-27
ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containi...   125   5e-27
ref|XP_002863633.1| pentatricopeptide repeat-containing protein ...    93   6e-26

>ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  127 bits (319), Expect(2) = 6e-39
 Identities = 57/76 (75%), Positives = 66/76 (86%)
 Frame = -2

Query: 278 LFKACGSHPWLDHGRALHTHVLKFLEPTYDHFVQASLLGFYSKCGQISISRYLFDQISQP 99
           LFKACGS PWL HGRALHTHVLKFLEPT D FVQA+LL +Y+KCG++   RYLF+QIS+P
Sbjct: 114 LFKACGSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKP 173

Query: 98  DLATWNSILSAYARNA 51
           DLA+WNSILSAY  N+
Sbjct: 174 DLASWNSILSAYVHNS 189



 Score = 58.5 bits (140), Expect(2) = 6e-39
 Identities = 27/44 (61%), Positives = 35/44 (79%)
 Frame = -1

Query: 405 LYNTLISSILTTSHQQNTHLALSFYTRILTHTTLKPNNYTYPSL 274
           LYNTLISS+     + +TH+A S Y+R+LTHTTLKPN +T+PSL
Sbjct: 73  LYNTLISSLANI--KPHTHIAFSLYSRVLTHTTLKPNGFTFPSL 114


>ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484374|gb|AES65577.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  108 bits (271), Expect(2) = 1e-32
 Identities = 52/93 (55%), Positives = 74/93 (79%), Gaps = 2/93 (2%)
 Frame = -2

Query: 278 LFKACGSHP-WLDHGRALHTHVLKFLEPTYDHFVQASLLGFYSKCGQISISRYLFDQISQ 102
           LFKAC S+  W  +G  LHTHVLKFL+P +D+FVQASLL FY+K G++ +SRY+FD+I++
Sbjct: 256 LFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINE 315

Query: 101 PDLATWNSILSAYARNASV-NFVHGINNVDTNL 6
           PDLATWN IL+AYAR++S  ++ +  ++ D +L
Sbjct: 316 PDLATWNVILNAYARSSSYHSYSNSFDDADFSL 348



 Score = 56.2 bits (134), Expect(2) = 1e-32
 Identities = 24/44 (54%), Positives = 34/44 (77%)
 Frame = -1

Query: 405 LYNTLISSILTTSHQQNTHLALSFYTRILTHTTLKPNNYTYPSL 274
           LYNTLISS++  ++Q   HLA S Y +ILT+  L+PN++T+PSL
Sbjct: 213 LYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSL 256


>ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g43790 gi|10177948|dbj|BAB11307.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332007627|gb|AED95010.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 460

 Score = 97.1 bits (240), Expect(2) = 4e-27
 Identities = 46/81 (56%), Positives = 62/81 (76%), Gaps = 2/81 (2%)
 Frame = -2

Query: 278 LFKACG-SHPWLDHGRALHTHVLKFLEPT-YDHFVQASLLGFYSKCGQISISRYLFDQIS 105
           LFKA G    W  HGRALH HVLKFLEP  +D FVQA+L+GFY+ CG++  +R LF++I 
Sbjct: 118 LFKASGFDAQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIR 177

Query: 104 QPDLATWNSILSAYARNASVN 42
           +PDLATWN++L+AYA +  ++
Sbjct: 178 EPDLATWNTLLAAYANSEEID 198



 Score = 49.3 bits (116), Expect(2) = 4e-27
 Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
 Frame = -1

Query: 405 LYNTLISSILTTSHQQNTHLALSFYTRILTHTT--LKPNNYTYPSL 274
           LYNTLISSI++  +   THLA S Y +IL+  +  ++PN +TYPSL
Sbjct: 73  LYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSL 118


>ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  125 bits (313), Expect = 5e-27
 Identities = 58/92 (63%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
 Frame = -2

Query: 278 LFKACGSHPWLDHGRALHTHVLKFLEPTYDHFVQASLLGFYSKCGQISISRYLFDQISQP 99
           LFKAC SHPWL HG  LH HVLKFL+P YD FVQ SLL FY+K G++ +SRYLFDQIS+P
Sbjct: 110 LFKACASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEP 169

Query: 98  DLATWNSILSAYARNAS-VNFVHGINNVDTNL 6
           DLATWN++L+AYA++AS V++     + D +L
Sbjct: 170 DLATWNTMLAAYAQSASHVSYSTSFEDADMSL 201



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 29/56 (51%), Positives = 37/56 (66%)
 Frame = -1

Query: 405 LYNTLISSILTTSHQQNTHLALSFYTRILTHTTLKPNNYTYPSL*GLWVSPLARPW 238
           LYNTLISS+  T H    HLA S Y  ILTH TL+PN++T+PS   L+ +  + PW
Sbjct: 69  LYNTLISSL--THHSDQIHLAFSLYNHILTHKTLQPNSFTFPS---LFKACASHPW 119


>ref|XP_002863633.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297309468|gb|EFH39892.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 460

 Score = 93.2 bits (230), Expect(2) = 6e-26
 Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 2/77 (2%)
 Frame = -2

Query: 278 LFKACGSHP-WLDHGRALHTHVLKFLEPT-YDHFVQASLLGFYSKCGQISISRYLFDQIS 105
           LFKA G    W  HGRALH HVLKF+EP  +D FVQA+L+GFY+ CG++  +R L ++I 
Sbjct: 118 LFKASGFETKWHRHGRALHAHVLKFIEPVNHDRFVQAALVGFYANCGELREARSLLERIR 177

Query: 104 QPDLATWNSILSAYARN 54
           +PDLATWN++L+AYA +
Sbjct: 178 EPDLATWNTLLAAYANS 194



 Score = 49.3 bits (116), Expect(2) = 6e-26
 Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
 Frame = -1

Query: 405 LYNTLISSILTTSHQQNTHLALSFYTRILTHTT--LKPNNYTYPSL 274
           LYNTLISSI++  +   THLA S Y +IL+  +  ++PN +TYPSL
Sbjct: 73  LYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSL 118