BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00034692
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hy...   120   2e-25
gb|AAD15368.1| putative retroelement pol polyprotein [Arabidopsi...   114   1e-23
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ...   110   9e-23
emb|CAN59949.1| hypothetical protein VITISV_043423 [Vitis vinifera]   108   3e-22
emb|CAN65808.1| hypothetical protein VITISV_033389 [Vitis vinifera]   107   8e-22

>dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hybrida]
          Length = 463

 Score =  120 bits (300), Expect = 2e-25
 Identities = 53/101 (52%), Positives = 75/101 (74%)
 Frame = -3

Query: 305 DQDNPLFLQSSDSPGMKLVNDCFDGTGYSNWKRSMRIALSA*NKIGFIDGTIIQPAPDSP 126
           D ++P +L SSD+PGM L+N  FDG+ Y NWKR + I+LSA NK+GFI G   +P  +  
Sbjct: 32  DINHPYYLASSDAPGMNLINTSFDGSSYGNWKRGVLISLSAKNKLGFITGAYKKPDKEDL 91

Query: 125 NFKAWSRCNDMVISWILSSLSKQIARSVIYSNSAYQMWNEL 3
            F+ W RC+DMV++W+L+SLSK+IA SV+YS +A ++W EL
Sbjct: 92  LFEQWRRCSDMVLAWLLNSLSKEIAESVLYSQTAQELWQEL 132


>gb|AAD15368.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
           gi|17065314|gb|AAL32811.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|21387147|gb|AAM47977.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
          Length = 411

 Score =  114 bits (284), Expect = 1e-23
 Identities = 48/99 (48%), Positives = 71/99 (71%)
 Frame = -3

Query: 299 DNPLFLQSSDSPGMKLVNDCFDGTGYSNWKRSMRIALSA*NKIGFIDGTIIQPAPDSPNF 120
           DNPL L SSD PG+ +V    DG+ Y++W  +MRI+L A NK+GF+DG++++P+ D   F
Sbjct: 64  DNPLILHSSDHPGLSIVAHVLDGSNYNSWSIAMRISLDAKNKLGFVDGSLLRPSVDDSTF 123

Query: 119 KAWSRCNDMVISWILSSLSKQIARSVIYSNSAYQMWNEL 3
           + WSRCN MV SWIL+ ++K+I  S++Y   A +MW +L
Sbjct: 124 RIWSRCNSMVKSWILNVVNKEIYDSILYYEDAVEMWTDL 162


>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. acephala]
          Length = 1131

 Score =  110 bits (276), Expect = 9e-23
 Identities = 47/98 (47%), Positives = 70/98 (71%)
 Frame = -3

Query: 296 NPLFLQSSDSPGMKLVNDCFDGTGYSNWKRSMRIALSA*NKIGFIDGTIIQPAPDSPNFK 117
           +PLF+ ++D PG++L++   DG+ Y +W  +M+IAL A NKIGF+DGT+ +P    P F+
Sbjct: 13  SPLFMHNADHPGLQLISLKLDGSNYDDWNAAMKIALDAKNKIGFVDGTLTRPDTSDPTFR 72

Query: 116 AWSRCNDMVISWILSSLSKQIARSVIYSNSAYQMWNEL 3
            WSRCN MV SW+L+S+S QI RS++  N A  +W +L
Sbjct: 73  LWSRCNSMVKSWLLNSVSPQIYRSILRLNDAADIWRDL 110


>emb|CAN59949.1| hypothetical protein VITISV_043423 [Vitis vinifera]
          Length = 1059

 Score =  108 bits (271), Expect = 3e-22
 Identities = 53/105 (50%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
 Frame = -3

Query: 311 RFDQDNPLFLQSSDSPGMKLVNDCFDGTGYSNWKRSMRIALSA*NKIGFIDGTIIQP-AP 135
           + D  NP FL  SD PGM LV+   +G  YS W R+M I+L+A +K+GFIDGT   P A 
Sbjct: 11  KLDAANPYFLHHSDHPGMVLVSKPLNGDNYSTWCRAMTISLNAKSKLGFIDGTTTMPSAT 70

Query: 134 DSPNFKA-WSRCNDMVISWILSSLSKQIARSVIYSNSAYQMWNEL 3
           D P+  A W +CNDM++SWIL+SLS+ +A SVI+S +A ++W +L
Sbjct: 71  DKPBEHASWKKCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDL 115


>emb|CAN65808.1| hypothetical protein VITISV_033389 [Vitis vinifera]
          Length = 1279

 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/105 (50%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
 Frame = -3

Query: 311 RFDQDNPLFLQSSDSPGMKLVNDCFDGTGYSNWKRSMRIALSA*NKIGFIDGTIIQP-AP 135
           + D  NP FL  SD PGM LV+   +G  YS W R+M I+L+A +K+GFIDGT   P A 
Sbjct: 11  KLDAANPYFLHHSDHPGMVLVSKPLNGDNYSTWCRAMTISLNAKSKLGFIDGTTTMPSAT 70

Query: 134 DSPNFKA-WSRCNDMVISWILSSLSKQIARSVIYSNSAYQMWNEL 3
           D P+  A W +CNDM++SWIL+SLS+ +A SVI+S +A ++W +L
Sbjct: 71  DKPDEHASWKKCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDL 115